Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46892 * 2 1 4 4 H 1.08993 * 109.46970 * 304.99891 * 3 2 1 5 5 C 1.50703 * 109.46710 * 185.00157 * 3 2 1 6 6 H 1.08004 * 119.99527 * 240.00002 * 5 3 2 7 7 C 1.37872 * 120.00109 * 60.00208 * 5 3 2 8 8 N 1.31509 * 120.00234 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99866 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46986 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.46958 * 209.99648 * 9 7 5 12 12 H 1.48495 * 109.47030 * 329.99720 * 9 7 5 13 13 N 1.46494 * 109.46998 * 65.00068 * 3 2 1 14 14 C 1.34780 * 119.99948 * 274.99730 * 13 3 2 15 15 O 1.21274 * 120.00096 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00005 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47167 * 54.99532 * 16 14 13 18 18 C 1.53001 * 109.46686 * 294.99975 * 16 14 13 19 19 C 1.50706 * 109.46607 * 174.99874 * 18 16 14 20 20 C 1.38238 * 119.99744 * 90.00198 * 19 18 16 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00173 * 269.97579 * 19 18 16 25 25 O 1.42899 * 109.47018 * 174.99788 * 16 14 13 26 26 C 1.42893 * 113.99888 * 269.99816 * 25 16 14 27 27 H 1.08994 * 109.47212 * 300.00007 * 1 2 3 28 28 H 1.09004 * 109.47109 * 60.00240 * 1 2 3 29 29 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47124 * 240.00017 * 2 1 3 31 31 H 1.08996 * 109.46812 * 120.00310 * 2 1 3 32 32 H 0.97004 * 120.00508 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99986 * 95.00368 * 13 3 2 34 34 H 1.08997 * 109.47212 * 55.00577 * 18 16 14 35 35 H 1.08995 * 109.47163 * 294.99987 * 18 16 14 36 36 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 40 40 H 1.07999 * 120.00025 * 0.02562 * 24 19 18 41 41 H 1.08998 * 109.47601 * 60.00377 * 26 25 16 42 42 H 1.09003 * 109.46699 * 180.02562 * 26 25 16 43 43 H 1.08997 * 109.47239 * 299.99815 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5538 -0.3520 -0.7598 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6327 0.4341 16 6 0.0365 3.3386 2.6544 17 1 0.7774 4.0952 2.9128 18 6 -0.0404 2.2973 3.7728 19 6 -0.3181 2.9874 5.0834 20 6 -1.6221 3.1883 5.4960 21 6 -1.8768 3.8209 6.6984 22 6 -0.8277 4.2520 7.4885 23 6 0.4762 4.0555 7.0736 24 6 0.7311 3.4190 5.8733 25 8 -1.2407 3.9585 2.4920 26 6 -1.1766 5.3095 2.0311 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0618 -2.9496 33 1 2.2719 2.1232 1.9977 34 1 0.9074 1.7628 3.8373 35 1 -0.8419 1.5909 3.5570 36 1 -2.4417 2.8511 4.8789 37 1 -2.8956 3.9782 7.0206 38 1 -1.0268 4.7466 8.4278 39 1 1.2959 4.3963 7.6888 40 1 1.7498 3.2620 5.5509 41 1 -0.6790 5.3396 1.0618 42 1 -2.1864 5.7085 1.9341 43 1 -0.6158 5.9112 2.7463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295026040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = -69.374113 kcal Electronic energy + Delta-G solvation = -23629.844814 eV Core-core repulsion = 20253.680566 eV Total energy + Delta-G solvation = -3376.164248 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86274 -38.92132 -37.13895 -34.90177 -33.54740 -32.27659 -30.98256 -30.91964 -29.19873 -26.94530 -26.17968 -24.39798 -22.87475 -22.59633 -21.15185 -20.24497 -19.31199 -17.52074 -16.83445 -16.67293 -15.85825 -15.52049 -15.15040 -14.94505 -14.83661 -14.41218 -14.11187 -13.82195 -13.45410 -13.19005 -12.90480 -12.68085 -12.58207 -12.30923 -12.00778 -11.64678 -11.44106 -11.25403 -11.16151 -11.05414 -10.99940 -10.84703 -10.78500 -10.35396 -10.20734 -10.07659 -9.61806 -9.04992 -8.97484 -8.88324 -8.55403 -8.45369 -7.82021 -6.13234 -4.23014 1.28518 1.36532 3.22866 3.29955 3.31119 3.31946 3.69549 3.81885 4.15010 4.36517 4.75219 4.82867 4.93673 5.05771 5.15285 5.17720 5.20801 5.38353 5.43235 5.46212 5.55224 5.63583 5.67898 5.83392 5.88490 6.02717 6.07060 6.40721 6.40755 6.45509 6.47835 6.61523 6.67794 6.95751 7.05158 7.14242 7.25103 7.37812 7.45464 7.61703 7.73407 7.90063 8.17960 8.65625 8.77170 9.13021 9.44595 10.91916 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.003917 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.338799 B = 7146.398821 C = 7726.080795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.478 3.522 15 O -0.532 6.532 16 C 0.079 3.921 17 H 0.079 0.921 18 C -0.075 4.075 19 C -0.074 4.074 20 C -0.098 4.098 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.119 4.119 25 O -0.356 6.356 26 C 0.033 3.967 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.022 0.978 30 H 0.098 0.902 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.333 6.871 16.498 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.357 5.357 14 C 0.262 3.738 15 O -0.409 6.409 16 C 0.017 3.983 17 H 0.097 0.903 18 C -0.113 4.113 19 C -0.074 4.074 20 C -0.116 4.116 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.137 4.137 25 O -0.273 6.273 26 C -0.063 4.063 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.055 6.658 15.640 18.404 hybrid contribution 1.560 0.185 0.149 1.578 sum -5.495 6.843 15.789 18.065 Atomic orbital electron populations 1.21841 0.98308 0.98031 1.01292 1.21930 0.92619 0.99778 1.02252 1.18776 0.94129 0.89197 0.81007 0.93422 1.21230 0.90725 1.39076 1.06275 0.92127 1.24883 0.98554 0.94826 0.95385 1.69893 1.35114 1.37515 1.09364 0.86469 0.84941 0.78432 0.77387 1.20534 1.21089 1.19890 1.46546 1.14533 1.56093 1.18511 1.20959 0.83011 0.80257 0.89611 1.90679 1.51197 1.58891 1.40138 1.22074 0.87403 0.95705 0.93123 0.90329 1.20678 1.04296 0.96558 0.89717 1.19786 0.93465 0.98636 0.95547 1.21114 0.96494 0.98210 0.95810 1.21144 0.98954 0.99060 0.94986 1.21114 0.92979 1.00679 0.99794 1.21097 0.96740 0.99586 0.96672 1.21118 0.98884 0.98858 0.94804 1.87920 1.26244 1.26552 1.86614 1.22768 1.02542 0.82626 0.98383 0.94182 0.93244 0.95873 0.88342 0.95031 0.92558 0.78132 0.88881 0.89414 0.85754 0.86317 0.86490 0.86281 0.85929 0.93549 0.89727 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.54 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.88 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.71 -14.18 4.92 -54.93 -0.27 -14.45 16 14 C 0.48 9.35 5.70 -10.98 -0.06 9.29 16 15 O -0.53 -12.55 13.65 -14.30 -0.20 -12.74 16 16 C 0.08 1.19 2.50 -27.88 -0.07 1.12 16 17 H 0.08 1.06 7.79 -51.93 -0.40 0.65 16 18 C -0.07 -0.97 5.03 -27.88 -0.14 -1.11 16 19 C -0.07 -0.88 4.97 -104.62 -0.52 -1.40 16 20 C -0.10 -1.14 9.40 -39.58 -0.37 -1.51 16 21 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 25 O -0.36 -5.65 9.38 -55.09 -0.52 -6.17 16 26 C 0.03 0.45 10.81 101.05 1.09 1.54 16 27 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 28 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 6.63 8.24 -40.82 -0.34 6.30 16 34 H 0.09 1.10 7.71 -51.93 -0.40 0.70 16 35 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -30.72 354.42 -8.80 -39.52 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.73 Total: 7.57 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.03 Total: -10.52 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.36 Total: -38.33 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.71 Total: -18.91 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.72 -8.80 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.858 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds