Wall clock time and date at job start Tue Mar 31 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47286 * 54.99885 * 16 14 13 18 18 C 1.53002 * 109.47230 * 295.00012 * 16 14 13 19 19 C 1.50706 * 109.47143 * 174.99969 * 18 16 14 20 20 C 1.38232 * 119.99961 * 269.72677 * 19 18 16 21 21 C 1.38233 * 119.99821 * 179.76726 * 20 19 18 22 22 C 1.38231 * 120.00156 * 0.50458 * 21 20 19 23 23 C 1.38234 * 120.00145 * 359.74928 * 22 21 20 24 24 C 1.38236 * 119.99808 * 89.99976 * 19 18 16 25 25 O 1.42899 * 109.47243 * 174.99737 * 16 14 13 26 26 C 1.42896 * 114.00201 * 269.99811 * 25 16 14 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.09005 * 109.47128 * 294.99575 * 18 16 14 35 35 H 1.08991 * 109.47056 * 54.99627 * 18 16 14 36 36 H 1.08004 * 119.99992 * 359.97438 * 20 19 18 37 37 H 1.08001 * 120.00118 * 180.22647 * 21 20 19 38 38 H 1.07995 * 120.00096 * 179.72232 * 22 21 20 39 39 H 1.08000 * 120.00635 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00304 * 0.02562 * 24 19 18 41 41 H 1.08998 * 109.47568 * 299.99944 * 26 25 16 42 42 H 1.09001 * 109.46820 * 60.00130 * 26 25 16 43 43 H 1.09000 * 109.47089 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.1531 2.6392 -3.4821 18 6 0.9293 4.5591 -2.8884 19 6 0.6139 5.1615 -4.2334 20 6 1.2993 4.7401 -5.3574 21 6 1.0066 5.2893 -6.5917 22 6 0.0359 6.2674 -6.7004 23 6 -0.6459 6.6926 -5.5756 24 6 -0.3569 6.1396 -4.3420 25 8 -1.3278 3.7554 -2.5713 26 6 -2.2636 2.7743 -3.0224 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 0.7471 5.2977 -2.1078 35 1 1.9754 4.2542 -2.8632 36 1 2.0611 3.9794 -5.2717 37 1 1.5396 4.9574 -7.4705 38 1 -0.1896 6.6996 -7.6641 39 1 -1.4041 7.4570 -5.6604 40 1 -0.8891 6.4724 -3.4631 41 1 -2.0636 2.5343 -4.0666 42 1 -2.1652 1.8731 -2.4172 43 1 -3.2760 3.1668 -2.9269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295026037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:27 Heat of formation + Delta-G solvation = -69.374892 kcal Electronic energy + Delta-G solvation = -23608.503750 eV Core-core repulsion = 20232.339468 eV Total energy + Delta-G solvation = -3376.164282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85607 -38.92091 -37.13540 -34.90542 -33.55449 -32.27539 -30.99738 -30.91627 -29.15830 -26.99548 -26.18181 -24.39619 -22.86752 -22.58854 -21.13282 -20.27470 -19.32008 -17.53885 -16.80611 -16.64900 -15.87377 -15.58584 -15.08137 -14.96119 -14.78666 -14.38565 -14.20059 -13.76247 -13.44942 -13.29415 -12.84349 -12.69721 -12.61075 -12.20280 -12.09335 -11.62474 -11.43713 -11.26690 -11.17720 -11.03527 -11.00068 -10.85361 -10.78776 -10.34766 -10.19310 -10.13605 -9.63799 -9.06662 -8.96736 -8.87318 -8.55736 -8.44585 -7.82523 -6.12901 -4.22595 1.29380 1.37275 3.24692 3.29340 3.30578 3.32841 3.70135 3.82236 4.15049 4.36919 4.76359 4.83725 4.94290 5.06227 5.15482 5.17858 5.21337 5.39606 5.42790 5.46338 5.55313 5.63382 5.68389 5.81817 5.89596 6.03622 6.09230 6.36734 6.41478 6.42821 6.46214 6.62598 6.63726 6.96549 7.01147 7.13702 7.22742 7.35524 7.44562 7.61096 7.72736 7.89596 8.17150 8.65576 8.77350 9.13018 9.44898 10.92353 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.004115 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.319112 B = 6802.210672 C = 7880.756514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.478 3.522 15 O -0.532 6.532 16 C 0.079 3.921 17 H 0.078 0.922 18 C -0.076 4.076 19 C -0.074 4.074 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.098 4.098 25 O -0.356 6.356 26 C 0.033 3.967 27 H 0.050 0.950 28 H 0.022 0.978 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.973 7.625 -16.154 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.262 3.738 15 O -0.409 6.409 16 C 0.017 3.983 17 H 0.096 0.904 18 C -0.113 4.113 19 C -0.074 4.074 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.116 4.116 25 O -0.273 6.273 26 C -0.063 4.063 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.580 7.674 -15.189 18.245 hybrid contribution 1.307 -0.393 -0.393 1.420 sum -5.274 7.281 -15.582 17.989 Atomic orbital electron populations 1.21836 0.98452 0.97962 1.01115 1.21937 0.92510 0.99917 1.02269 1.18774 0.94166 0.89095 0.81056 0.93323 1.21190 0.90691 1.39131 1.06312 0.92135 1.24882 0.98568 0.94800 0.95382 1.69884 1.35225 1.37520 1.09313 0.86523 0.84893 0.78325 0.77447 1.20170 1.21148 1.20179 1.46544 1.14549 1.56048 1.18536 1.20958 0.83204 0.79880 0.89793 1.90681 1.51308 1.59019 1.39897 1.22071 0.84094 0.96220 0.95868 0.90415 1.20688 0.99043 0.96808 0.94785 1.19793 0.96317 0.96534 0.94758 1.21115 0.99999 1.00243 0.92315 1.21094 0.98253 0.97368 0.97396 1.21110 0.97081 0.97982 0.98413 1.21146 0.99952 1.00223 0.92826 1.21120 0.96756 0.95989 0.97768 1.87927 1.13748 1.39495 1.86123 1.22767 0.93170 0.92982 0.97399 0.93118 0.95866 0.94564 0.88265 0.95081 0.92503 0.78136 0.89341 0.88775 0.85938 0.86294 0.86500 0.86320 0.85741 0.94529 0.93609 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.18 4.92 -54.93 -0.27 -14.45 16 14 C 0.48 9.36 5.70 -10.99 -0.06 9.29 16 15 O -0.53 -12.55 13.65 -14.30 -0.20 -12.75 16 16 C 0.08 1.20 2.50 -27.88 -0.07 1.13 16 17 H 0.08 1.04 7.79 -51.93 -0.40 0.63 16 18 C -0.08 -1.00 5.03 -27.88 -0.14 -1.14 16 19 C -0.07 -0.89 4.97 -104.62 -0.52 -1.41 16 20 C -0.12 -1.28 9.70 -39.59 -0.38 -1.67 16 21 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 22 C -0.13 -1.23 10.05 -39.59 -0.40 -1.62 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.10 -1.15 9.40 -39.58 -0.37 -1.52 16 25 O -0.36 -5.65 9.38 -55.09 -0.52 -6.16 16 26 C 0.03 0.44 10.81 101.05 1.09 1.54 16 27 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.78 5.65 -51.93 -0.29 0.48 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.39 6.63 8.24 -40.82 -0.34 6.29 16 34 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.09 1.14 7.71 -51.93 -0.40 0.74 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -30.68 354.42 -8.80 -39.47 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.73 Total: 7.63 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.03 Total: -10.53 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.36 Total: -38.34 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.71 Total: -18.91 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.68 -8.80 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.903 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds