Wall clock time and date at job start Tue Mar 31 2020 06:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99805 * 2 1 4 4 N 1.46906 * 109.46533 * 124.12749 * 3 2 1 5 5 C 1.46898 * 111.00029 * 298.68138 * 4 3 2 6 6 C 1.50699 * 109.47391 * 288.11834 * 5 4 3 7 7 H 1.07999 * 119.99838 * 354.70337 * 6 5 4 8 8 C 1.37874 * 119.99698 * 174.70924 * 6 5 4 9 9 N 1.31510 * 120.00276 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99628 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47101 * 119.99911 * 10 8 6 13 13 H 1.48507 * 109.46832 * 239.99696 * 10 8 6 14 14 C 1.46892 * 111.00006 * 62.64082 * 4 3 2 15 15 C 1.53009 * 109.47228 * 66.04416 * 14 4 3 16 16 H 1.08999 * 109.46827 * 304.99788 * 15 14 4 17 17 O 1.42900 * 109.46805 * 64.99761 * 15 14 4 18 18 C 1.53002 * 109.46894 * 184.99602 * 15 14 4 19 19 O 1.42905 * 109.46839 * 174.99919 * 18 15 14 20 20 C 1.35897 * 116.99692 * 180.02562 * 19 18 15 21 21 C 1.38731 * 120.06081 * 359.72447 * 20 19 18 22 22 C 1.38135 * 119.94627 * 179.74275 * 21 20 19 23 23 C 1.38268 * 120.05531 * 0.51542 * 22 21 20 24 24 C 1.38262 * 120.11302 * 359.75907 * 23 22 21 25 25 C 1.38146 * 120.05260 * 359.97438 * 24 23 22 26 26 H 1.08004 * 120.00119 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99866 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00272 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47012 * 4.12641 * 3 2 1 30 30 H 1.08995 * 109.47027 * 244.12468 * 3 2 1 31 31 H 1.09005 * 109.47016 * 48.11738 * 5 4 3 32 32 H 1.08997 * 109.47084 * 168.11184 * 5 4 3 33 33 H 0.97003 * 120.00045 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.47925 * 306.04286 * 14 4 3 35 35 H 1.09008 * 109.47000 * 186.03885 * 14 4 3 36 36 H 0.96701 * 114.00130 * 60.00138 * 17 15 14 37 37 H 1.08996 * 109.47456 * 294.99782 * 18 15 14 38 38 H 1.09003 * 109.47227 * 55.00172 * 18 15 14 39 39 H 1.08004 * 120.02375 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.97468 * 180.27830 * 22 21 20 41 41 H 1.08005 * 119.94763 * 179.74876 * 23 22 21 42 42 H 1.08003 * 119.97708 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.02625 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9812 1.3406 1.1466 5 6 2.2439 1.2523 2.4140 6 6 1.5129 2.5468 2.6613 7 1 1.6559 3.3836 1.9937 8 6 0.6618 2.6626 3.7397 9 7 0.4874 1.6434 4.5523 10 14 -0.2448 4.2670 4.0458 11 1 0.1211 5.2506 2.9951 12 1 -1.7092 4.0231 4.0077 13 1 0.1333 4.8028 5.3782 14 6 3.9882 0.2757 1.0480 15 6 4.8967 0.5426 -0.1539 16 1 4.2887 0.6503 -1.0521 17 8 5.6377 1.7444 0.0667 18 6 5.8653 -0.6285 -0.3310 19 8 6.6343 -0.4350 -1.5198 20 6 7.5486 -1.3928 -1.8259 21 6 7.7065 -2.4933 -0.9960 22 6 8.6328 -3.4680 -1.3122 23 6 9.4098 -3.3423 -2.4489 24 6 9.2584 -2.2437 -3.2746 25 6 8.3296 -1.2689 -2.9658 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3575 2.1322 0.0739 30 1 2.6335 1.3956 -0.9246 31 1 1.5257 0.4340 2.3603 32 1 2.9435 1.0686 3.2293 33 1 -0.1117 1.7249 5.3109 34 1 3.4898 -0.6851 0.9203 35 1 4.5869 0.2563 1.9587 36 1 6.2024 1.7199 0.8513 37 1 6.5329 -0.6812 0.5290 38 1 5.3011 -1.5578 -0.4105 39 1 7.1024 -2.5900 -0.1060 40 1 8.7529 -4.3272 -0.6688 41 1 10.1363 -4.1035 -2.6923 42 1 9.8668 -2.1475 -4.1618 43 1 8.2120 -0.4107 -3.6109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292176557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:04 Heat of formation + Delta-G solvation = -55.736608 kcal Electronic energy + Delta-G solvation = -22781.934067 eV Core-core repulsion = 19406.361185 eV Total energy + Delta-G solvation = -3375.572881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.14040 -39.73108 -38.36660 -37.15017 -34.83834 -33.69314 -32.19357 -31.64115 -30.55662 -29.02643 -27.42606 -25.87020 -23.82334 -23.18789 -22.47587 -22.33693 -20.40477 -19.13722 -18.37375 -17.78672 -17.66093 -16.87101 -16.80732 -16.27523 -16.25418 -16.04981 -15.64155 -15.40591 -15.08509 -14.84228 -14.32668 -14.21067 -13.97516 -13.81499 -13.46108 -13.18648 -12.81294 -12.74010 -12.54564 -12.46357 -12.30183 -12.15348 -12.07307 -11.97652 -11.94193 -11.65360 -11.35271 -10.87160 -10.58537 -10.18894 -9.94261 -9.15917 -8.90909 -8.16891 -6.25056 0.40409 0.50715 1.39487 1.41223 1.43240 1.54136 2.07494 2.42177 2.86245 3.15786 3.30054 3.54225 3.81616 3.87585 3.95258 4.02866 4.07299 4.11458 4.22311 4.27656 4.33244 4.36890 4.51436 4.55272 4.59083 4.73095 4.77029 4.94463 5.03784 5.09053 5.10215 5.23086 5.35892 5.38589 5.49675 5.61463 5.68069 5.70654 5.88051 5.89743 6.11950 6.36683 6.45035 6.64830 6.88869 6.91911 7.43923 8.93143 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.002867 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.628955 B = 9764.328113 C = 9932.650992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.191 4.191 3 C 0.089 3.911 4 N -0.529 5.529 5 C 0.208 3.792 6 C -0.514 4.514 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.027 3.973 15 C 0.127 3.873 16 H 0.097 0.903 17 O -0.559 6.559 18 C 0.035 3.965 19 O -0.324 6.324 20 C 0.106 3.894 21 C -0.223 4.223 22 C -0.087 4.087 23 C -0.165 4.165 24 C -0.083 4.083 25 C -0.173 4.173 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.083 0.917 31 H -0.015 1.015 32 H -0.002 1.002 33 H 0.262 0.738 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.382 0.618 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 -11.243 -13.242 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.211 4.211 3 C -0.039 4.039 4 N -0.251 5.251 5 C 0.082 3.918 6 C -0.552 4.552 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.102 4.102 15 C 0.067 3.933 16 H 0.115 0.885 17 O -0.365 6.365 18 C -0.041 4.041 19 O -0.238 6.238 20 C 0.061 3.939 21 C -0.241 4.241 22 C -0.105 4.105 23 C -0.183 4.183 24 C -0.101 4.101 25 C -0.192 4.192 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.002 0.998 32 H 0.016 0.984 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.805 -10.449 -13.720 22.729 hybrid contribution -1.024 -0.350 1.358 1.737 sum 13.781 -10.798 -12.362 21.432 Atomic orbital electron populations 1.23879 0.96188 1.01790 0.99875 1.23589 0.96974 0.99709 1.00802 1.21250 0.94451 0.94394 0.93788 1.62170 1.15076 1.44938 1.02913 1.19398 0.91187 0.95525 0.85698 1.21428 1.24489 0.98958 1.10337 0.92733 1.25762 0.97708 0.99842 0.95881 1.70068 1.38646 1.32237 1.16333 0.85482 0.78163 0.79795 0.78084 1.19173 1.20485 1.20506 1.22681 0.94973 0.93965 0.98549 1.21773 0.90371 0.83361 0.97799 0.88490 1.86598 1.61858 1.37405 1.50623 1.23563 0.94082 0.99906 0.86517 1.86103 1.49094 1.44891 1.43680 1.19410 0.90460 0.88740 0.95255 1.21507 1.04296 0.96248 1.02072 1.21312 0.93909 0.98126 0.97114 1.21442 1.01666 0.99481 0.95699 1.21313 0.96193 0.92686 0.99879 1.20722 0.98881 1.02354 0.97203 0.89497 0.87494 0.86926 0.92121 0.89868 0.99774 0.98360 0.92873 0.93441 0.90608 0.76918 0.90204 0.89941 0.84728 0.83670 0.83423 0.82971 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.16 14.32 67.78 0.97 -5.19 16 2 C -0.19 -6.64 7.46 25.65 0.19 -6.45 16 3 C 0.09 3.39 5.47 85.56 0.47 3.85 16 4 N -0.53 -21.98 4.61 -905.36 -4.17 -26.15 16 5 C 0.21 10.69 4.59 85.56 0.39 11.09 16 6 C -0.51 -28.95 8.50 25.60 0.22 -28.73 16 7 H 0.05 3.11 7.67 -2.91 -0.02 3.09 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 10 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 14 C 0.03 0.87 4.42 86.31 0.38 1.25 16 15 C 0.13 3.53 3.21 30.60 0.10 3.63 16 16 H 0.10 2.88 6.29 -2.39 -0.02 2.87 16 17 O -0.56 -17.37 13.25 -144.35 -1.91 -19.28 16 18 C 0.04 0.79 4.37 71.98 0.31 1.11 16 19 O -0.32 -8.56 10.10 -87.76 -0.89 -9.45 16 20 C 0.11 2.50 6.69 22.51 0.15 2.65 16 21 C -0.22 -4.41 9.04 22.36 0.20 -4.21 16 22 C -0.09 -1.39 10.04 22.25 0.22 -1.17 16 23 C -0.16 -2.39 10.04 22.28 0.22 -2.17 16 24 C -0.08 -1.31 10.04 22.25 0.22 -1.09 16 25 C -0.17 -3.61 9.99 22.37 0.22 -3.39 16 26 H 0.09 3.15 7.84 -2.91 -0.02 3.13 16 27 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.11 3.48 6.75 -2.91 -0.02 3.46 16 29 H 0.06 2.60 7.01 -2.39 -0.02 2.58 16 30 H 0.08 2.82 6.26 -2.39 -0.01 2.80 16 31 H -0.02 -0.85 6.77 -2.38 -0.02 -0.87 16 32 H 0.00 -0.09 7.81 -2.39 -0.02 -0.11 16 33 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.05 1.43 6.27 -2.39 -0.01 1.41 16 35 H 0.08 2.38 7.86 -2.38 -0.02 2.37 16 36 H 0.38 9.38 9.05 -74.06 -0.67 8.71 16 37 H 0.08 1.55 7.65 -2.39 -0.02 1.54 16 38 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 39 H 0.13 2.33 6.30 -2.91 -0.02 2.31 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 43 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -68.19 355.53 0.41 -67.78 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.33 Total: 23.55 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 4.74 Total: -28.01 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.88 Total: -81.21 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -2.80 Total: -28.73 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.19 0.41 -67.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292176557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.043 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds