Wall clock time and date at job start Tue Mar 31 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46937 * 2 1 4 4 H 1.09000 * 109.47444 * 305.00096 * 3 2 1 5 5 C 1.53004 * 109.47050 * 185.00196 * 3 2 1 6 6 O 1.42905 * 109.47522 * 64.99971 * 3 2 1 7 7 C 1.35896 * 117.00211 * 205.04346 * 6 3 2 8 8 C 1.38809 * 120.02259 * 354.72655 * 7 6 3 9 9 C 1.38160 * 120.08619 * 180.02562 * 8 7 6 10 10 C 1.38168 * 120.12922 * 0.23650 * 9 8 7 11 11 C 1.38893 * 120.03274 * 359.48972 * 10 9 8 12 12 N 1.39925 * 120.04314 * 180.25809 * 11 10 9 13 13 C 1.34776 * 119.99943 * 216.18450 * 12 11 10 14 14 O 1.21284 * 119.99963 * 355.20468 * 13 12 11 15 15 C 1.50698 * 119.99720 * 175.21199 * 13 12 11 16 16 C 1.53006 * 109.46763 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46763 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00383 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99677 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00084 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99750 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47262 * 60.00116 * 21 19 17 23 23 H 1.48496 * 109.46887 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46969 * 299.99949 * 21 19 17 25 25 C 1.38587 * 120.01968 * 174.75159 * 7 6 3 26 26 H 1.08996 * 109.47048 * 59.99933 * 1 2 3 27 27 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46940 * 300.00148 * 1 2 3 29 29 H 1.08996 * 109.46867 * 240.00154 * 2 1 3 30 30 H 1.08996 * 109.47048 * 120.00067 * 2 1 3 31 31 H 1.08995 * 109.47287 * 60.00087 * 5 3 2 32 32 H 1.09008 * 109.47176 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46728 * 299.99729 * 5 3 2 34 34 H 1.07999 * 119.95581 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.94028 * 179.97438 * 9 8 7 36 36 H 1.07996 * 119.98774 * 179.74565 * 10 9 8 37 37 H 0.97004 * 119.99906 * 36.17636 * 12 11 10 38 38 H 1.08998 * 109.47564 * 299.99377 * 15 13 12 39 39 H 1.09002 * 109.47248 * 59.99837 * 15 13 12 40 40 H 1.08992 * 109.47041 * 299.99823 * 16 15 13 41 41 H 1.09002 * 109.46894 * 60.00206 * 16 15 13 42 42 H 0.96999 * 119.99809 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.05865 * 359.95115 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6619 2.0814 1.2211 7 6 1.5512 3.4357 1.2002 8 6 1.9066 4.1441 0.0606 9 6 1.7951 5.5210 0.0381 10 6 1.3341 6.1978 1.1510 11 6 0.9717 5.4936 2.2921 12 7 0.4997 6.1783 3.4174 13 6 0.8168 5.7433 4.6530 14 8 1.4374 4.7105 4.7916 15 6 0.3999 6.5400 5.8623 16 6 0.8805 5.8313 7.1303 17 6 0.4642 6.6283 8.3396 18 1 -0.0882 7.5481 8.2162 19 6 0.7887 6.1832 9.6037 20 7 1.4609 5.0630 9.7540 21 14 0.2733 7.1716 11.1027 22 1 -1.2067 7.2898 11.1329 23 1 0.7396 6.4837 12.3334 24 1 0.8768 8.5267 11.0336 25 6 1.0838 4.1105 2.3168 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8532 0.9570 -1.0571 32 1 3.9281 2.4721 -0.1262 33 1 3.9994 0.9053 0.7160 34 1 2.2709 3.6183 -0.8096 35 1 2.0727 6.0699 -0.8496 36 1 1.2517 7.2744 1.1324 37 1 -0.0555 6.9662 3.3082 38 1 0.8422 7.5350 5.8121 39 1 -0.6865 6.6259 5.8841 40 1 0.4379 4.8365 7.1804 41 1 1.9669 5.7450 7.1088 42 1 1.6895 4.7501 10.6432 43 1 0.8064 3.5609 3.2042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292335446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:48 Heat of formation + Delta-G solvation = -68.726786 kcal Electronic energy + Delta-G solvation = -22562.493526 eV Core-core repulsion = 19186.357348 eV Total energy + Delta-G solvation = -3376.136178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58524 -39.53626 -37.54621 -34.66377 -33.96458 -33.50225 -31.23538 -30.54616 -29.73559 -29.11294 -25.78380 -24.24161 -23.30156 -22.52111 -21.75405 -20.46114 -19.67024 -18.54756 -17.04176 -16.27852 -16.19530 -15.80728 -15.54225 -15.41093 -14.88681 -14.46437 -14.28969 -13.83248 -13.68842 -13.49729 -13.32110 -13.23570 -12.72584 -12.42361 -12.19485 -12.06478 -11.94974 -11.68851 -11.40717 -11.30954 -11.18308 -10.93874 -10.88316 -10.73564 -10.63432 -10.00936 -9.98285 -9.68900 -9.21978 -9.07350 -8.34170 -8.29809 -7.96216 -5.96819 -4.01698 1.33221 1.49367 3.02051 3.08499 3.34281 3.38744 3.40199 3.47988 3.87294 4.41776 4.46833 4.63461 4.74168 4.85342 4.97293 5.08868 5.16820 5.25117 5.32083 5.33767 5.38060 5.38454 5.48115 5.58657 5.63270 5.69333 5.84447 5.90788 5.99980 6.07959 6.15077 6.15677 6.31457 6.33087 6.48256 6.51210 6.83620 7.00876 7.49968 7.69210 7.72820 7.82893 8.04994 8.35509 8.60889 9.06137 9.61919 11.14039 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.002922 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.968452 B = 9579.994037 C =10391.792810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.073 0.927 5 C -0.182 4.182 6 O -0.304 6.304 7 C 0.150 3.850 8 C -0.235 4.235 9 C -0.065 4.065 10 C -0.190 4.190 11 C 0.194 3.806 12 N -0.686 5.686 13 C 0.507 3.493 14 O -0.509 6.509 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.529 4.529 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.158 4.158 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.410 0.590 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.262 0.738 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -3.374 -24.890 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.091 0.909 5 C -0.239 4.239 6 O -0.218 6.218 7 C 0.104 3.896 8 C -0.254 4.254 9 C -0.083 4.083 10 C -0.211 4.211 11 C 0.099 3.901 12 N -0.332 5.332 13 C 0.297 3.703 14 O -0.381 6.381 15 C -0.168 4.168 16 C -0.001 4.001 17 C -0.568 4.568 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.179 4.179 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.246 0.754 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.332 -4.372 -24.378 24.769 hybrid contribution -0.359 1.029 0.556 1.224 sum -0.691 -3.343 -23.822 24.065 Atomic orbital electron populations 1.21765 0.95104 1.01857 1.02457 1.21633 0.96905 0.93978 1.03163 1.22489 0.95002 0.93928 0.86151 0.90936 1.22390 0.95352 1.03290 1.02863 1.86160 1.83594 1.16792 1.35223 1.18756 0.94653 0.82500 0.93688 1.21164 1.10356 0.95320 0.98588 1.20627 0.96870 0.93368 0.97468 1.20812 1.06570 0.99708 0.93963 1.17503 0.95109 0.90411 0.87081 1.43950 1.53025 1.31596 1.04674 1.21882 0.78127 0.86281 0.83989 1.90696 1.38157 1.23594 1.85676 1.21912 1.02129 0.99694 0.93066 1.18917 0.97431 0.95664 0.88090 1.21160 1.36324 1.08206 0.91063 0.92595 1.25026 0.95146 0.95068 0.99103 1.69985 1.38829 1.21029 1.22883 0.86640 0.78904 0.80136 0.82176 1.20236 1.21272 1.20236 1.20531 1.05885 0.92691 0.98777 0.92936 0.92467 0.91734 0.90214 0.90622 0.91198 0.91666 0.91261 0.85647 0.85782 0.85750 0.75401 0.89795 0.89810 0.95690 0.95717 0.92844 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.81 37.16 0.36 -0.96 16 2 C -0.12 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.08 0.79 2.22 -26.73 -0.06 0.73 16 4 H 0.07 0.63 6.29 -51.93 -0.33 0.30 16 5 C -0.18 -1.59 9.18 37.16 0.34 -1.25 16 6 O -0.30 -4.25 9.33 -19.41 -0.18 -4.43 16 7 C 0.15 2.18 6.60 -39.24 -0.26 1.92 16 8 C -0.23 -2.76 8.25 -39.40 -0.32 -3.09 16 9 C -0.06 -0.70 10.03 -39.64 -0.40 -1.10 16 10 C -0.19 -2.29 9.97 -39.36 -0.39 -2.69 16 11 C 0.19 2.92 6.28 -83.71 -0.53 2.40 16 12 N -0.69 -10.10 5.33 -9.88 -0.05 -10.15 16 13 C 0.51 9.78 7.67 -10.99 -0.08 9.69 16 14 O -0.51 -11.97 13.46 5.55 0.07 -11.89 16 15 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 16 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 17 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.43 13.29 55.43 0.74 -26.70 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.16 -2.65 8.63 -39.25 -0.34 -2.99 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.61 6.93 -51.92 -0.36 0.25 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.13 1.18 5.43 -52.49 -0.28 0.89 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.41 4.44 8.83 -40.82 -0.36 4.08 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.15 2.88 6.28 -52.49 -0.33 2.55 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -34.32 356.10 -8.27 -42.59 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.68 Total: 2.57 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.51 Total: -13.97 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.68 Total: -36.85 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.11 Total: -16.33 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.32 -8.27 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292335446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.141 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds