Wall clock time and date at job start Tue Mar 31 2020 06:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99805 * 2 1 4 4 N 1.46906 * 109.46533 * 124.12749 * 3 2 1 5 5 C 1.46898 * 111.00029 * 298.68138 * 4 3 2 6 6 C 1.50699 * 109.47391 * 288.11834 * 5 4 3 7 7 H 1.07999 * 119.99838 * 354.70337 * 6 5 4 8 8 C 1.37874 * 119.99698 * 174.70924 * 6 5 4 9 9 N 1.31510 * 120.00276 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99628 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47101 * 119.99911 * 10 8 6 13 13 H 1.48507 * 109.46832 * 239.99696 * 10 8 6 14 14 C 1.46892 * 111.00006 * 62.64082 * 4 3 2 15 15 C 1.53009 * 109.47228 * 66.04416 * 14 4 3 16 16 H 1.08999 * 109.46827 * 304.99788 * 15 14 4 17 17 O 1.42900 * 109.46805 * 64.99761 * 15 14 4 18 18 C 1.53002 * 109.46894 * 184.99602 * 15 14 4 19 19 O 1.42905 * 109.46839 * 174.99919 * 18 15 14 20 20 C 1.35897 * 116.99692 * 180.02562 * 19 18 15 21 21 C 1.38731 * 120.06081 * 359.72447 * 20 19 18 22 22 C 1.38135 * 119.94627 * 179.74275 * 21 20 19 23 23 C 1.38268 * 120.05531 * 0.51542 * 22 21 20 24 24 C 1.38262 * 120.11302 * 359.75907 * 23 22 21 25 25 C 1.38146 * 120.05260 * 359.97438 * 24 23 22 26 26 H 1.08004 * 120.00119 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99866 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00272 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47012 * 4.12641 * 3 2 1 30 30 H 1.08995 * 109.47027 * 244.12468 * 3 2 1 31 31 H 1.09005 * 109.47016 * 48.11738 * 5 4 3 32 32 H 1.08997 * 109.47084 * 168.11184 * 5 4 3 33 33 H 0.97003 * 120.00045 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47925 * 306.04286 * 14 4 3 35 35 H 1.09008 * 109.47000 * 186.03885 * 14 4 3 36 36 H 0.96701 * 114.00130 * 60.00138 * 17 15 14 37 37 H 1.08996 * 109.47456 * 294.99782 * 18 15 14 38 38 H 1.09003 * 109.47227 * 55.00172 * 18 15 14 39 39 H 1.08004 * 120.02375 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.97468 * 180.27830 * 22 21 20 41 41 H 1.08005 * 119.94763 * 179.74876 * 23 22 21 42 42 H 1.08003 * 119.97708 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.02625 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9812 1.3406 1.1466 5 6 2.2439 1.2523 2.4140 6 6 1.5129 2.5468 2.6613 7 1 1.6559 3.3836 1.9937 8 6 0.6618 2.6626 3.7397 9 7 0.4874 1.6434 4.5523 10 14 -0.2448 4.2670 4.0458 11 1 0.1211 5.2506 2.9951 12 1 -1.7092 4.0231 4.0077 13 1 0.1333 4.8028 5.3782 14 6 3.9882 0.2757 1.0480 15 6 4.8967 0.5426 -0.1539 16 1 4.2887 0.6503 -1.0521 17 8 5.6377 1.7444 0.0667 18 6 5.8653 -0.6285 -0.3310 19 8 6.6343 -0.4350 -1.5198 20 6 7.5486 -1.3928 -1.8259 21 6 7.7065 -2.4933 -0.9960 22 6 8.6328 -3.4680 -1.3122 23 6 9.4098 -3.3423 -2.4489 24 6 9.2584 -2.2437 -3.2746 25 6 8.3296 -1.2689 -2.9658 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3575 2.1322 0.0739 30 1 2.6335 1.3956 -0.9246 31 1 1.5257 0.4340 2.3603 32 1 2.9435 1.0686 3.2293 33 1 -0.1117 1.7249 5.3109 34 1 3.4898 -0.6851 0.9203 35 1 4.5869 0.2563 1.9587 36 1 6.2024 1.7199 0.8513 37 1 6.5329 -0.6812 0.5290 38 1 5.3011 -1.5578 -0.4105 39 1 7.1024 -2.5900 -0.1060 40 1 8.7529 -4.3272 -0.6688 41 1 10.1363 -4.1035 -2.6923 42 1 9.8668 -2.1475 -4.1618 43 1 8.2120 -0.4107 -3.6109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292176557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:05 Heat of formation + Delta-G solvation = -34.350451 kcal Electronic energy + Delta-G solvation = -22781.006693 eV Core-core repulsion = 19406.361185 eV Total energy + Delta-G solvation = -3374.645508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.28667 -38.46895 -37.32854 -35.88489 -32.83742 -32.17914 -31.33335 -30.64311 -29.55227 -27.25375 -26.08094 -24.27515 -22.86019 -22.19296 -21.26644 -20.90478 -18.99240 -18.25325 -16.77591 -16.56913 -16.20665 -16.07800 -15.42159 -15.18739 -14.80573 -14.62454 -14.39037 -14.22251 -13.74112 -13.59169 -13.49599 -13.01260 -12.66003 -12.38992 -12.19349 -11.80495 -11.39084 -11.37051 -11.12671 -11.11360 -10.99708 -10.73102 -10.71786 -10.57231 -10.38517 -10.06306 -9.78304 -9.22390 -9.17694 -8.75074 -8.42047 -8.37129 -7.24767 -6.01925 -4.02434 1.12220 1.25531 2.84187 3.00026 3.31119 3.38907 3.44524 3.59041 4.41030 4.53514 4.57684 4.65068 4.75751 4.89423 4.96305 5.05901 5.16891 5.23129 5.33465 5.34028 5.36177 5.47550 5.49327 5.54097 5.68907 5.79127 5.99547 6.10668 6.12607 6.19755 6.23915 6.31252 6.39658 6.57579 6.65537 7.11344 7.19358 7.28403 7.30068 7.40403 7.81525 7.91651 8.07594 8.16254 8.52887 9.06286 9.61689 11.08694 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.002867 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.628955 B = 9764.328113 C = 9932.650992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.185 4.185 3 C 0.087 3.913 4 N -0.517 5.517 5 C 0.190 3.810 6 C -0.500 4.500 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.025 3.975 15 C 0.116 3.884 16 H 0.107 0.893 17 O -0.538 6.538 18 C 0.027 3.973 19 O -0.302 6.302 20 C 0.134 3.866 21 C -0.212 4.212 22 C -0.081 4.081 23 C -0.165 4.165 24 C -0.082 4.082 25 C -0.155 4.155 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.006 0.994 32 H 0.021 0.979 33 H 0.259 0.741 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.370 0.630 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.954 -10.195 -12.491 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.205 4.205 3 C -0.041 4.041 4 N -0.239 5.239 5 C 0.065 3.935 6 C -0.539 4.539 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.105 4.105 15 C 0.056 3.944 16 H 0.124 0.876 17 O -0.342 6.342 18 C -0.049 4.049 19 O -0.215 6.215 20 C 0.088 3.912 21 C -0.231 4.231 22 C -0.099 4.099 23 C -0.184 4.184 24 C -0.100 4.100 25 C -0.174 4.174 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.747 -9.395 -12.953 21.096 hybrid contribution -0.790 -0.623 1.183 1.553 sum 12.957 -10.019 -11.770 20.169 Atomic orbital electron populations 1.23722 0.96046 1.01215 1.00379 1.23562 0.96795 0.99763 1.00407 1.21316 0.94701 0.94406 0.93700 1.62322 1.14722 1.42552 1.04318 1.19795 0.92153 0.97386 0.84123 1.21164 1.24067 0.98230 1.10428 0.91827 1.24967 0.96898 0.96592 0.96134 1.69965 1.37885 1.30320 1.15805 0.86487 0.79315 0.83768 0.78153 1.19604 1.21180 1.21087 1.22643 0.95751 0.94811 0.97268 1.21973 0.90267 0.82736 0.99459 0.87552 1.86643 1.61431 1.36406 1.49671 1.23729 0.94188 1.00877 0.86117 1.86169 1.48341 1.43817 1.43182 1.19146 0.89813 0.88158 0.94091 1.21323 1.03625 0.96253 1.01901 1.20956 0.94499 0.97852 0.96559 1.21044 1.01761 0.99231 0.96328 1.20967 0.96743 0.93258 0.99035 1.20491 0.98166 1.01521 0.97183 0.88359 0.89685 0.88767 0.89523 0.91843 0.97630 0.96073 0.93092 0.94577 0.90832 0.78369 0.91628 0.91308 0.85464 0.85911 0.86085 0.85495 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 14.32 29.01 0.42 -2.64 16 2 C -0.19 -3.27 7.46 -36.02 -0.27 -3.54 16 3 C 0.09 1.64 5.47 -4.97 -0.03 1.62 16 4 N -0.52 -10.65 4.61 -237.51 -1.09 -11.74 16 5 C 0.19 4.78 4.59 -4.98 -0.02 4.76 16 6 C -0.50 -13.85 8.50 -34.44 -0.29 -14.14 16 7 H 0.06 1.78 7.67 -52.49 -0.40 1.38 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 10 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.02 0.40 4.42 -3.82 -0.02 0.38 16 15 C 0.12 1.65 3.21 -26.73 -0.09 1.57 16 16 H 0.11 1.61 6.29 -51.93 -0.33 1.29 16 17 O -0.54 -8.45 13.25 -40.08 -0.53 -8.98 16 18 C 0.03 0.32 4.37 37.16 0.16 0.48 16 19 O -0.30 -4.07 10.10 -24.26 -0.25 -4.31 16 20 C 0.13 1.62 6.69 -39.22 -0.26 1.36 16 21 C -0.21 -2.26 9.04 -39.44 -0.36 -2.62 16 22 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 23 C -0.17 -1.43 10.04 -39.56 -0.40 -1.83 16 24 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 25 C -0.15 -1.68 9.99 -39.43 -0.39 -2.07 16 26 H 0.10 1.76 7.84 -52.48 -0.41 1.35 16 27 H 0.08 1.32 8.06 -52.48 -0.42 0.89 16 28 H 0.09 1.53 6.75 -52.49 -0.35 1.18 16 29 H 0.09 1.81 7.01 -51.93 -0.36 1.45 16 30 H 0.06 1.08 6.26 -51.93 -0.32 0.76 16 31 H 0.01 0.16 6.77 -51.93 -0.35 -0.19 16 32 H 0.02 0.57 7.81 -51.93 -0.41 0.16 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.04 0.57 6.27 -51.93 -0.33 0.24 16 35 H 0.07 1.17 7.86 -51.92 -0.41 0.76 16 36 H 0.37 4.61 9.05 45.56 0.41 5.02 16 37 H 0.07 0.69 7.65 -51.93 -0.40 0.29 16 38 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -31.63 355.53 -8.87 -40.51 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.64 Total: 5.76 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.44 Total: -17.49 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.36 Total: -37.44 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.78 Total: -13.29 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.63 -8.87 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292176557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.155 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds