Wall clock time and date at job start Tue Mar 31 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47120 * 2 1 4 4 H 1.08991 * 109.46949 * 55.00351 * 3 2 1 5 5 C 1.50703 * 109.47207 * 175.00136 * 3 2 1 6 6 H 1.08000 * 120.00120 * 119.99505 * 5 3 2 7 7 C 1.37879 * 119.99695 * 300.00230 * 5 3 2 8 8 N 1.31514 * 119.99535 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00238 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46741 * 90.00110 * 9 7 5 11 11 H 1.48493 * 109.46812 * 210.00327 * 9 7 5 12 12 H 1.48500 * 109.46971 * 330.00584 * 9 7 5 13 13 N 1.46497 * 109.46992 * 294.99781 * 3 2 1 14 14 C 1.34778 * 119.99736 * 85.00406 * 13 3 2 15 15 O 1.21279 * 119.99960 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99965 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47060 * 304.99767 * 16 14 13 18 18 C 1.53002 * 109.47419 * 64.99848 * 16 14 13 19 19 C 1.50696 * 109.47344 * 184.99983 * 18 16 14 20 20 C 1.38232 * 120.00052 * 269.72741 * 19 18 16 21 21 C 1.38236 * 120.00045 * 179.76620 * 20 19 18 22 22 C 1.38234 * 119.99751 * 0.50434 * 21 20 19 23 23 C 1.38237 * 120.00208 * 359.74662 * 22 21 20 24 24 C 1.38234 * 119.99881 * 89.99796 * 19 18 16 25 25 O 1.42903 * 109.46878 * 184.99637 * 16 14 13 26 26 C 1.42909 * 113.99516 * 150.00028 * 25 16 14 27 27 H 1.09002 * 109.46990 * 299.99966 * 1 2 3 28 28 H 1.09002 * 109.47213 * 60.00063 * 1 2 3 29 29 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47350 * 240.00437 * 2 1 3 31 31 H 1.09002 * 109.47213 * 119.99937 * 2 1 3 32 32 H 0.97009 * 119.99778 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00780 * 264.99948 * 13 3 2 34 34 H 1.09008 * 109.46873 * 305.00091 * 18 16 14 35 35 H 1.08997 * 109.47047 * 64.99780 * 18 16 14 36 36 H 1.08004 * 120.00107 * 359.97438 * 20 19 18 37 37 H 1.07994 * 120.00424 * 180.22752 * 21 20 19 38 38 H 1.08002 * 120.00232 * 179.72511 * 22 21 20 39 39 H 1.07996 * 120.00052 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99860 * 0.02562 * 24 19 18 41 41 H 1.08996 * 109.46835 * 299.99639 * 26 25 16 42 42 H 1.08994 * 109.47272 * 60.00221 * 26 25 16 43 43 H 1.09002 * 109.46835 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 5.4539 0.8796 1.3357 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2360 3.8754 12 1 1.7880 0.8093 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6320 -0.4344 16 6 0.0366 3.3387 -2.6544 17 1 0.7775 4.0953 -2.9128 18 6 -0.0403 2.2975 -3.7729 19 6 -0.3181 2.9876 -5.0835 20 6 -1.6219 3.1835 -5.4987 21 6 -1.8768 3.8209 -6.6986 22 6 -0.8276 4.2530 -7.4882 23 6 0.4764 4.0524 -7.0754 24 6 0.7311 3.4197 -5.8730 25 8 -1.2407 3.9585 -2.4920 26 6 -1.4282 5.1233 -3.2985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8771 0.4817 2.1127 33 1 2.2719 2.1232 -1.9978 34 1 0.9074 1.7629 -3.8374 35 1 -0.8419 1.5911 -3.5572 36 1 -2.4416 2.8417 -4.8841 37 1 -2.8954 3.9773 -7.0213 38 1 -1.0266 4.7470 -8.4277 39 1 1.2960 4.3896 -7.6924 40 1 1.7499 3.2623 -5.5508 41 1 -0.6745 5.8678 -3.0422 42 1 -1.3319 4.8560 -4.3507 43 1 -2.4215 5.5342 -3.1178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295026043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:33 Heat of formation + Delta-G solvation = -54.359482 kcal Electronic energy + Delta-G solvation = -23806.141571 eV Core-core repulsion = 20430.628407 eV Total energy + Delta-G solvation = -3375.513165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19642 -39.07156 -37.34704 -35.19052 -33.45786 -32.31098 -31.54333 -31.11660 -29.51944 -27.42110 -26.29292 -24.44347 -22.75604 -22.61557 -21.33025 -20.66822 -19.57143 -17.60777 -16.95290 -16.76856 -16.15119 -15.77104 -15.43594 -15.06295 -15.01128 -14.65613 -14.24460 -13.75118 -13.59217 -13.26985 -13.19458 -12.87437 -12.71449 -12.61507 -12.25954 -12.02596 -11.79912 -11.64588 -11.28045 -11.23048 -11.07303 -10.93422 -10.85141 -10.61221 -9.99260 -9.91715 -9.54438 -9.23599 -9.13147 -9.02750 -8.75831 -8.53286 -8.07133 -6.21826 -4.24370 1.13916 1.21158 3.17013 3.23986 3.35721 3.38429 3.42269 3.61379 4.27067 4.31618 4.62016 4.71672 4.82434 4.94352 4.99545 5.09764 5.12815 5.24922 5.29691 5.38065 5.41274 5.48338 5.54636 5.70572 5.76535 5.88163 5.95332 6.00261 6.04072 6.19413 6.28398 6.32996 6.46038 6.66520 6.71029 6.81475 6.84830 6.96697 7.10192 7.29376 7.30821 7.51008 8.14955 8.50838 8.75234 8.93897 9.39183 10.90118 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.003931 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.592705 B = 7121.193602 C = 7556.948905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.504 3.496 15 O -0.527 6.527 16 C 0.079 3.921 17 H 0.083 0.917 18 C -0.101 4.101 19 C -0.080 4.080 20 C -0.105 4.105 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.117 4.117 25 O -0.354 6.354 26 C 0.013 3.987 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.267 0.733 33 H 0.394 0.606 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.634 5.638 -16.808 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.141 3.859 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.349 5.349 14 C 0.288 3.712 15 O -0.403 6.403 16 C 0.017 3.983 17 H 0.100 0.900 18 C -0.139 4.139 19 C -0.081 4.081 20 C -0.123 4.123 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.135 4.135 25 O -0.271 6.271 26 C -0.083 4.083 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.227 0.773 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.170 5.494 -15.864 20.735 hybrid contribution 0.147 -0.308 0.115 0.360 sum -12.024 5.186 -15.748 20.481 Atomic orbital electron populations 1.21884 0.96889 0.99060 1.02367 1.22287 0.94381 0.99905 1.01118 1.19158 0.95603 0.88490 0.82699 0.93287 1.21040 0.88559 1.39839 1.07870 0.90187 1.24827 0.94860 0.95121 0.97659 1.69869 1.08685 1.44505 1.29826 0.86910 0.81013 0.79979 0.80899 1.20208 1.22173 1.18413 1.46116 1.14502 1.56195 1.18078 1.20102 0.82832 0.79719 0.88570 1.90687 1.51242 1.58395 1.39996 1.21975 0.87578 0.95446 0.93304 0.89957 1.21138 1.04443 0.97655 0.90698 1.19849 0.93463 0.98759 0.95981 1.21109 0.96490 0.98533 0.96184 1.21152 0.99134 0.99128 0.94883 1.21149 0.92911 1.00445 0.99800 1.21146 0.96835 0.99271 0.96565 1.21155 0.99033 0.98638 0.94658 1.88028 1.32087 1.42005 1.64982 1.23217 1.01768 0.87363 0.95983 0.92873 0.92863 0.94955 0.92258 0.92777 0.92281 0.77305 0.89080 0.89372 0.85667 0.86120 0.86293 0.86061 0.85681 0.94377 0.92329 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.15 0.32 -2.62 16 2 C -0.14 -3.04 5.11 -26.73 -0.14 -3.18 16 3 C 0.24 5.70 1.83 -69.08 -0.13 5.58 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 5 C -0.54 -14.23 9.31 -34.44 -0.32 -14.55 16 6 H 0.08 2.22 7.98 -52.49 -0.42 1.80 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 9 Si 0.88 21.69 24.41 -169.99 -4.15 17.54 16 10 H -0.28 -6.55 6.83 56.52 0.39 -6.17 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 13 N -0.70 -13.44 4.92 -54.93 -0.27 -13.71 16 14 C 0.50 9.51 5.75 -10.98 -0.06 9.44 16 15 O -0.53 -12.01 13.64 -14.30 -0.20 -12.21 16 16 C 0.08 1.14 2.73 -27.88 -0.08 1.07 16 17 H 0.08 1.07 7.79 -51.93 -0.40 0.66 16 18 C -0.10 -1.22 5.03 -27.88 -0.14 -1.36 16 19 C -0.08 -0.86 3.87 -104.63 -0.41 -1.27 16 20 C -0.11 -1.06 6.83 -39.58 -0.27 -1.33 16 21 C -0.12 -1.09 9.94 -39.58 -0.39 -1.48 16 22 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 25 O -0.35 -5.47 9.75 -55.09 -0.54 -6.01 16 26 C 0.01 0.15 10.24 101.05 1.03 1.19 16 27 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 28 H 0.05 1.05 5.64 -51.93 -0.29 0.76 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.39 6.53 8.24 -40.82 -0.34 6.19 16 34 H 0.09 1.01 7.71 -51.92 -0.40 0.61 16 35 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.06 0.62 3.85 -51.93 -0.20 0.42 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -32.02 339.66 -7.50 -39.52 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.38 Total: 6.01 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.86 Total: -10.83 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.50 Total: -39.14 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.73 Total: -18.21 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.15 Total: 17.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.02 -7.50 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.844 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds