Wall clock time and date at job start Tue Mar 31 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46831 * 2 1 4 4 N 1.46503 * 109.46820 * 182.13098 * 3 2 1 5 5 C 1.37105 * 119.99716 * 263.80705 * 4 3 2 6 6 H 1.08003 * 119.99722 * 193.25569 * 5 4 3 7 7 C 1.38947 * 120.00030 * 13.25342 * 5 4 3 8 8 N 1.31415 * 120.00119 * 16.93584 * 7 5 4 9 9 Si 1.86800 * 120.00030 * 196.93282 * 7 5 4 10 10 H 1.48502 * 109.47102 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47101 * 120.00164 * 9 7 5 12 12 H 1.48498 * 109.47440 * 240.00266 * 9 7 5 13 13 C 1.34771 * 120.00129 * 83.80699 * 4 3 2 14 14 O 1.21289 * 120.00111 * 5.47843 * 13 4 3 15 15 C 1.50706 * 119.99996 * 185.47195 * 13 4 3 16 16 H 1.08999 * 109.47218 * 46.04395 * 15 13 4 17 17 C 1.53003 * 109.47101 * 286.04410 * 15 13 4 18 18 C 1.50703 * 109.47047 * 173.94986 * 17 15 13 19 19 C 1.38233 * 119.99867 * 90.00196 * 18 17 15 20 20 C 1.38228 * 119.99826 * 179.72666 * 19 18 17 21 21 C 1.38230 * 120.00081 * 0.25152 * 20 19 18 22 22 C 1.38238 * 120.00360 * 0.02562 * 21 20 19 23 23 C 1.38231 * 119.99985 * 270.23708 * 18 17 15 24 24 O 1.42898 * 109.47168 * 166.04900 * 15 13 4 25 25 C 1.42903 * 113.99691 * 270.00199 * 24 15 13 26 26 H 1.08994 * 109.47536 * 300.00003 * 1 2 3 27 27 H 1.09006 * 109.47031 * 60.00256 * 1 2 3 28 28 H 1.09001 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47536 * 239.99997 * 2 1 3 30 30 H 1.08993 * 109.47338 * 119.99955 * 2 1 3 31 31 H 1.09001 * 109.46938 * 62.13477 * 3 2 1 32 32 H 1.08992 * 109.47430 * 302.12806 * 3 2 1 33 33 H 0.96998 * 119.99509 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46860 * 53.94866 * 17 15 13 35 35 H 1.09005 * 109.47176 * 293.95112 * 17 15 13 36 36 H 1.08004 * 119.99748 * 359.97438 * 19 18 17 37 37 H 1.08009 * 119.99880 * 180.27946 * 20 19 18 38 38 H 1.08001 * 120.00025 * 180.02562 * 21 20 19 39 39 H 1.07990 * 120.00168 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.00140 * 0.02562 * 23 18 17 41 41 H 1.08996 * 109.47577 * 179.97438 * 25 24 15 42 42 H 1.09000 * 109.46770 * 300.00072 * 25 24 15 43 43 H 1.09005 * 109.47502 * 59.99606 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5041 1.4429 -0.0514 5 6 4.2305 1.5565 1.1058 6 1 5.2880 1.7714 1.0607 7 6 3.6063 1.3952 2.3367 8 7 2.4282 0.8169 2.4052 9 14 4.4417 2.0002 3.8941 10 1 5.7507 2.6106 3.5485 11 1 3.5819 3.0149 4.5548 12 1 4.6565 0.8568 4.8169 13 6 4.1368 1.3315 -1.2361 14 8 3.4980 1.3311 -2.2671 15 6 5.6381 1.2077 -1.2798 16 1 5.9640 0.4756 -0.5408 17 6 6.2712 2.5649 -0.9666 18 6 7.7667 2.4100 -0.8637 19 6 8.5562 2.5610 -1.9883 20 6 9.9284 2.4244 -1.8928 21 6 10.5107 2.1317 -0.6738 22 6 9.7207 1.9750 0.4498 23 6 8.3485 2.1120 0.3543 24 8 6.0433 0.7825 -2.5825 25 6 6.1163 -0.6366 -2.7341 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.7081 1.9452 0.9085 32 1 1.6458 1.9673 -0.8702 33 1 1.9927 0.7040 3.2645 34 1 5.8787 2.9393 -0.0211 35 1 6.0328 3.2696 -1.7634 36 1 8.1012 2.7896 -2.9407 37 1 10.5456 2.5469 -2.7706 38 1 11.5828 2.0254 -0.5991 39 1 10.1757 1.7467 1.4022 40 1 7.7313 1.9898 1.2321 41 1 6.4299 -0.8780 -3.7496 42 1 6.8382 -1.0411 -2.0246 43 1 5.1359 -1.0733 -2.5436 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294691541.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:02 Heat of formation + Delta-G solvation = -63.488554 kcal Electronic energy + Delta-G solvation = -24274.508079 eV Core-core repulsion = 20898.599048 eV Total energy + Delta-G solvation = -3375.909031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10595 -39.89795 -38.44293 -36.89040 -34.66025 -33.91774 -33.18221 -31.68373 -30.26361 -27.75890 -27.16405 -26.63196 -24.68493 -23.34821 -22.34246 -21.86136 -21.01765 -19.24388 -18.33217 -17.56909 -17.17638 -16.49189 -16.29414 -16.05803 -15.78746 -15.75720 -15.45808 -15.28921 -15.04461 -14.36921 -14.19400 -14.00922 -13.78042 -13.54978 -13.40644 -13.30592 -13.05911 -12.67112 -12.62941 -12.48136 -12.17231 -12.11432 -12.03385 -11.96394 -11.84907 -11.65154 -11.40657 -11.28399 -10.78541 -9.99353 -9.72403 -9.67870 -9.47921 -8.22131 -5.86447 0.51291 0.59620 1.40962 1.51240 1.61638 1.95875 2.28198 2.64641 2.99246 3.12061 3.15329 3.85701 4.01732 4.18342 4.23871 4.24962 4.27537 4.38004 4.42084 4.48656 4.51179 4.55132 4.59495 4.68142 4.72438 4.74710 4.87810 4.88272 5.00510 5.07905 5.19537 5.22741 5.27019 5.28248 5.44985 5.55886 5.66642 5.69593 5.81927 5.83851 5.89930 6.13418 6.21899 6.52924 7.13986 7.59577 8.00734 8.72999 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.006189 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.522655 B = 4523.149856 C = 6019.014504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.143 3.857 4 N -0.443 5.443 5 C -0.360 4.360 6 H 0.116 0.884 7 C 0.001 3.999 8 N -0.873 5.873 9 Si 0.979 3.021 10 H -0.254 1.254 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.414 3.586 14 O -0.636 6.636 15 C 0.113 3.887 16 H 0.075 0.925 17 C -0.071 4.071 18 C -0.085 4.085 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.132 4.132 24 O -0.376 6.376 25 C 0.033 3.967 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.007 0.993 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.271 0.729 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.777 0.468 -0.348 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C 0.020 3.980 4 N -0.161 5.161 5 C -0.486 4.486 6 H 0.133 0.867 7 C -0.203 4.203 8 N -0.511 5.511 9 Si 0.803 3.197 10 H -0.177 1.177 11 H -0.207 1.207 12 H -0.207 1.207 13 C 0.204 3.796 14 O -0.525 6.525 15 C 0.052 3.948 16 H 0.093 0.907 17 C -0.109 4.109 18 C -0.085 4.085 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.150 4.150 24 O -0.294 6.294 25 C -0.063 4.063 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.071 0.929 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.354 0.548 -0.828 11.397 hybrid contribution -0.477 -0.142 0.844 0.980 sum 10.877 0.407 0.016 10.884 Atomic orbital electron populations 1.21502 0.94699 1.01330 1.00903 1.21677 0.96277 0.97003 0.99778 1.21211 0.80294 0.97441 0.99088 1.44095 1.05986 1.60416 1.05621 1.20260 0.95676 1.49501 0.83200 0.86656 1.26044 0.97079 0.95413 1.01716 1.70189 1.16459 1.37980 1.26506 0.85064 0.79067 0.77954 0.77579 1.17692 1.20732 1.20663 1.21366 0.91519 0.83278 0.83476 1.90482 1.68883 1.58525 1.34581 1.21588 0.89818 0.97916 0.85451 0.90697 1.20642 0.92299 0.94651 1.03274 1.19743 0.94040 1.00295 0.94426 1.21166 0.94392 0.99968 0.97707 1.21409 0.94192 0.99683 0.98891 1.21465 1.00988 0.99535 0.92363 1.21391 0.92980 0.99939 0.99927 1.21261 0.96131 1.00535 0.97064 1.87836 1.87441 1.23019 1.31059 1.22856 0.99327 0.80689 1.03424 0.92548 0.93782 0.92211 0.97411 0.89881 0.89188 0.96243 0.91865 0.88471 0.91300 0.86426 0.83911 0.83423 0.84078 0.86315 0.87406 0.92925 0.96281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.91 71.98 0.71 -4.09 16 2 C -0.11 -5.10 5.71 30.60 0.17 -4.93 16 3 C 0.14 7.16 4.56 86.38 0.39 7.56 16 4 N -0.44 -22.59 2.64 -635.53 -1.68 -24.27 16 5 C -0.36 -17.27 8.46 84.04 0.71 -16.56 16 6 H 0.12 5.13 4.80 -2.91 -0.01 5.12 16 7 C 0.00 0.03 5.05 84.93 0.43 0.46 16 8 N -0.87 -42.08 8.18 21.66 0.18 -41.90 16 9 Si 0.98 36.83 29.58 68.60 2.03 38.86 16 10 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 11 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -10.52 7.11 99.48 0.71 -9.82 16 13 C 0.41 21.17 6.88 87.66 0.60 21.77 16 14 O -0.64 -36.61 16.21 15.60 0.25 -36.36 16 15 C 0.11 4.81 1.66 29.85 0.05 4.86 16 16 H 0.08 3.16 7.23 -2.39 -0.02 3.15 16 17 C -0.07 -2.66 4.65 29.85 0.14 -2.53 16 18 C -0.08 -2.72 4.98 -19.87 -0.10 -2.82 16 19 C -0.11 -3.28 9.43 22.27 0.21 -3.07 16 20 C -0.12 -2.83 10.05 22.27 0.22 -2.61 16 21 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 22 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 23 C -0.13 -3.85 9.70 22.27 0.22 -3.64 16 24 O -0.38 -15.40 9.46 -130.32 -1.23 -16.63 16 25 C 0.03 1.13 10.81 113.37 1.23 2.36 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 4.16 6.10 -2.39 -0.01 4.15 16 31 H 0.09 4.60 5.93 -2.39 -0.01 4.59 16 32 H 0.02 1.01 7.54 -2.39 -0.02 0.99 16 33 H 0.27 12.33 8.31 -92.71 -0.77 11.56 16 34 H 0.10 3.75 5.68 -2.39 -0.01 3.74 16 35 H 0.07 2.64 8.09 -2.38 -0.02 2.62 16 36 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 37 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.59 8.06 -2.92 -0.02 2.57 16 40 H 0.12 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.05 1.58 8.08 -2.39 -0.02 1.56 16 43 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -61.60 350.25 5.97 -55.63 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.99 Total: 33.03 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.44 Total: -8.35 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -1.50 Total: -66.17 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.98 Total: -52.99 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -61.60 5.97 -55.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294691541.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.863 kcal (2) G-P(sol) polarization free energy of solvation -61.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds