Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 119.99782 * 2 1 4 4 N 1.46898 * 109.46978 * 124.13141 * 3 2 1 5 5 C 1.46904 * 111.00316 * 298.49687 * 4 3 2 6 6 C 1.50692 * 109.46813 * 288.38346 * 5 4 3 7 7 H 1.07999 * 120.00531 * 4.86811 * 6 5 4 8 8 C 1.37885 * 119.99941 * 184.87051 * 6 5 4 9 9 N 1.31509 * 119.99829 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00130 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46971 * 59.99897 * 10 8 6 12 12 H 1.48497 * 109.47195 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46912 * 300.00204 * 10 8 6 14 14 C 1.46905 * 111.00105 * 62.44803 * 4 3 2 15 15 C 1.53007 * 109.46718 * 77.23664 * 14 4 3 16 16 H 1.09003 * 109.46573 * 53.51063 * 15 14 4 17 17 O 1.42895 * 109.47583 * 293.50521 * 15 14 4 18 18 C 1.53007 * 109.46962 * 173.50268 * 15 14 4 19 19 O 1.42890 * 109.46997 * 185.00293 * 18 15 14 20 20 C 1.35907 * 117.00082 * 180.02562 * 19 18 15 21 21 C 1.38734 * 120.05032 * 359.73120 * 20 19 18 22 22 C 1.38143 * 119.94043 * 179.74395 * 21 20 19 23 23 C 1.38265 * 120.05577 * 0.50192 * 22 21 20 24 24 C 1.38268 * 120.11375 * 359.77051 * 23 22 21 25 25 C 1.38148 * 120.05176 * 359.97438 * 24 23 22 26 26 H 1.07996 * 120.00182 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.00578 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.00356 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47292 * 4.13424 * 3 2 1 30 30 H 1.08997 * 109.46987 * 244.13061 * 3 2 1 31 31 H 1.09001 * 109.46865 * 48.38256 * 5 4 3 32 32 H 1.08998 * 109.47235 * 168.37939 * 5 4 3 33 33 H 0.97000 * 119.99944 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47131 * 317.24706 * 14 4 3 35 35 H 1.08998 * 109.47717 * 197.24137 * 14 4 3 36 36 H 0.96698 * 113.99680 * 300.00601 * 17 15 14 37 37 H 1.09001 * 109.46474 * 65.00490 * 18 15 14 38 38 H 1.09003 * 109.47197 * 305.00617 * 18 15 14 39 39 H 1.08001 * 120.03270 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.97332 * 180.27188 * 22 21 20 41 41 H 1.08005 * 119.94283 * 179.74767 * 23 22 21 42 42 H 1.07997 * 119.97136 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.02517 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9813 1.3407 1.1464 5 6 2.2437 1.2568 2.4141 6 6 1.5109 2.5512 2.6554 7 1 1.5210 3.3259 1.9031 8 6 0.8272 2.7465 3.8369 9 7 0.8153 1.8033 4.7533 10 14 -0.0807 4.3513 4.1364 11 1 -1.1157 4.5375 3.0880 12 1 -0.7304 4.3108 5.4710 13 1 0.8819 5.4811 4.0878 14 6 3.9856 0.2729 1.0501 15 6 5.0570 0.6709 0.0329 16 1 5.4579 1.6508 0.2922 17 8 4.4785 0.7231 -1.2727 18 6 6.1853 -0.3624 0.0499 19 8 7.2390 0.0687 -0.8136 20 6 8.3252 -0.7420 -0.9139 21 6 8.3780 -1.9253 -0.1916 22 6 9.4808 -2.7503 -0.2994 23 6 10.5359 -2.3924 -1.1182 24 6 10.4882 -1.2108 -1.8347 25 6 9.3853 -0.3850 -1.7344 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3575 2.1323 0.0741 30 1 2.6334 1.3957 -0.9247 31 1 1.5269 0.4372 2.3638 32 1 2.9435 1.0778 3.2304 33 1 0.3341 1.9405 5.5842 34 1 3.5043 -0.6505 0.7281 35 1 4.4487 0.1206 2.0249 36 1 4.1011 -0.1162 -1.5694 37 1 5.8031 -1.3232 -0.2949 38 1 6.5673 -0.4666 1.0654 39 1 7.5560 -2.2032 0.4515 40 1 9.5205 -3.6737 0.2593 41 1 11.3990 -3.0367 -1.1979 42 1 11.3138 -0.9334 -2.4732 43 1 9.3486 0.5380 -2.2940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292176554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -33.870487 kcal Electronic energy + Delta-G solvation = -22790.852116 eV Core-core repulsion = 19416.227421 eV Total energy + Delta-G solvation = -3374.624695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27505 -38.55029 -37.33188 -35.79771 -32.84939 -32.25271 -31.32135 -30.65529 -29.55706 -27.26990 -25.99123 -24.09218 -22.87826 -22.19586 -21.34776 -20.92259 -19.00275 -18.24432 -16.77161 -16.56082 -16.21168 -16.06935 -15.39109 -15.28579 -14.99789 -14.62570 -14.33274 -14.07628 -13.64206 -13.57125 -13.40885 -13.02709 -12.64789 -12.40944 -12.19375 -11.79644 -11.48612 -11.28014 -11.13807 -11.11779 -10.93167 -10.80213 -10.75799 -10.59111 -10.44991 -10.05427 -9.73705 -9.21029 -9.12372 -8.67902 -8.40775 -8.35648 -7.25709 -6.01439 -4.01663 1.13515 1.26923 2.85387 3.01810 3.34470 3.38230 3.41729 3.60371 4.41809 4.48337 4.56795 4.65853 4.76399 4.90713 4.97873 5.09248 5.18218 5.28851 5.31680 5.35987 5.36534 5.47540 5.52806 5.55487 5.80247 5.81502 5.98105 6.12383 6.20884 6.26009 6.30525 6.32515 6.42658 6.59005 6.79122 7.13965 7.22640 7.29520 7.30722 7.40730 7.76840 7.81259 8.08183 8.21075 8.53746 9.04951 9.61792 11.09457 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024255 B = 0.002942 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.132654 B = 9514.483109 C = 9912.899000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.181 4.181 3 C 0.076 3.924 4 N -0.521 5.521 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.024 3.976 15 C 0.118 3.882 16 H 0.116 0.884 17 O -0.544 6.544 18 C 0.028 3.972 19 O -0.302 6.302 20 C 0.134 3.866 21 C -0.212 4.212 22 C -0.081 4.081 23 C -0.166 4.166 24 C -0.082 4.082 25 C -0.155 4.155 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.091 0.909 31 H -0.003 1.003 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.366 0.634 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 -9.732 -11.849 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.200 4.200 3 C -0.052 4.052 4 N -0.243 5.243 5 C 0.065 3.935 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.106 4.106 15 C 0.058 3.942 16 H 0.134 0.866 17 O -0.348 6.348 18 C -0.048 4.048 19 O -0.215 6.215 20 C 0.088 3.912 21 C -0.231 4.231 22 C -0.099 4.099 23 C -0.184 4.184 24 C -0.100 4.100 25 C -0.174 4.174 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.015 0.985 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.212 0.788 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.767 -8.481 -11.695 20.659 hybrid contribution -1.221 -0.957 0.716 1.708 sum 13.546 -9.438 -10.979 19.827 Atomic orbital electron populations 1.23710 0.96125 1.01106 1.01087 1.23583 0.96698 0.99899 0.99853 1.21595 0.94887 0.93762 0.94966 1.62291 1.15253 1.42293 1.04444 1.19819 0.92317 0.96943 0.84389 1.21084 1.30057 1.00984 1.01864 0.92044 1.24961 0.96796 0.96798 0.96017 1.69940 1.43200 1.33208 1.07708 0.86585 0.79909 0.83913 0.77152 1.20313 1.21433 1.20168 1.22642 0.94700 0.94316 0.98923 1.22080 0.89335 0.99513 0.83270 0.86576 1.86652 1.77898 1.37491 1.32766 1.23705 0.87964 0.99173 0.93956 1.86171 1.25766 1.45850 1.63692 1.19145 0.87650 0.89750 0.94636 1.21325 1.01219 0.96219 1.04340 1.20956 0.92902 0.98714 0.97311 1.21042 0.99457 0.98057 0.99822 1.20967 0.97021 0.93844 0.98182 1.20488 0.92987 1.02036 1.01841 0.89815 0.88449 0.88937 0.90232 0.89120 0.98496 0.95436 0.92958 0.94685 0.90480 0.78787 0.91962 0.90987 0.85462 0.85925 0.86099 0.85506 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 14.32 29.02 0.42 -2.71 16 2 C -0.18 -3.11 7.48 -36.02 -0.27 -3.38 16 3 C 0.08 1.42 5.45 -4.97 -0.03 1.39 16 4 N -0.52 -10.71 4.58 -237.51 -1.09 -11.79 16 5 C 0.19 4.81 4.59 -4.98 -0.02 4.78 16 6 C -0.50 -13.95 8.65 -34.44 -0.30 -14.24 16 7 H 0.06 1.71 7.32 -52.49 -0.38 1.32 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 10 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.02 0.38 4.68 -3.82 -0.02 0.36 16 15 C 0.12 1.66 3.47 -26.72 -0.09 1.57 16 16 H 0.12 1.86 8.14 -51.93 -0.42 1.43 16 17 O -0.54 -7.69 10.50 -40.09 -0.42 -8.11 16 18 C 0.03 0.33 4.37 37.16 0.16 0.49 16 19 O -0.30 -4.06 10.10 -24.30 -0.25 -4.31 16 20 C 0.13 1.64 6.69 -39.22 -0.26 1.37 16 21 C -0.21 -2.28 9.04 -39.43 -0.36 -2.63 16 22 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 23 C -0.17 -1.45 10.04 -39.56 -0.40 -1.85 16 24 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 25 C -0.15 -1.69 9.99 -39.43 -0.39 -2.09 16 26 H 0.08 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.10 1.73 7.84 -52.48 -0.41 1.32 16 28 H 0.09 1.44 6.61 -52.49 -0.35 1.09 16 29 H 0.08 1.67 6.77 -51.93 -0.35 1.32 16 30 H 0.09 1.56 5.42 -51.93 -0.28 1.27 16 31 H 0.00 -0.07 6.78 -51.93 -0.35 -0.43 16 32 H 0.03 0.75 7.68 -51.93 -0.40 0.35 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.04 0.52 5.95 -51.93 -0.31 0.21 16 35 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 36 H 0.37 3.97 9.04 45.56 0.41 4.38 16 37 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 38 H 0.07 0.79 7.65 -51.93 -0.40 0.39 16 39 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -31.43 353.02 -8.79 -40.21 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.62 Total: 5.62 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.45 Total: -17.75 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.35 Total: -37.69 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.67 Total: -12.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.43 -8.79 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292176554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.344 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds