Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46937 * 2 1 4 4 H 1.09000 * 109.47444 * 305.00096 * 3 2 1 5 5 C 1.53004 * 109.47050 * 185.00196 * 3 2 1 6 6 O 1.42905 * 109.47522 * 64.99971 * 3 2 1 7 7 C 1.35896 * 117.00211 * 205.04346 * 6 3 2 8 8 C 1.38809 * 120.02259 * 354.72655 * 7 6 3 9 9 C 1.38160 * 120.08619 * 180.02562 * 8 7 6 10 10 C 1.38168 * 120.12922 * 0.23650 * 9 8 7 11 11 C 1.38893 * 120.03274 * 359.48972 * 10 9 8 12 12 N 1.39925 * 120.04314 * 180.25809 * 11 10 9 13 13 C 1.34776 * 119.99943 * 216.18450 * 12 11 10 14 14 O 1.21284 * 119.99963 * 355.20468 * 13 12 11 15 15 C 1.50698 * 119.99720 * 175.21199 * 13 12 11 16 16 C 1.53006 * 109.46763 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.46763 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00383 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99677 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00084 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99750 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47262 * 60.00116 * 21 19 17 23 23 H 1.48496 * 109.46887 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46969 * 299.99949 * 21 19 17 25 25 C 1.38587 * 120.01968 * 174.75159 * 7 6 3 26 26 H 1.08996 * 109.47048 * 59.99933 * 1 2 3 27 27 H 1.08996 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46940 * 300.00148 * 1 2 3 29 29 H 1.08996 * 109.46867 * 240.00154 * 2 1 3 30 30 H 1.08996 * 109.47048 * 120.00067 * 2 1 3 31 31 H 1.08995 * 109.47287 * 60.00087 * 5 3 2 32 32 H 1.09008 * 109.47176 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46728 * 299.99729 * 5 3 2 34 34 H 1.07999 * 119.95581 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.94028 * 179.97438 * 9 8 7 36 36 H 1.07996 * 119.98774 * 179.74565 * 10 9 8 37 37 H 0.97004 * 119.99906 * 36.17636 * 12 11 10 38 38 H 1.08998 * 109.47564 * 299.99377 * 15 13 12 39 39 H 1.09002 * 109.47248 * 59.99837 * 15 13 12 40 40 H 1.08992 * 109.47041 * 299.99823 * 16 15 13 41 41 H 1.09002 * 109.46894 * 60.00206 * 16 15 13 42 42 H 0.96999 * 119.99809 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.05865 * 359.95115 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 1.6619 2.0814 1.2211 7 6 1.5512 3.4357 1.2002 8 6 1.9066 4.1441 0.0606 9 6 1.7951 5.5210 0.0381 10 6 1.3341 6.1978 1.1510 11 6 0.9717 5.4936 2.2921 12 7 0.4997 6.1783 3.4174 13 6 0.8168 5.7433 4.6530 14 8 1.4374 4.7105 4.7916 15 6 0.3999 6.5400 5.8623 16 6 0.8805 5.8313 7.1303 17 6 0.4642 6.6283 8.3396 18 1 -0.0882 7.5481 8.2162 19 6 0.7887 6.1832 9.6037 20 7 1.4609 5.0630 9.7540 21 14 0.2733 7.1716 11.1027 22 1 -1.2067 7.2898 11.1329 23 1 0.7396 6.4837 12.3334 24 1 0.8768 8.5267 11.0336 25 6 1.0838 4.1105 2.3168 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8532 0.9570 -1.0571 32 1 3.9281 2.4721 -0.1262 33 1 3.9994 0.9053 0.7160 34 1 2.2709 3.6183 -0.8096 35 1 2.0727 6.0699 -0.8496 36 1 1.2517 7.2744 1.1324 37 1 -0.0555 6.9662 3.3082 38 1 0.8422 7.5350 5.8121 39 1 -0.6865 6.6259 5.8841 40 1 0.4379 4.8365 7.1804 41 1 1.9669 5.7450 7.1088 42 1 1.6895 4.7501 10.6432 43 1 0.8064 3.5609 3.2042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292335446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = -90.887398 kcal Electronic energy + Delta-G solvation = -22563.454482 eV Core-core repulsion = 19186.357348 eV Total energy + Delta-G solvation = -3377.097134 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.73236 -40.77054 -38.67900 -35.80875 -35.57545 -34.94192 -33.12431 -31.49600 -30.64009 -30.30111 -27.70931 -25.00671 -24.69038 -23.52458 -23.22172 -21.58221 -21.08358 -19.58269 -18.85552 -17.70375 -17.31070 -17.11620 -16.80493 -16.46905 -16.40565 -16.15630 -15.20327 -15.01149 -14.84332 -14.49554 -14.36197 -14.24839 -14.15901 -14.11647 -13.43923 -13.28990 -12.99760 -12.78240 -12.74891 -12.54962 -12.52382 -12.30615 -12.02771 -11.93540 -11.77041 -11.66591 -11.53937 -11.33583 -11.13503 -10.72536 -10.56784 -9.44463 -9.00659 -8.18756 -6.33315 0.25194 0.48103 1.41750 1.46554 1.54222 1.61222 1.98134 2.34251 2.44623 2.82964 3.14283 3.69636 3.87494 3.92782 3.98129 4.01082 4.16377 4.27133 4.31536 4.41837 4.44905 4.51614 4.56631 4.61583 4.63997 4.70269 4.83283 4.95200 5.02702 5.05012 5.15868 5.21208 5.30853 5.34567 5.36609 5.40907 5.47869 5.50738 5.59983 5.83110 5.91666 6.15356 6.46635 6.54589 6.84915 7.20248 7.37126 8.93825 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.002922 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.968452 B = 9579.994037 C =10391.792810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.071 3.929 4 H 0.090 0.910 5 C -0.178 4.178 6 O -0.333 6.333 7 C 0.136 3.864 8 C -0.226 4.226 9 C -0.054 4.054 10 C -0.180 4.180 11 C 0.171 3.829 12 N -0.662 5.662 13 C 0.509 3.491 14 O -0.565 6.565 15 C -0.115 4.115 16 C 0.041 3.959 17 C -0.544 4.544 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.975 3.025 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.261 1.261 25 C -0.196 4.196 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.431 0.569 38 H 0.113 0.887 39 H 0.111 0.889 40 H -0.019 1.019 41 H -0.018 1.018 42 H 0.263 0.737 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 -0.771 -27.779 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.016 3.984 4 H 0.108 0.892 5 C -0.236 4.236 6 O -0.248 6.248 7 C 0.090 3.910 8 C -0.245 4.245 9 C -0.073 4.073 10 C -0.201 4.201 11 C 0.076 3.924 12 N -0.310 5.310 13 C 0.299 3.701 14 O -0.442 6.442 15 C -0.154 4.154 16 C 0.004 3.996 17 C -0.582 4.582 18 H 0.097 0.903 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.215 1.215 24 H -0.185 1.185 25 C -0.218 4.218 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.172 0.828 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.271 0.729 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.000 1.000 41 H 0.000 1.000 42 H 0.071 0.929 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.877 -1.723 -27.327 27.396 hybrid contribution -0.176 0.133 1.317 1.335 sum -1.053 -1.589 -26.011 26.080 Atomic orbital electron populations 1.21757 0.95486 1.02344 1.01529 1.21696 0.96578 0.93337 1.03945 1.22844 0.95907 0.94458 0.85189 0.89184 1.22386 0.94329 1.03055 1.03793 1.86144 1.83862 1.16945 1.37860 1.18892 0.95009 0.82992 0.94057 1.21514 1.08815 0.96039 0.98094 1.21182 0.94695 0.93043 0.98347 1.21173 1.04960 1.01254 0.92666 1.17730 0.96715 0.89940 0.88026 1.43519 1.52403 1.31742 1.03302 1.21715 0.77618 0.85408 0.85389 1.90696 1.40964 1.25899 1.86614 1.21668 1.03743 0.99875 0.90153 1.18699 0.94524 0.94472 0.91950 1.21683 1.36036 1.08877 0.91569 0.90288 1.26172 0.94975 0.96172 1.03244 1.70181 1.40555 1.23383 1.23742 0.85350 0.79146 0.78593 0.77016 1.18626 1.21454 1.18546 1.20423 1.08854 0.93982 0.98494 0.91682 0.91307 0.94774 0.87020 0.92129 0.88074 0.92234 0.92879 0.82798 0.81351 0.82458 0.72890 0.86918 0.87058 1.00036 0.99988 0.92870 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.81 71.98 0.71 -1.93 16 2 C -0.12 -1.90 5.64 30.59 0.17 -1.73 16 3 C 0.07 1.35 2.22 30.59 0.07 1.41 16 4 H 0.09 1.35 6.29 -2.39 -0.02 1.34 16 5 C -0.18 -2.89 9.18 71.98 0.66 -2.23 16 6 O -0.33 -9.88 9.33 -92.38 -0.86 -10.74 16 7 C 0.14 4.08 6.60 22.49 0.15 4.23 16 8 C -0.23 -4.78 8.25 22.39 0.18 -4.60 16 9 C -0.05 -0.97 10.03 22.23 0.22 -0.74 16 10 C -0.18 -3.81 9.97 22.41 0.22 -3.59 16 11 C 0.17 5.12 6.28 38.14 0.24 5.36 16 12 N -0.66 -19.35 5.33 -303.55 -1.62 -20.97 16 13 C 0.51 20.46 7.67 87.66 0.67 21.13 16 14 O -0.56 -29.03 13.46 -3.04 -0.04 -29.07 16 15 C -0.11 -4.59 5.64 29.85 0.17 -4.43 16 16 C 0.04 2.32 4.26 29.85 0.13 2.45 16 17 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 18 H 0.08 4.06 7.74 -2.91 -0.02 4.03 16 19 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 20 N -0.94 -60.47 13.29 21.45 0.28 -60.18 16 21 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 C -0.20 -7.08 8.63 22.49 0.19 -6.89 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.03 0.78 7.82 -2.38 -0.02 0.76 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.02 6.93 -2.38 -0.02 1.01 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.15 2.32 5.43 -2.91 -0.02 2.30 16 35 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.43 8.46 8.83 -92.71 -0.82 7.65 16 38 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 39 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 40 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 41 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 42 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 43 H 0.10 4.54 6.28 -2.91 -0.02 4.52 16 Total: -1.00 -82.94 356.10 4.46 -78.48 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.18 Total: 18.29 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.48 Total: -22.43 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.33 Total: -81.15 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.90 Total: -39.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -82.94 4.46 -78.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292335446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.404 kcal (2) G-P(sol) polarization free energy of solvation -82.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds