Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 H 1.09006 * 109.47068 * 55.00464 * 3 2 1 5 5 C 1.53001 * 109.47350 * 175.00144 * 3 2 1 6 6 O 1.42905 * 109.47552 * 295.00029 * 3 2 1 7 7 C 1.35900 * 117.00168 * 155.01899 * 6 3 2 8 8 C 1.38807 * 120.01844 * 5.19521 * 7 6 3 9 9 C 1.38168 * 120.08461 * 180.02562 * 8 7 6 10 10 C 1.38158 * 120.12611 * 359.97438 * 9 8 7 11 11 C 1.38896 * 120.04044 * 359.97438 * 10 9 8 12 12 N 1.39915 * 120.04600 * 179.74806 * 11 10 9 13 13 C 1.34778 * 120.00212 * 145.25410 * 12 11 10 14 14 O 1.21286 * 119.99980 * 354.62996 * 13 12 11 15 15 C 1.50703 * 120.00031 * 174.62962 * 13 12 11 16 16 C 1.53000 * 109.46886 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46640 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00681 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99719 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99995 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00221 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47623 * 89.99565 * 21 19 17 23 23 H 1.48502 * 109.47469 * 210.00185 * 21 19 17 24 24 H 1.48503 * 109.46984 * 329.99601 * 21 19 17 25 25 C 1.38579 * 120.02297 * 185.18545 * 7 6 3 26 26 H 1.08997 * 109.47337 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47000 * 299.99864 * 1 2 3 28 28 H 1.09008 * 109.47020 * 59.99478 * 1 2 3 29 29 H 1.09005 * 109.46699 * 240.00185 * 2 1 3 30 30 H 1.08993 * 109.47510 * 120.00647 * 2 1 3 31 31 H 1.08998 * 109.47105 * 60.00082 * 5 3 2 32 32 H 1.08997 * 109.47399 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47302 * 300.00303 * 5 3 2 34 34 H 1.08005 * 119.95817 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.94142 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.98344 * 180.02562 * 10 9 8 37 37 H 0.97008 * 119.99919 * 325.25413 * 12 11 10 38 38 H 1.08998 * 109.46891 * 300.00177 * 15 13 12 39 39 H 1.09002 * 109.47062 * 59.99732 * 15 13 12 40 40 H 1.09000 * 109.46847 * 299.99779 * 16 15 13 41 41 H 1.08990 * 109.47290 * 59.99928 * 16 15 13 42 42 H 0.97003 * 119.99916 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.05994 * 0.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 8 1.6620 2.0814 -1.2211 7 6 1.5526 3.4359 -1.2005 8 6 1.9078 4.1440 -0.0607 9 6 1.7966 5.5210 -0.0381 10 6 1.3323 6.1975 -1.1496 11 6 0.9764 5.4943 -2.2933 12 7 0.5011 6.1788 -3.4172 13 6 0.7989 5.7329 -4.6537 14 8 1.5576 4.7972 -4.7945 15 6 0.1892 6.3970 -5.8613 16 6 0.6874 5.7032 -7.1307 17 6 0.0781 6.3677 -8.3383 18 1 -0.5972 7.2011 -8.2130 19 6 0.3828 5.9116 -9.6033 20 7 -0.1493 6.4911 -10.6571 21 14 1.5503 4.4696 -9.8202 22 1 0.7769 3.2019 -9.8191 23 1 2.2731 4.6075 -11.1101 24 1 2.5293 4.4530 -8.7036 25 6 1.0866 4.1109 -2.3174 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.9994 0.9052 -0.7161 32 1 3.9282 2.4719 0.1261 33 1 3.8532 0.9569 1.0570 34 1 2.2708 3.6179 0.8099 35 1 2.0741 6.0697 0.8498 36 1 1.2467 7.2739 -1.1296 37 1 -0.0427 6.9744 -3.3064 38 1 -0.8968 6.3206 -5.8083 39 1 0.4789 7.4475 -5.8833 40 1 1.7734 5.7792 -7.1839 41 1 0.3973 4.6528 -7.1084 42 1 0.0649 6.1699 -11.5471 43 1 0.8096 3.5615 -3.2050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292335445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -88.826436 kcal Electronic energy + Delta-G solvation = -22654.673742 eV Core-core repulsion = 19277.665978 eV Total energy + Delta-G solvation = -3377.007764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74562 -40.78859 -38.70096 -35.82365 -35.56683 -34.95094 -33.40121 -31.53469 -30.65056 -30.39434 -27.98120 -25.00368 -24.54288 -23.50526 -23.02016 -21.55520 -21.07894 -19.62387 -19.21465 -17.82232 -17.29565 -17.18877 -16.80851 -16.45139 -16.25944 -16.17808 -15.25496 -15.04047 -14.88400 -14.69721 -14.48323 -14.35786 -14.23175 -14.17809 -13.48490 -13.43735 -13.03756 -12.91752 -12.75027 -12.55316 -12.30056 -12.15693 -12.02905 -11.98854 -11.81366 -11.77290 -11.53828 -11.42446 -11.17458 -10.81347 -10.79739 -9.44112 -9.01229 -8.33521 -6.36149 0.23287 0.47274 1.30900 1.33082 1.47917 1.58825 1.96143 2.32764 2.34299 2.82607 3.02274 3.69237 3.84247 3.89054 3.97127 4.00682 4.15706 4.25759 4.29955 4.34144 4.41118 4.44994 4.55889 4.59633 4.63979 4.68663 4.82071 4.93925 4.97641 5.03186 5.15418 5.20988 5.28439 5.29600 5.34301 5.36115 5.39858 5.40679 5.49690 5.58485 5.89793 6.21057 6.43190 6.53146 6.70282 7.15030 7.29282 8.82073 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.003311 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.468014 B = 8455.616246 C = 9425.676549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.072 3.928 4 H 0.089 0.911 5 C -0.178 4.178 6 O -0.332 6.332 7 C 0.139 3.861 8 C -0.227 4.227 9 C -0.054 4.054 10 C -0.182 4.182 11 C 0.174 3.826 12 N -0.663 5.663 13 C 0.513 3.487 14 O -0.562 6.562 15 C -0.113 4.113 16 C 0.004 3.996 17 C -0.528 4.528 18 H 0.054 0.946 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.935 3.065 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.194 4.194 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.431 0.569 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.010 0.990 41 H 0.007 0.993 42 H 0.268 0.732 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -6.285 31.034 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.107 0.893 5 C -0.236 4.236 6 O -0.246 6.246 7 C 0.093 3.907 8 C -0.246 4.246 9 C -0.072 4.072 10 C -0.202 4.202 11 C 0.079 3.921 12 N -0.311 5.311 13 C 0.303 3.697 14 O -0.440 6.440 15 C -0.152 4.152 16 C -0.034 4.034 17 C -0.566 4.566 18 H 0.072 0.928 19 C -0.182 4.182 20 N -0.582 5.582 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.215 4.215 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.174 0.826 37 H 0.271 0.729 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.077 0.923 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.044 -7.077 30.510 31.581 hybrid contribution 0.120 -0.285 -0.968 1.017 sum 4.165 -7.363 29.542 30.729 Atomic orbital electron populations 1.21758 0.95497 1.02331 1.01560 1.21692 0.96553 0.93336 1.03954 1.22835 0.95893 0.94436 0.85197 0.89270 1.22383 0.94321 1.03061 1.03795 1.86138 1.83846 1.16859 1.37801 1.18849 0.94886 0.82987 0.94007 1.21512 1.08902 0.95991 0.98162 1.21174 0.94601 0.93096 0.98338 1.21155 1.05109 1.01232 0.92748 1.17676 0.96441 0.90012 0.87934 1.43543 1.53164 1.30992 1.03366 1.21555 0.79876 0.83033 0.85239 1.90691 1.36351 1.30227 1.86700 1.21527 1.02276 1.01519 0.89922 1.19237 0.96087 0.95505 0.92609 1.21404 1.27689 1.16801 0.90682 0.92762 1.25760 0.97378 0.99218 0.95880 1.70013 1.45984 1.43393 0.98859 0.85879 0.80130 0.80210 0.77791 1.19517 1.20175 1.18834 1.20261 1.09045 0.93687 0.98503 0.91367 0.91775 0.94629 0.92013 0.87147 0.92768 0.92222 0.88202 0.82868 0.81519 0.82641 0.72909 0.87286 0.87004 0.97147 0.97478 0.92331 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.81 71.98 0.71 -1.71 16 2 C -0.12 -1.71 5.64 30.59 0.17 -1.54 16 3 C 0.07 1.23 2.22 30.59 0.07 1.30 16 4 H 0.09 1.21 6.29 -2.38 -0.02 1.20 16 5 C -0.18 -2.60 9.17 71.98 0.66 -1.94 16 6 O -0.33 -9.05 9.33 -92.43 -0.86 -9.91 16 7 C 0.14 3.83 6.60 22.49 0.15 3.98 16 8 C -0.23 -4.45 8.25 22.39 0.18 -4.26 16 9 C -0.05 -0.89 10.03 22.23 0.22 -0.67 16 10 C -0.18 -3.60 9.96 22.41 0.22 -3.37 16 11 C 0.17 4.85 6.24 38.14 0.24 5.08 16 12 N -0.66 -17.93 5.34 -303.55 -1.62 -19.55 16 13 C 0.51 18.81 7.55 87.66 0.66 19.47 16 14 O -0.56 -25.96 13.79 -3.05 -0.04 -26.00 16 15 C -0.11 -4.23 5.64 29.85 0.17 -4.06 16 16 C 0.00 0.18 3.33 29.85 0.10 0.28 16 17 C -0.53 -30.52 9.66 25.60 0.25 -30.28 16 18 H 0.05 3.27 7.99 -2.91 -0.02 3.25 16 19 C 0.02 0.93 5.47 84.65 0.46 1.39 16 20 N -0.94 -59.26 13.96 21.45 0.30 -58.96 16 21 Si 0.94 47.53 27.47 68.60 1.88 49.41 16 22 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.26 -13.44 6.54 99.48 0.65 -12.79 16 25 C -0.19 -6.43 8.59 22.48 0.19 -6.23 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.03 0.75 7.82 -2.38 -0.02 0.73 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.93 6.93 -2.39 -0.02 0.91 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.15 2.10 5.43 -2.91 -0.02 2.09 16 35 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.43 7.87 8.82 -92.70 -0.82 7.05 16 38 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 39 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 40 H 0.01 0.54 7.16 -2.39 -0.02 0.52 16 41 H 0.01 0.36 7.53 -2.39 -0.02 0.34 16 42 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 43 H 0.10 4.10 6.54 -2.91 -0.02 4.08 16 Total: -1.00 -78.63 352.89 4.25 -74.38 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.13 Total: 13.18 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.46 Total: -22.55 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -1.32 Total: -78.51 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.90 Total: -35.92 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.88 Total: 49.41 kcal Total: -78.63 4.25 -74.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292335445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.449 kcal (2) G-P(sol) polarization free energy of solvation -78.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds