Wall clock time and date at job start Tue Mar 31 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47286 * 54.99885 * 16 14 13 18 18 C 1.53002 * 109.47230 * 295.00012 * 16 14 13 19 19 C 1.50706 * 109.47143 * 174.99969 * 18 16 14 20 20 C 1.38232 * 119.99961 * 269.72677 * 19 18 16 21 21 C 1.38233 * 119.99821 * 179.76726 * 20 19 18 22 22 C 1.38231 * 120.00156 * 0.50458 * 21 20 19 23 23 C 1.38234 * 120.00145 * 359.74928 * 22 21 20 24 24 C 1.38236 * 119.99808 * 89.99976 * 19 18 16 25 25 O 1.42899 * 109.47243 * 174.99737 * 16 14 13 26 26 C 1.42896 * 114.00201 * 269.99811 * 25 16 14 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 34 34 H 1.09005 * 109.47128 * 294.99575 * 18 16 14 35 35 H 1.08991 * 109.47056 * 54.99627 * 18 16 14 36 36 H 1.08004 * 119.99992 * 359.97438 * 20 19 18 37 37 H 1.08001 * 120.00118 * 180.22647 * 21 20 19 38 38 H 1.07995 * 120.00096 * 179.72232 * 22 21 20 39 39 H 1.08000 * 120.00635 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00304 * 0.02562 * 24 19 18 41 41 H 1.08998 * 109.47568 * 299.99944 * 26 25 16 42 42 H 1.09001 * 109.46820 * 60.00130 * 26 25 16 43 43 H 1.09000 * 109.47089 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 1 0.1531 2.6392 -3.4821 18 6 0.9293 4.5591 -2.8884 19 6 0.6139 5.1615 -4.2334 20 6 1.2993 4.7401 -5.3574 21 6 1.0066 5.2893 -6.5917 22 6 0.0359 6.2674 -6.7004 23 6 -0.6459 6.6926 -5.5756 24 6 -0.3569 6.1396 -4.3420 25 8 -1.3278 3.7554 -2.5713 26 6 -2.2636 2.7743 -3.0224 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8293 -0.0605 2.9501 33 1 2.2718 2.1232 -1.9978 34 1 0.7471 5.2977 -2.1078 35 1 1.9754 4.2542 -2.8632 36 1 2.0611 3.9794 -5.2717 37 1 1.5396 4.9574 -7.4705 38 1 -0.1896 6.6996 -7.6641 39 1 -1.4041 7.4570 -5.6604 40 1 -0.8891 6.4724 -3.4631 41 1 -2.0636 2.5343 -4.0666 42 1 -2.1652 1.8731 -2.4172 43 1 -3.2760 3.1668 -2.9269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295026037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:27 Heat of formation + Delta-G solvation = -86.931782 kcal Electronic energy + Delta-G solvation = -23609.265074 eV Core-core repulsion = 20232.339468 eV Total energy + Delta-G solvation = -3376.925606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19410 -39.96303 -38.47048 -36.74949 -34.73735 -34.03663 -32.73928 -31.68296 -30.32547 -28.82109 -27.26717 -25.75033 -24.66499 -23.36025 -22.21202 -21.81429 -21.07372 -19.17192 -17.94591 -17.74628 -17.51295 -17.05873 -16.50203 -16.02422 -15.85917 -15.79546 -15.68360 -15.27173 -14.58879 -14.50536 -14.18287 -13.93257 -13.74673 -13.60305 -13.43553 -13.19947 -13.12243 -12.90440 -12.67885 -12.62050 -12.20125 -12.14316 -12.03736 -11.89380 -11.74933 -11.60615 -11.43100 -11.05492 -10.53814 -10.18439 -9.72528 -9.63647 -9.51719 -8.14621 -6.32146 0.49152 0.59545 1.46149 1.47840 1.55415 1.78914 2.31549 2.50444 2.87672 2.96883 3.14928 3.71951 3.94849 4.07039 4.07380 4.17950 4.26430 4.38694 4.45610 4.46530 4.49581 4.53226 4.57223 4.71463 4.74647 4.80215 4.86580 4.92872 5.05358 5.21024 5.24421 5.26379 5.42915 5.55835 5.63024 5.65448 5.70643 5.78210 5.80082 5.90938 6.08923 6.17588 6.20823 6.75873 6.99610 7.34947 7.58473 8.90494 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.004115 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.319112 B = 6802.210672 C = 7880.756514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.700 5.700 14 C 0.475 3.525 15 O -0.577 6.577 16 C 0.093 3.907 17 H 0.105 0.895 18 C -0.069 4.069 19 C -0.087 4.087 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.115 4.115 25 O -0.373 6.373 26 C 0.029 3.971 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 7.946 -19.309 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.261 3.739 15 O -0.457 6.457 16 C 0.031 3.969 17 H 0.122 0.878 18 C -0.107 4.107 19 C -0.087 4.087 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.133 4.133 25 O -0.290 6.290 26 C -0.067 4.067 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.673 8.008 -18.394 20.848 hybrid contribution 0.949 -0.447 0.561 1.190 sum -4.724 7.562 -17.832 19.937 Atomic orbital electron populations 1.21670 0.97188 0.99059 1.00035 1.21785 0.93543 0.99263 1.01389 1.18353 0.93675 0.89073 0.81393 0.98716 1.21560 0.91342 1.38899 1.06751 0.90766 1.25767 1.03245 0.94404 0.95038 1.70049 1.37140 1.38400 1.09855 0.85440 0.79187 0.78441 0.77527 1.19677 1.21425 1.18769 1.46286 1.15391 1.55831 1.17594 1.21858 0.82192 0.78887 0.90963 1.90661 1.52527 1.60520 1.42038 1.22032 0.84267 0.97150 0.93457 0.87768 1.20620 0.99075 0.95567 0.95434 1.19680 0.97385 0.97383 0.94300 1.21328 1.00106 1.00613 0.92257 1.21430 0.98172 0.96985 0.97802 1.21468 0.96370 0.97510 0.99219 1.21391 1.00411 1.00463 0.92452 1.21186 0.97182 0.96656 0.98311 1.87927 1.14256 1.40392 1.86414 1.22933 0.93586 0.91877 0.98318 0.95853 0.93528 0.93952 0.91037 0.93829 0.92668 0.76122 0.91105 0.87751 0.84534 0.83946 0.84021 0.84634 0.86703 0.92064 0.95457 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.14 2.24 44.24 0.10 14.24 16 4 H -0.01 -0.31 7.58 -2.38 -0.02 -0.33 16 5 C -0.55 -28.44 8.73 25.60 0.22 -28.22 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.83 5.29 84.66 0.45 1.27 16 8 N -0.92 -52.31 11.29 21.45 0.24 -52.07 16 9 Si 0.97 41.56 29.54 68.60 2.03 43.59 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 13 N -0.70 -28.11 4.92 -446.09 -2.20 -30.31 16 14 C 0.47 18.78 5.70 87.66 0.50 19.28 16 15 O -0.58 -28.28 13.65 15.96 0.22 -28.07 16 16 C 0.09 2.72 2.50 29.85 0.07 2.80 16 17 H 0.10 2.53 7.79 -2.39 -0.02 2.51 16 18 C -0.07 -1.78 5.03 29.85 0.15 -1.63 16 19 C -0.09 -1.97 4.97 -19.86 -0.10 -2.07 16 20 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 21 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 22 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 24 C -0.12 -2.58 9.40 22.27 0.21 -2.37 16 25 O -0.37 -11.63 9.38 -129.99 -1.22 -12.85 16 26 C 0.03 0.73 10.81 113.37 1.23 1.96 16 27 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.83 5.65 -2.38 -0.01 1.82 16 30 H 0.07 3.94 5.95 -2.39 -0.01 3.92 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 33 H 0.40 13.35 8.24 -92.71 -0.76 12.58 16 34 H 0.07 2.04 8.09 -2.38 -0.02 2.03 16 35 H 0.10 2.40 7.71 -2.39 -0.02 2.38 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.11 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 42 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.34 354.42 3.80 -64.54 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.23 Total: 28.50 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.50 Total: -13.35 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.95 Total: -82.37 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.00 Total: -40.91 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -68.34 3.80 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.387 kcal (2) G-P(sol) polarization free energy of solvation -68.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds