Wall clock time and date at job start Tue Mar 31 2020 06:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46831 * 2 1 4 4 N 1.46503 * 109.46820 * 182.13098 * 3 2 1 5 5 C 1.37105 * 119.99716 * 263.80705 * 4 3 2 6 6 H 1.08003 * 119.99722 * 193.25569 * 5 4 3 7 7 C 1.38947 * 120.00030 * 13.25342 * 5 4 3 8 8 N 1.31415 * 120.00119 * 16.93584 * 7 5 4 9 9 Si 1.86800 * 120.00030 * 196.93282 * 7 5 4 10 10 H 1.48502 * 109.47102 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47101 * 120.00164 * 9 7 5 12 12 H 1.48498 * 109.47440 * 240.00266 * 9 7 5 13 13 C 1.34771 * 120.00129 * 83.80699 * 4 3 2 14 14 O 1.21289 * 120.00111 * 5.47843 * 13 4 3 15 15 C 1.50706 * 119.99996 * 185.47195 * 13 4 3 16 16 H 1.08999 * 109.47218 * 46.04395 * 15 13 4 17 17 C 1.53003 * 109.47101 * 286.04410 * 15 13 4 18 18 C 1.50703 * 109.47047 * 173.94986 * 17 15 13 19 19 C 1.38233 * 119.99867 * 90.00196 * 18 17 15 20 20 C 1.38228 * 119.99826 * 179.72666 * 19 18 17 21 21 C 1.38230 * 120.00081 * 0.25152 * 20 19 18 22 22 C 1.38238 * 120.00360 * 0.02562 * 21 20 19 23 23 C 1.38231 * 119.99985 * 270.23708 * 18 17 15 24 24 O 1.42898 * 109.47168 * 166.04900 * 15 13 4 25 25 C 1.42903 * 113.99691 * 270.00199 * 24 15 13 26 26 H 1.08994 * 109.47536 * 300.00003 * 1 2 3 27 27 H 1.09006 * 109.47031 * 60.00256 * 1 2 3 28 28 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47536 * 239.99997 * 2 1 3 30 30 H 1.08993 * 109.47338 * 119.99955 * 2 1 3 31 31 H 1.09001 * 109.46938 * 62.13477 * 3 2 1 32 32 H 1.08992 * 109.47430 * 302.12806 * 3 2 1 33 33 H 0.96998 * 119.99509 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46860 * 53.94866 * 17 15 13 35 35 H 1.09005 * 109.47176 * 293.95112 * 17 15 13 36 36 H 1.08004 * 119.99748 * 359.97438 * 19 18 17 37 37 H 1.08009 * 119.99880 * 180.27946 * 20 19 18 38 38 H 1.08001 * 120.00025 * 180.02562 * 21 20 19 39 39 H 1.07990 * 120.00168 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.00140 * 0.02562 * 23 18 17 41 41 H 1.08996 * 109.47577 * 179.97438 * 25 24 15 42 42 H 1.09000 * 109.46770 * 300.00072 * 25 24 15 43 43 H 1.09005 * 109.47502 * 59.99606 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5041 1.4429 -0.0514 5 6 4.2305 1.5565 1.1058 6 1 5.2880 1.7714 1.0607 7 6 3.6063 1.3952 2.3367 8 7 2.4282 0.8169 2.4052 9 14 4.4417 2.0002 3.8941 10 1 5.7507 2.6106 3.5485 11 1 3.5819 3.0149 4.5548 12 1 4.6565 0.8568 4.8169 13 6 4.1368 1.3315 -1.2361 14 8 3.4980 1.3311 -2.2671 15 6 5.6381 1.2077 -1.2798 16 1 5.9640 0.4756 -0.5408 17 6 6.2712 2.5649 -0.9666 18 6 7.7667 2.4100 -0.8637 19 6 8.5562 2.5610 -1.9883 20 6 9.9284 2.4244 -1.8928 21 6 10.5107 2.1317 -0.6738 22 6 9.7207 1.9750 0.4498 23 6 8.3485 2.1120 0.3543 24 8 6.0433 0.7825 -2.5825 25 6 6.1163 -0.6366 -2.7341 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.7081 1.9452 0.9085 32 1 1.6458 1.9673 -0.8702 33 1 1.9927 0.7040 3.2645 34 1 5.8787 2.9393 -0.0211 35 1 6.0328 3.2696 -1.7634 36 1 8.1012 2.7896 -2.9407 37 1 10.5456 2.5469 -2.7706 38 1 11.5828 2.0254 -0.5991 39 1 10.1757 1.7467 1.4022 40 1 7.7313 1.9898 1.2321 41 1 6.4299 -0.8780 -3.7496 42 1 6.8382 -1.0411 -2.0246 43 1 5.1359 -1.0733 -2.5436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294691541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:03 Heat of formation + Delta-G solvation = -50.656152 kcal Electronic energy + Delta-G solvation = -24273.951625 eV Core-core repulsion = 20898.599048 eV Total energy + Delta-G solvation = -3375.352576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.50036 -38.55229 -36.81301 -34.96645 -33.19723 -32.21146 -31.37766 -30.63008 -28.88412 -26.10776 -25.62562 -24.89796 -23.10708 -22.28306 -20.79279 -20.37875 -19.14802 -17.46643 -16.63262 -16.42812 -15.50296 -15.04597 -14.71688 -14.61584 -14.47052 -14.16910 -13.80049 -13.51376 -13.32950 -13.14852 -12.93029 -12.55059 -12.26844 -12.16236 -11.83596 -11.70494 -11.36460 -11.23369 -10.98879 -10.83206 -10.76409 -10.71362 -10.48361 -10.36587 -10.27852 -10.09968 -9.65914 -9.55445 -8.88819 -8.67217 -8.50414 -7.98894 -7.75425 -6.39682 -3.97137 1.60169 1.65791 3.02806 3.15346 3.16832 3.79300 3.95945 4.06212 4.28425 4.82062 4.97213 5.13356 5.14488 5.24243 5.39329 5.65960 5.72247 5.78319 5.79326 5.84554 5.96788 6.02367 6.07888 6.11089 6.16486 6.19301 6.30282 6.36534 6.44873 6.55696 6.69817 6.72557 6.72869 6.89287 6.98321 7.00549 7.07129 7.22762 7.29783 7.45148 7.67691 7.71663 7.80851 8.40468 9.01201 9.49878 9.90632 10.54889 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.006189 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.522655 B = 4523.149856 C = 6019.014504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.141 3.859 4 N -0.438 5.438 5 C -0.339 4.339 6 H 0.103 0.897 7 C 0.037 3.963 8 N -0.855 5.855 9 Si 0.915 3.085 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.432 3.568 14 O -0.594 6.594 15 C 0.100 3.900 16 H 0.077 0.923 17 C -0.082 4.082 18 C -0.067 4.067 19 C -0.102 4.102 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.124 4.124 23 C -0.117 4.117 24 O -0.364 6.364 25 C 0.038 3.962 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.034 0.966 33 H 0.268 0.732 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.325 0.543 -1.342 9.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.018 3.982 4 N -0.157 5.157 5 C -0.467 4.467 6 H 0.121 0.879 7 C -0.168 4.168 8 N -0.494 5.494 9 Si 0.741 3.259 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.219 3.781 14 O -0.480 6.480 15 C 0.039 3.961 16 H 0.095 0.905 17 C -0.119 4.119 18 C -0.067 4.067 19 C -0.120 4.120 20 C -0.144 4.144 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.135 4.135 24 O -0.282 6.282 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.896 0.628 -1.831 9.104 hybrid contribution 0.283 -0.127 1.153 1.195 sum 9.180 0.501 -0.678 9.218 Atomic orbital electron populations 1.21584 0.97670 0.99725 1.00365 1.21829 0.93674 0.98559 1.01794 1.21241 0.79853 0.96735 1.00333 1.43855 1.05751 1.61160 1.04981 1.19871 0.94896 1.48621 0.83275 0.87941 1.25242 0.96457 0.95887 0.99230 1.70101 1.15516 1.38116 1.25635 0.86057 0.79509 0.78742 0.81573 1.19131 1.20481 1.20737 1.20619 0.89726 0.83604 0.84111 1.90533 1.67611 1.56469 1.33401 1.21744 0.92558 0.96662 0.85180 0.90491 1.20817 0.90344 0.96394 1.04345 1.19919 0.95590 0.97977 0.93192 1.21098 0.93254 0.99321 0.98321 1.21086 0.94984 1.00911 0.97417 1.21048 0.99321 1.01503 0.93177 1.21080 0.93881 1.00873 0.98337 1.21200 0.94917 0.99666 0.97699 1.87853 1.87787 1.21219 1.31299 1.22663 0.99959 0.82240 1.01066 0.93016 0.94457 0.94339 0.95262 0.88342 0.88549 0.94768 0.92154 0.87514 0.90320 0.85958 0.86601 0.86756 0.86485 0.85734 0.90311 0.94758 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 37.16 0.37 -2.23 16 2 C -0.12 -2.74 5.71 -26.73 -0.15 -2.89 16 3 C 0.14 3.42 4.56 -4.04 -0.02 3.40 16 4 N -0.44 -10.78 2.64 -114.81 -0.30 -11.08 16 5 C -0.34 -8.02 8.46 -14.93 -0.13 -8.15 16 6 H 0.10 2.25 4.80 -52.48 -0.25 2.00 16 7 C 0.04 0.86 5.05 -17.47 -0.09 0.77 16 8 N -0.86 -20.51 8.18 55.50 0.45 -20.06 16 9 Si 0.91 18.26 29.58 -169.99 -5.03 13.23 16 10 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.43 10.58 6.88 -10.99 -0.08 10.50 16 14 O -0.59 -16.34 16.21 -13.96 -0.23 -16.56 16 15 C 0.10 2.05 1.66 -27.88 -0.05 2.01 16 16 H 0.08 1.59 7.23 -51.93 -0.38 1.21 16 17 C -0.08 -1.49 4.65 -27.88 -0.13 -1.62 16 18 C -0.07 -1.08 4.98 -104.62 -0.52 -1.60 16 19 C -0.10 -1.52 9.43 -39.59 -0.37 -1.89 16 20 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 21 C -0.13 -1.65 10.05 -39.58 -0.40 -2.04 16 22 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 23 C -0.12 -1.79 9.70 -39.59 -0.38 -2.17 16 24 O -0.36 -7.35 9.46 -54.74 -0.52 -7.87 16 25 C 0.04 0.64 10.81 101.05 1.09 1.74 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.41 6.10 -51.93 -0.32 2.09 16 31 H 0.10 2.39 5.93 -51.93 -0.31 2.09 16 32 H 0.03 0.85 7.54 -51.93 -0.39 0.45 16 33 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 34 H 0.11 2.00 5.68 -51.93 -0.30 1.70 16 35 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 36 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 37 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -28.02 350.25 -8.56 -36.58 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.56 Total: 8.75 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.65 Total: -8.26 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.15 Total: -31.14 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.74 Total: -24.43 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.02 -8.56 -36.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294691541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.077 kcal (2) G-P(sol) polarization free energy of solvation -28.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds