Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46892 * 2 1 4 4 H 1.08993 * 109.46970 * 304.99891 * 3 2 1 5 5 C 1.50703 * 109.46710 * 185.00157 * 3 2 1 6 6 H 1.08004 * 119.99527 * 240.00002 * 5 3 2 7 7 C 1.37872 * 120.00109 * 60.00208 * 5 3 2 8 8 N 1.31509 * 120.00234 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99866 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46986 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.46958 * 209.99648 * 9 7 5 12 12 H 1.48495 * 109.47030 * 329.99720 * 9 7 5 13 13 N 1.46494 * 109.46998 * 65.00068 * 3 2 1 14 14 C 1.34780 * 119.99948 * 274.99730 * 13 3 2 15 15 O 1.21274 * 120.00096 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00005 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47167 * 54.99532 * 16 14 13 18 18 C 1.53001 * 109.46686 * 294.99975 * 16 14 13 19 19 C 1.50706 * 109.46607 * 174.99874 * 18 16 14 20 20 C 1.38238 * 119.99744 * 90.00198 * 19 18 16 21 21 C 1.38234 * 119.99693 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38234 * 120.00173 * 269.97579 * 19 18 16 25 25 O 1.42899 * 109.47018 * 174.99788 * 16 14 13 26 26 C 1.42893 * 113.99888 * 269.99816 * 25 16 14 27 27 H 1.08994 * 109.47212 * 300.00007 * 1 2 3 28 28 H 1.09004 * 109.47109 * 60.00240 * 1 2 3 29 29 H 1.09002 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47124 * 240.00017 * 2 1 3 31 31 H 1.08996 * 109.46812 * 120.00310 * 2 1 3 32 32 H 0.97004 * 120.00508 * 180.02562 * 8 7 5 33 33 H 0.97001 * 119.99986 * 95.00368 * 13 3 2 34 34 H 1.08997 * 109.47212 * 55.00577 * 18 16 14 35 35 H 1.08995 * 109.47163 * 294.99987 * 18 16 14 36 36 H 1.07997 * 119.99846 * 359.97438 * 20 19 18 37 37 H 1.07999 * 119.99751 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 39 39 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 40 40 H 1.07999 * 120.00025 * 0.02562 * 24 19 18 41 41 H 1.08998 * 109.47601 * 60.00377 * 26 25 16 42 42 H 1.09003 * 109.46699 * 180.02562 * 26 25 16 43 43 H 1.08997 * 109.47239 * 299.99815 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8800 -1.3811 10 1 6.5538 -0.3520 -0.7598 11 1 6.3835 0.9214 -2.8165 12 1 6.5576 2.0719 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6327 0.4341 16 6 0.0365 3.3386 2.6544 17 1 0.7774 4.0952 2.9128 18 6 -0.0404 2.2973 3.7728 19 6 -0.3181 2.9874 5.0834 20 6 -1.6221 3.1883 5.4960 21 6 -1.8768 3.8209 6.6984 22 6 -0.8277 4.2520 7.4885 23 6 0.4762 4.0555 7.0736 24 6 0.7311 3.4190 5.8733 25 8 -1.2407 3.9585 2.4920 26 6 -1.1766 5.3095 2.0311 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8292 -0.0618 -2.9496 33 1 2.2719 2.1232 1.9977 34 1 0.9074 1.7628 3.8373 35 1 -0.8419 1.5909 3.5570 36 1 -2.4417 2.8511 4.8789 37 1 -2.8956 3.9782 7.0206 38 1 -1.0268 4.7466 8.4278 39 1 1.2959 4.3963 7.6888 40 1 1.7498 3.2620 5.5509 41 1 -0.6790 5.3396 1.0618 42 1 -2.1864 5.7085 1.9341 43 1 -0.6158 5.9112 2.7463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295026040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -86.941121 kcal Electronic energy + Delta-G solvation = -23630.606577 eV Core-core repulsion = 20253.680566 eV Total energy + Delta-G solvation = -3376.926011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19630 -39.95650 -38.47759 -36.74752 -34.72685 -34.01909 -32.75084 -31.67977 -30.35714 -28.78011 -27.27303 -25.72654 -24.69641 -23.35795 -22.20708 -21.80154 -21.06600 -19.15340 -18.02200 -17.75706 -17.47260 -16.94905 -16.58784 -16.14516 -15.80699 -15.73529 -15.64522 -15.30326 -14.58799 -14.43212 -14.17954 -14.03854 -13.67142 -13.62868 -13.41025 -13.20899 -13.11822 -12.90753 -12.67964 -12.64256 -12.18631 -12.09162 -12.05211 -11.91763 -11.75061 -11.58331 -11.42750 -11.03956 -10.54744 -10.19238 -9.72280 -9.62481 -9.51986 -8.14952 -6.32630 0.49386 0.59857 1.45671 1.46190 1.56439 1.79216 2.30671 2.50531 2.87443 2.97059 3.14535 3.72043 3.95483 4.07124 4.08044 4.18111 4.26538 4.38844 4.45301 4.48556 4.49853 4.55235 4.57637 4.71717 4.76951 4.79385 4.86912 4.92942 5.06850 5.21632 5.25943 5.26721 5.44364 5.56572 5.62970 5.65725 5.70977 5.78781 5.80555 5.90156 6.08477 6.17981 6.21107 6.75675 6.99573 7.34627 7.58429 8.90237 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.003917 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.338799 B = 7146.398821 C = 7726.080795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.700 5.700 14 C 0.475 3.525 15 O -0.577 6.577 16 C 0.091 3.909 17 H 0.102 0.898 18 C -0.068 4.068 19 C -0.088 4.088 20 C -0.115 4.115 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.126 4.126 25 O -0.372 6.372 26 C 0.029 3.971 27 H 0.044 0.956 28 H 0.021 0.979 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.024 0.976 42 H 0.102 0.898 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 7.715 19.379 21.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.261 3.739 15 O -0.457 6.457 16 C 0.030 3.970 17 H 0.120 0.880 18 C -0.105 4.105 19 C -0.088 4.088 20 C -0.133 4.133 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.143 4.143 25 O -0.289 6.289 26 C -0.067 4.067 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.043 0.957 42 H 0.120 0.880 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.925 7.517 18.570 20.891 hybrid contribution 1.139 -0.022 -0.724 1.350 sum -4.786 7.495 17.846 19.939 Atomic orbital electron populations 1.21677 0.97197 0.99041 1.00136 1.21780 0.93498 0.99230 1.01387 1.18352 0.93641 0.89117 0.81369 0.98729 1.21584 0.91345 1.38878 1.06693 0.90824 1.25770 1.03251 0.94422 0.95040 1.70054 1.37065 1.38368 1.09919 0.85381 0.79194 0.78918 0.77061 1.19664 1.21489 1.18779 1.46287 1.15353 1.55911 1.17562 1.21856 0.81990 0.79316 0.90727 1.90660 1.52378 1.60470 1.42230 1.22047 0.87782 0.96358 0.90830 0.88025 1.20616 1.04456 0.95762 0.89692 1.19688 0.94067 0.99757 0.95263 1.21187 0.96325 0.99100 0.96650 1.21392 1.00271 0.98597 0.94477 1.21468 0.92726 0.99927 1.00471 1.21428 0.97663 0.98892 0.96466 1.21331 0.99192 0.98732 0.95086 1.87919 1.26719 1.27816 1.86427 1.22923 1.03923 0.81992 0.97842 0.93737 0.95939 0.93641 0.91098 0.93762 0.92667 0.76120 0.87655 0.90810 0.86603 0.84634 0.84069 0.84023 0.84580 0.95695 0.87982 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.52 71.98 0.61 -5.04 16 2 C -0.12 -5.90 5.45 30.60 0.17 -5.74 16 3 C 0.28 14.15 2.24 44.25 0.10 14.25 16 4 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 5 C -0.55 -28.40 8.73 25.60 0.22 -28.18 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -52.24 11.29 21.44 0.24 -51.99 16 9 Si 0.97 41.51 29.54 68.60 2.03 43.53 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 13 N -0.70 -28.09 4.92 -446.11 -2.20 -30.29 16 14 C 0.48 18.76 5.70 87.66 0.50 19.26 16 15 O -0.58 -28.26 13.65 15.98 0.22 -28.04 16 16 C 0.09 2.68 2.50 29.85 0.07 2.76 16 17 H 0.10 2.53 7.79 -2.39 -0.02 2.51 16 18 C -0.07 -1.68 5.03 29.85 0.15 -1.53 16 19 C -0.09 -1.94 4.97 -19.86 -0.10 -2.04 16 20 C -0.11 -2.51 9.40 22.27 0.21 -2.30 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 22 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 23 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.35 9.70 22.27 0.22 -2.14 16 25 O -0.37 -11.59 9.38 -129.99 -1.22 -12.81 16 26 C 0.03 0.76 10.81 113.37 1.23 1.98 16 27 H 0.04 1.97 5.65 -2.39 -0.01 1.96 16 28 H 0.02 1.11 7.85 -2.38 -0.02 1.09 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 3.92 5.95 -2.38 -0.01 3.90 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.26 14.32 8.31 -92.71 -0.77 13.54 16 33 H 0.40 13.34 8.24 -92.71 -0.76 12.58 16 34 H 0.11 2.29 7.71 -2.39 -0.02 2.28 16 35 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 36 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 Total: -1.00 -68.24 354.42 3.80 -64.44 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.23 Total: 28.36 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 4.50 Total: -13.19 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.95 Total: -82.28 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.00 Total: -40.85 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -68.24 3.80 -64.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.503 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds