Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 H 1.09006 * 109.47068 * 55.00464 * 3 2 1 5 5 C 1.53001 * 109.47350 * 175.00144 * 3 2 1 6 6 O 1.42905 * 109.47552 * 295.00029 * 3 2 1 7 7 C 1.35900 * 117.00168 * 155.01899 * 6 3 2 8 8 C 1.38807 * 120.01844 * 5.19521 * 7 6 3 9 9 C 1.38168 * 120.08461 * 180.02562 * 8 7 6 10 10 C 1.38158 * 120.12611 * 359.97438 * 9 8 7 11 11 C 1.38896 * 120.04044 * 359.97438 * 10 9 8 12 12 N 1.39915 * 120.04600 * 179.74806 * 11 10 9 13 13 C 1.34778 * 120.00212 * 145.25410 * 12 11 10 14 14 O 1.21286 * 119.99980 * 354.62996 * 13 12 11 15 15 C 1.50703 * 120.00031 * 174.62962 * 13 12 11 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46640 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00681 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99719 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99995 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00221 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47623 * 89.99565 * 21 19 17 23 23 H 1.48502 * 109.47469 * 210.00185 * 21 19 17 24 24 H 1.48503 * 109.46984 * 329.99601 * 21 19 17 25 25 C 1.38579 * 120.02297 * 185.18545 * 7 6 3 26 26 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47000 * 299.99864 * 1 2 3 28 28 H 1.09008 * 109.47020 * 59.99478 * 1 2 3 29 29 H 1.09005 * 109.46699 * 240.00185 * 2 1 3 30 30 H 1.08993 * 109.47510 * 120.00647 * 2 1 3 31 31 H 1.08998 * 109.47105 * 60.00082 * 5 3 2 32 32 H 1.08997 * 109.47399 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47302 * 300.00303 * 5 3 2 34 34 H 1.08005 * 119.95817 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.94142 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.98344 * 180.02562 * 10 9 8 37 37 H 0.97008 * 119.99919 * 325.25413 * 12 11 10 38 38 H 1.08998 * 109.46891 * 300.00177 * 15 13 12 39 39 H 1.09002 * 109.47062 * 59.99732 * 15 13 12 40 40 H 1.09000 * 109.46847 * 299.99779 * 16 15 13 41 41 H 1.08990 * 109.47290 * 59.99928 * 16 15 13 42 42 H 0.97003 * 119.99916 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.05994 * 0.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 1.6620 2.0814 -1.2211 7 6 1.5526 3.4359 -1.2005 8 6 1.9078 4.1440 -0.0607 9 6 1.7966 5.5210 -0.0381 10 6 1.3323 6.1975 -1.1496 11 6 0.9764 5.4943 -2.2933 12 7 0.5011 6.1788 -3.4172 13 6 0.7989 5.7329 -4.6537 14 8 1.5576 4.7972 -4.7945 15 6 0.1892 6.3970 -5.8613 16 6 0.6874 5.7032 -7.1307 17 6 0.0781 6.3677 -8.3383 18 1 -0.5972 7.2011 -8.2130 19 6 0.3828 5.9116 -9.6033 20 7 -0.1493 6.4911 -10.6571 21 14 1.5503 4.4696 -9.8202 22 1 0.7769 3.2019 -9.8191 23 1 2.2731 4.6075 -11.1101 24 1 2.5293 4.4530 -8.7036 25 6 1.0866 4.1109 -2.3174 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.9994 0.9052 -0.7161 32 1 3.9282 2.4719 0.1261 33 1 3.8532 0.9569 1.0570 34 1 2.2708 3.6179 0.8099 35 1 2.0741 6.0697 0.8498 36 1 1.2467 7.2739 -1.1296 37 1 -0.0427 6.9744 -3.3064 38 1 -0.8968 6.3206 -5.8083 39 1 0.4789 7.4475 -5.8833 40 1 1.7734 5.7792 -7.1839 41 1 0.3973 4.6528 -7.1084 42 1 0.0649 6.1699 -11.5471 43 1 0.8096 3.5615 -3.2050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292335445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -66.719041 kcal Electronic energy + Delta-G solvation = -22653.715094 eV Core-core repulsion = 19277.665978 eV Total energy + Delta-G solvation = -3376.049115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67310 -39.64417 -37.65023 -34.75311 -34.05500 -33.54250 -31.45156 -30.65990 -29.82423 -29.28209 -26.17079 -24.30384 -23.31259 -22.60370 -21.56673 -20.43565 -19.72773 -18.63793 -17.32277 -16.42886 -16.24696 -16.05694 -15.65209 -15.49321 -15.03093 -14.37923 -14.11884 -13.92678 -13.79345 -13.58297 -13.38939 -13.30323 -12.86893 -12.58655 -12.54423 -12.15846 -12.04363 -11.75630 -11.50415 -11.40364 -11.35674 -11.02048 -10.94623 -10.79694 -10.22141 -10.12777 -10.06708 -9.79931 -9.34006 -9.20623 -8.52184 -8.38351 -8.03872 -6.04290 -4.03460 1.24567 1.41592 2.91192 2.98036 3.37180 3.38018 3.44627 3.55411 3.79977 4.35740 4.50135 4.57357 4.68165 4.78284 4.90714 5.02224 5.09730 5.18015 5.24350 5.26521 5.27287 5.31197 5.40778 5.50554 5.56671 5.64252 5.77852 5.83698 5.90605 5.99297 6.01729 6.02499 6.23119 6.24767 6.38390 6.41517 6.63163 6.90782 7.32523 7.39455 7.41399 7.57394 7.76300 8.42110 8.52264 8.98242 9.58548 11.08427 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.003311 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.468014 B = 8455.616246 C = 9425.676549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.073 0.927 5 C -0.182 4.182 6 O -0.305 6.305 7 C 0.152 3.848 8 C -0.235 4.235 9 C -0.063 4.063 10 C -0.190 4.190 11 C 0.197 3.803 12 N -0.685 5.685 13 C 0.508 3.492 14 O -0.514 6.514 15 C -0.121 4.121 16 C 0.001 3.999 17 C -0.526 4.526 18 H 0.073 0.927 19 C 0.070 3.930 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.261 1.261 25 C -0.158 4.158 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.412 0.588 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.264 0.736 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -6.614 27.424 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.091 0.909 5 C -0.239 4.239 6 O -0.218 6.218 7 C 0.106 3.894 8 C -0.254 4.254 9 C -0.081 4.081 10 C -0.210 4.210 11 C 0.102 3.898 12 N -0.331 5.331 13 C 0.298 3.702 14 O -0.387 6.387 15 C -0.160 4.160 16 C -0.037 4.037 17 C -0.564 4.564 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.542 5.542 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.185 1.185 25 C -0.179 4.179 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.235 -7.435 26.856 28.054 hybrid contribution 0.418 -0.189 0.033 0.460 sum 3.653 -7.624 26.889 28.187 Atomic orbital electron populations 1.21766 0.95069 1.01894 1.02466 1.21633 0.96930 0.93939 1.03174 1.22499 0.95011 0.93943 0.86114 0.90876 1.22389 0.95328 1.03292 1.02889 1.86154 1.83600 1.16753 1.35324 1.18708 0.94562 0.82504 0.93644 1.21172 1.10352 0.95326 0.98564 1.20645 0.96614 0.93364 0.97504 1.20805 1.06574 0.99776 0.93889 1.17463 0.94885 0.90406 0.87074 1.43926 1.53728 1.30848 1.04592 1.21849 0.80440 0.83786 0.84124 1.90699 1.34000 1.28153 1.85895 1.21715 1.01314 1.01046 0.91975 1.19389 0.97215 0.96010 0.91106 1.21083 1.28495 1.17507 0.89297 0.90864 1.24966 0.95687 0.96650 0.95882 1.69910 1.44300 1.41683 0.98261 0.86805 0.82042 0.83087 0.77691 1.20186 1.21399 1.18524 1.20334 1.06340 0.92559 0.98716 0.92439 0.92892 0.91764 0.90660 0.90169 0.91298 0.91659 0.91147 0.85572 0.85688 0.85659 0.75198 0.89097 0.89198 0.95712 0.96151 0.92676 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -0.94 5.64 -26.74 -0.15 -1.09 16 3 C 0.08 0.75 2.22 -26.73 -0.06 0.69 16 4 H 0.07 0.60 6.29 -51.93 -0.33 0.27 16 5 C -0.18 -1.49 9.17 37.16 0.34 -1.15 16 6 O -0.30 -4.05 9.33 -19.43 -0.18 -4.23 16 7 C 0.15 2.10 6.60 -39.25 -0.26 1.84 16 8 C -0.23 -2.62 8.25 -39.40 -0.32 -2.94 16 9 C -0.06 -0.65 10.03 -39.64 -0.40 -1.04 16 10 C -0.19 -2.18 9.96 -39.37 -0.39 -2.57 16 11 C 0.20 2.82 6.24 -83.72 -0.52 2.30 16 12 N -0.68 -9.54 5.34 -9.88 -0.05 -9.59 16 13 C 0.51 9.23 7.55 -10.98 -0.08 9.15 16 14 O -0.51 -11.39 13.79 5.55 0.08 -11.31 16 15 C -0.12 -2.28 5.64 -27.88 -0.16 -2.43 16 16 C 0.00 0.02 3.33 -27.88 -0.09 -0.08 16 17 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 21 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 25 C -0.16 -2.53 8.59 -39.25 -0.34 -2.86 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.65 7.82 -51.92 -0.41 0.24 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.58 6.93 -51.93 -0.36 0.22 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.13 1.11 5.43 -52.48 -0.28 0.83 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.41 4.18 8.82 -40.82 -0.36 3.82 16 38 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 41 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.14 2.60 6.54 -52.49 -0.34 2.26 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -34.47 352.89 -7.89 -42.37 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.66 Total: 1.09 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.50 Total: -14.42 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.72 Total: -36.79 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.10 Total: -15.54 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.47 -7.89 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292335445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.350 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds