Wall clock time and date at job start Tue Mar 31 2020 06:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46673 * 2 1 4 4 H 1.09004 * 109.47416 * 304.99833 * 3 2 1 5 5 C 1.52999 * 109.46974 * 184.99910 * 3 2 1 6 6 O 1.42902 * 109.47239 * 64.99962 * 3 2 1 7 7 C 1.35977 * 116.99745 * 204.04406 * 6 3 2 8 8 C 1.38717 * 119.98231 * 184.65704 * 7 6 3 9 9 C 1.38093 * 120.01567 * 180.23258 * 8 7 6 10 10 C 1.38847 * 119.98082 * 359.51689 * 9 8 7 11 11 N 1.40105 * 120.01316 * 180.27351 * 10 9 8 12 12 C 1.34784 * 119.99967 * 144.81370 * 11 10 9 13 13 O 1.21289 * 119.99953 * 4.19527 * 12 11 10 14 14 C 1.50694 * 120.00033 * 184.19845 * 12 11 10 15 15 C 1.53001 * 109.47383 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47383 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99916 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99923 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47298 * 90.00208 * 20 18 16 22 22 H 1.48503 * 109.47162 * 209.99841 * 20 18 16 23 23 H 1.48499 * 109.47131 * 330.00015 * 20 18 16 24 24 C 1.38851 * 119.97154 * 0.25743 * 10 9 8 25 25 C 1.38090 * 119.98174 * 359.97438 * 24 10 9 26 26 H 1.08997 * 109.47636 * 299.99572 * 1 2 3 27 27 H 1.08996 * 109.47351 * 60.00608 * 1 2 3 28 28 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47112 * 240.00399 * 2 1 3 30 30 H 1.08996 * 109.47351 * 119.99392 * 2 1 3 31 31 H 1.09001 * 109.47148 * 179.97438 * 5 3 2 32 32 H 1.08996 * 109.47083 * 299.99839 * 5 3 2 33 33 H 1.08997 * 109.46992 * 60.00371 * 5 3 2 34 34 H 1.07998 * 119.99479 * 0.02562 * 8 7 6 35 35 H 1.07996 * 120.00916 * 179.79803 * 9 8 7 36 36 H 0.96992 * 120.00344 * 324.81452 * 11 10 9 37 37 H 1.09000 * 109.47277 * 300.00058 * 14 12 11 38 38 H 1.09005 * 109.47247 * 59.99386 * 14 12 11 39 39 H 1.08999 * 109.46720 * 299.99915 * 15 14 12 40 40 H 1.08996 * 109.47099 * 59.99727 * 15 14 12 41 41 H 0.97007 * 119.99805 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.00528 * 180.02562 * 24 10 9 43 43 H 1.08000 * 119.98489 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1257 6 8 1.6618 2.0815 1.2211 7 6 1.5713 3.4381 1.2056 8 6 1.3040 4.1285 2.3787 9 6 1.2072 5.5059 2.3629 10 6 1.3873 6.2005 1.1742 11 7 1.2949 7.5984 1.1585 12 6 2.0889 8.3171 0.3401 13 8 2.8290 7.7520 -0.4370 14 6 2.0571 9.8229 0.3908 15 6 3.0456 10.3886 -0.6310 16 6 3.0134 11.8943 -0.5808 17 1 2.3535 12.3976 0.1104 18 6 3.8263 12.6295 -1.4173 19 7 4.6294 12.0166 -2.2593 20 14 3.7858 14.4960 -1.3556 21 1 4.7836 14.9805 -0.3682 22 1 4.1115 15.0429 -2.6973 23 1 2.4302 14.9487 -0.9522 24 6 1.6595 5.5092 0.0012 25 6 1.7512 4.1314 0.0177 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9279 2.4722 -0.1262 32 1 3.9993 0.9055 0.7161 33 1 3.8531 0.9572 -1.0571 34 1 1.1683 3.5884 3.3040 35 1 0.9959 6.0430 3.2757 36 1 0.6596 8.0490 1.7365 37 1 1.0518 10.1732 0.1567 38 1 2.3355 10.1589 1.3897 39 1 4.0508 10.0383 -0.3964 40 1 2.7676 10.0527 -1.6299 41 1 5.2011 12.5339 -2.8481 42 1 1.8001 6.0489 -0.9236 43 1 1.9625 3.5936 -0.8948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292200262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:43 Heat of formation + Delta-G solvation = -68.592177 kcal Electronic energy + Delta-G solvation = -22332.982678 eV Core-core repulsion = 18956.852338 eV Total energy + Delta-G solvation = -3376.130341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57741 -39.57269 -37.53638 -34.75725 -33.69312 -33.51040 -31.20313 -31.00970 -30.14141 -28.57295 -25.71814 -24.25581 -23.38019 -22.79711 -21.36285 -20.68238 -19.66011 -18.46958 -17.32377 -16.94783 -16.07137 -15.59917 -15.49814 -14.97780 -14.78268 -14.50027 -14.31985 -13.98267 -13.69915 -13.43283 -13.28596 -13.19895 -12.80818 -12.56883 -12.27659 -12.19272 -12.09346 -11.91134 -11.40795 -11.36070 -11.20164 -10.97510 -10.92738 -10.62558 -10.58399 -10.01012 -9.75162 -9.65872 -9.24664 -9.10437 -8.92054 -8.35236 -7.60224 -5.98929 -4.03560 1.32270 1.44948 3.06512 3.09153 3.31848 3.37230 3.39618 3.44246 3.85162 4.36958 4.45282 4.58686 4.69148 4.84185 4.90844 5.00420 5.15888 5.26416 5.27755 5.33595 5.36220 5.39743 5.47472 5.56148 5.61199 5.69273 5.74621 5.88023 5.96910 5.99218 6.06173 6.14531 6.15286 6.43673 6.45333 6.53608 6.82812 6.98582 7.42248 7.70257 7.73158 7.80975 8.03006 8.34186 8.62161 9.04537 9.60232 11.11991 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.002512 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.781598 B =11142.830820 C =11641.093256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.075 0.925 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.109 3.891 8 C -0.137 4.137 9 C -0.112 4.112 10 C 0.118 3.882 11 N -0.685 5.685 12 C 0.509 3.491 13 O -0.517 6.517 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.081 4.081 25 C -0.191 4.191 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.408 0.592 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.261 0.739 42 H 0.143 0.857 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -22.171 7.852 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.092 0.908 5 C -0.238 4.238 6 O -0.225 6.225 7 C 0.063 3.937 8 C -0.156 4.156 9 C -0.132 4.132 10 C 0.024 3.976 11 N -0.332 5.332 12 C 0.299 3.701 13 O -0.390 6.390 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.102 4.102 25 C -0.210 4.210 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.161 0.839 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.495 -22.601 7.274 25.217 hybrid contribution -0.138 1.342 0.087 1.351 sum -8.633 -21.260 7.361 24.097 Atomic orbital electron populations 1.21760 0.95155 1.01739 1.02471 1.21619 0.96809 0.94006 1.03076 1.22494 0.95047 0.93755 0.86470 0.90754 1.22358 0.95230 1.03450 1.02779 1.86091 1.84020 1.16663 1.35745 1.18903 0.98244 0.82409 0.94119 1.20121 1.05945 0.92986 0.96521 1.20715 1.02694 0.93414 0.96419 1.17778 1.02798 0.83522 0.93533 1.43876 1.40885 1.04065 1.44333 1.21812 0.78076 0.91483 0.78770 1.90659 1.38925 1.72646 1.36818 1.21902 1.03831 0.87178 1.03959 1.18912 0.93445 0.94677 0.93055 1.21202 1.23143 0.91407 1.20884 0.92539 1.25028 0.95401 0.98607 0.95365 1.69997 1.24710 1.35428 1.22659 0.86577 0.78320 0.85644 0.77321 1.20651 1.21210 1.19870 1.21188 0.97536 0.93026 0.98421 1.21166 1.07615 0.94805 0.97414 0.91926 0.92774 0.92554 0.90160 0.90869 0.91570 0.91536 0.91086 0.85229 0.85193 0.75705 0.89878 0.89856 0.95747 0.95746 0.92912 0.83918 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.81 37.16 0.36 -0.74 16 2 C -0.12 -0.84 5.64 -26.73 -0.15 -0.99 16 3 C 0.08 0.71 2.25 -26.73 -0.06 0.65 16 4 H 0.07 0.67 5.88 -51.93 -0.31 0.36 16 5 C -0.18 -1.57 9.31 37.16 0.35 -1.22 16 6 O -0.31 -3.57 9.34 -19.67 -0.18 -3.75 16 7 C 0.11 1.37 6.55 -39.23 -0.26 1.11 16 8 C -0.14 -1.62 9.98 -39.46 -0.39 -2.01 16 9 C -0.11 -1.34 9.96 -39.41 -0.39 -1.74 16 10 C 0.12 1.72 6.30 -83.62 -0.53 1.19 16 11 N -0.68 -9.87 5.34 -9.83 -0.05 -9.93 16 12 C 0.51 9.60 7.67 -10.98 -0.08 9.52 16 13 O -0.52 -11.79 13.44 5.55 0.07 -11.72 16 14 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 15 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 16 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.08 -1.27 8.69 -39.41 -0.34 -1.61 16 25 C -0.19 -2.55 8.44 -39.46 -0.33 -2.88 16 26 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.68 7.52 -51.93 -0.39 0.29 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.41 4.36 8.82 -40.82 -0.36 4.00 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.14 2.51 6.24 -52.49 -0.33 2.18 16 43 H 0.13 1.50 5.75 -52.49 -0.30 1.20 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -33.61 356.88 -8.29 -41.90 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.70 Total: 2.23 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.52 Total: -14.09 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.68 Total: -36.45 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.11 Total: -15.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.61 -8.29 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292200262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.695 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds