Wall clock time and date at job start Tue Mar 31 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46673 * 2 1 4 4 H 1.09004 * 109.47416 * 304.99833 * 3 2 1 5 5 C 1.52999 * 109.46974 * 184.99910 * 3 2 1 6 6 O 1.42902 * 109.47239 * 64.99962 * 3 2 1 7 7 C 1.35977 * 116.99745 * 204.04406 * 6 3 2 8 8 C 1.38717 * 119.98231 * 184.65704 * 7 6 3 9 9 C 1.38093 * 120.01567 * 180.23258 * 8 7 6 10 10 C 1.38847 * 119.98082 * 359.51689 * 9 8 7 11 11 N 1.40105 * 120.01316 * 180.27351 * 10 9 8 12 12 C 1.34784 * 119.99967 * 144.81370 * 11 10 9 13 13 O 1.21289 * 119.99953 * 4.19527 * 12 11 10 14 14 C 1.50694 * 120.00033 * 184.19845 * 12 11 10 15 15 C 1.53001 * 109.47383 * 179.97438 * 14 12 11 16 16 C 1.50694 * 109.47383 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99916 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99923 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47298 * 90.00208 * 20 18 16 22 22 H 1.48503 * 109.47162 * 209.99841 * 20 18 16 23 23 H 1.48499 * 109.47131 * 330.00015 * 20 18 16 24 24 C 1.38851 * 119.97154 * 0.25743 * 10 9 8 25 25 C 1.38090 * 119.98174 * 359.97438 * 24 10 9 26 26 H 1.08997 * 109.47636 * 299.99572 * 1 2 3 27 27 H 1.08996 * 109.47351 * 60.00608 * 1 2 3 28 28 H 1.09001 * 109.46821 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47112 * 240.00399 * 2 1 3 30 30 H 1.08996 * 109.47351 * 119.99392 * 2 1 3 31 31 H 1.09001 * 109.47148 * 179.97438 * 5 3 2 32 32 H 1.08996 * 109.47083 * 299.99839 * 5 3 2 33 33 H 1.08997 * 109.46992 * 60.00371 * 5 3 2 34 34 H 1.07998 * 119.99479 * 0.02562 * 8 7 6 35 35 H 1.07996 * 120.00916 * 179.79803 * 9 8 7 36 36 H 0.96992 * 120.00344 * 324.81452 * 11 10 9 37 37 H 1.09000 * 109.47277 * 300.00058 * 14 12 11 38 38 H 1.09005 * 109.47247 * 59.99386 * 14 12 11 39 39 H 1.08999 * 109.46720 * 299.99915 * 15 14 12 40 40 H 1.08996 * 109.47099 * 59.99727 * 15 14 12 41 41 H 0.97007 * 119.99805 * 179.97438 * 19 18 16 42 42 H 1.07997 * 120.00528 * 180.02562 * 24 10 9 43 43 H 1.08000 * 119.98489 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5647 1.4445 -0.1257 6 8 1.6618 2.0815 1.2211 7 6 1.5713 3.4381 1.2056 8 6 1.3040 4.1285 2.3787 9 6 1.2072 5.5059 2.3629 10 6 1.3873 6.2005 1.1742 11 7 1.2949 7.5984 1.1585 12 6 2.0889 8.3171 0.3401 13 8 2.8290 7.7520 -0.4370 14 6 2.0571 9.8229 0.3908 15 6 3.0456 10.3886 -0.6310 16 6 3.0134 11.8943 -0.5808 17 1 2.3535 12.3976 0.1104 18 6 3.8263 12.6295 -1.4173 19 7 4.6294 12.0166 -2.2593 20 14 3.7858 14.4960 -1.3556 21 1 4.7836 14.9805 -0.3682 22 1 4.1115 15.0429 -2.6973 23 1 2.4302 14.9487 -0.9522 24 6 1.6595 5.5092 0.0012 25 6 1.7512 4.1314 0.0177 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9279 2.4722 -0.1262 32 1 3.9993 0.9055 0.7161 33 1 3.8531 0.9572 -1.0571 34 1 1.1683 3.5884 3.3040 35 1 0.9959 6.0430 3.2757 36 1 0.6596 8.0490 1.7365 37 1 1.0518 10.1732 0.1567 38 1 2.3355 10.1589 1.3897 39 1 4.0508 10.0383 -0.3964 40 1 2.7676 10.0527 -1.6299 41 1 5.2011 12.5339 -2.8481 42 1 1.8001 6.0489 -0.9236 43 1 1.9625 3.5936 -0.8948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292200262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:42 Heat of formation + Delta-G solvation = -89.322030 kcal Electronic energy + Delta-G solvation = -22333.881592 eV Core-core repulsion = 18956.852338 eV Total energy + Delta-G solvation = -3377.029254 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68427 -40.76303 -38.65268 -35.81492 -35.55059 -34.69498 -33.02914 -32.08995 -30.84991 -29.81449 -27.58435 -25.04789 -24.50853 -24.05379 -22.80964 -21.56342 -21.11035 -19.40727 -18.84953 -18.38707 -17.62938 -16.89690 -16.48917 -16.47334 -16.15742 -15.76364 -15.28660 -15.02511 -14.80466 -14.56222 -14.31605 -14.26232 -14.09149 -13.98081 -13.51302 -13.44357 -13.24829 -12.86676 -12.79686 -12.72683 -12.47954 -12.22508 -11.99182 -11.92726 -11.72008 -11.64969 -11.41859 -11.30488 -10.92043 -10.66814 -10.56541 -9.99370 -8.69066 -8.18603 -6.32524 0.29664 0.36249 1.42358 1.44941 1.55831 1.64566 2.10454 2.29040 2.44062 2.79474 3.14730 3.69255 3.76854 3.88327 3.95606 4.02958 4.09695 4.24499 4.37889 4.43245 4.45700 4.53494 4.56629 4.63066 4.66176 4.71580 4.89559 4.96990 5.05273 5.07408 5.08077 5.17218 5.23330 5.33967 5.38315 5.42338 5.46485 5.50698 5.61998 5.83567 5.87939 6.16628 6.47799 6.51883 6.86051 7.25027 7.37842 8.94055 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.002512 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.781598 B =11142.830820 C =11641.093256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C 0.071 3.929 4 H 0.072 0.928 5 C -0.178 4.178 6 O -0.314 6.314 7 C 0.110 3.890 8 C -0.137 4.137 9 C -0.096 4.096 10 C 0.092 3.908 11 N -0.660 5.660 12 C 0.510 3.490 13 O -0.568 6.568 14 C -0.116 4.116 15 C 0.041 3.959 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.254 1.254 24 C -0.105 4.105 25 C -0.197 4.197 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.428 0.572 37 H 0.110 0.890 38 H 0.110 0.890 39 H -0.018 1.018 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.111 0.889 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 -22.403 10.206 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C 0.015 3.985 4 H 0.090 0.910 5 C -0.236 4.236 6 O -0.228 6.228 7 C 0.064 3.936 8 C -0.156 4.156 9 C -0.115 4.115 10 C -0.001 4.001 11 N -0.308 5.308 12 C 0.300 3.700 13 O -0.446 6.446 14 C -0.156 4.156 15 C 0.004 3.996 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.178 1.178 24 C -0.126 4.126 25 C -0.216 4.216 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.268 0.732 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.129 0.871 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.138 -22.851 9.684 26.809 hybrid contribution 0.348 1.243 -0.643 1.442 sum -9.790 -21.608 9.041 25.387 Atomic orbital electron populations 1.21759 0.95202 1.02454 1.01696 1.21645 0.96715 0.92521 1.04181 1.22746 0.95357 0.94806 0.85589 0.90966 1.22347 0.94928 1.02319 1.03987 1.86100 1.83822 1.15898 1.37029 1.19085 0.97341 0.83068 0.94077 1.20514 1.04740 0.93112 0.97189 1.21017 1.00589 0.93519 0.96419 1.17959 1.04631 0.83245 0.94313 1.43452 1.39953 1.04191 1.43174 1.21601 0.78160 0.91365 0.78884 1.90657 1.41416 1.73338 1.39181 1.21656 1.03152 0.87759 1.03011 1.18698 0.93089 0.94811 0.93034 1.21716 1.23149 0.92181 1.20954 0.90405 1.26148 0.94878 1.04696 0.94840 1.70181 1.25930 1.37840 1.23877 0.85316 0.79299 0.78294 0.77301 1.19740 1.21295 1.17816 1.21075 0.99453 0.94017 0.98024 1.21213 1.07861 0.94070 0.98488 0.93301 0.92941 0.91119 0.88187 0.90584 0.93738 0.91179 0.89200 0.82553 0.81723 0.73246 0.87191 0.87198 0.99949 0.99823 0.92887 0.87071 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.81 71.98 0.71 -1.26 16 2 C -0.11 -1.40 5.64 30.59 0.17 -1.23 16 3 C 0.07 1.22 2.25 30.59 0.07 1.29 16 4 H 0.07 1.27 5.88 -2.39 -0.01 1.26 16 5 C -0.18 -2.97 9.31 71.98 0.67 -2.30 16 6 O -0.31 -6.83 9.34 -93.29 -0.87 -7.70 16 7 C 0.11 2.67 6.55 22.50 0.15 2.82 16 8 C -0.14 -2.90 9.98 22.35 0.22 -2.68 16 9 C -0.10 -2.05 9.96 22.38 0.22 -1.82 16 10 C 0.09 2.64 6.30 38.11 0.24 2.88 16 11 N -0.66 -18.39 5.34 -303.39 -1.62 -20.01 16 12 C 0.51 19.61 7.67 87.65 0.67 20.28 16 13 O -0.57 -27.62 13.44 -3.06 -0.04 -27.66 16 14 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 15 C 0.04 2.28 4.26 29.85 0.13 2.41 16 16 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 17 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 18 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 19 N -0.94 -59.58 13.29 21.45 0.28 -59.29 16 20 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 24 C -0.11 -3.42 8.69 22.38 0.19 -3.23 16 25 C -0.20 -5.40 8.44 22.35 0.19 -5.21 16 26 H 0.05 0.75 7.82 -2.39 -0.02 0.74 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.93 7.52 -2.39 -0.02 0.91 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.43 8.05 8.82 -92.71 -0.82 7.24 16 37 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 39 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 40 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 41 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 42 H 0.11 4.30 6.24 -2.91 -0.02 4.28 16 43 H 0.14 3.35 5.75 -2.91 -0.02 3.33 16 Total: -1.00 -77.32 356.88 4.46 -72.86 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.18 Total: 18.41 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.50 Total: -22.79 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.34 Total: -79.30 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.91 Total: -35.36 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -77.32 4.46 -72.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292200262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.459 kcal (2) G-P(sol) polarization free energy of solvation -77.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds