Wall clock time and date at job start Tue Mar 31 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47120 * 2 1 4 4 H 1.08991 * 109.46949 * 55.00351 * 3 2 1 5 5 C 1.50703 * 109.47207 * 175.00136 * 3 2 1 6 6 H 1.08000 * 120.00120 * 119.99505 * 5 3 2 7 7 C 1.37879 * 119.99695 * 300.00230 * 5 3 2 8 8 N 1.31514 * 119.99535 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00238 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.46741 * 90.00110 * 9 7 5 11 11 H 1.48493 * 109.46812 * 210.00327 * 9 7 5 12 12 H 1.48500 * 109.46971 * 330.00584 * 9 7 5 13 13 N 1.46497 * 109.46992 * 294.99781 * 3 2 1 14 14 C 1.34778 * 119.99736 * 85.00406 * 13 3 2 15 15 O 1.21279 * 119.99960 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99965 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47060 * 304.99767 * 16 14 13 18 18 C 1.53002 * 109.47419 * 64.99848 * 16 14 13 19 19 C 1.50696 * 109.47344 * 184.99983 * 18 16 14 20 20 C 1.38232 * 120.00052 * 269.72741 * 19 18 16 21 21 C 1.38236 * 120.00045 * 179.76620 * 20 19 18 22 22 C 1.38234 * 119.99751 * 0.50434 * 21 20 19 23 23 C 1.38237 * 120.00208 * 359.74662 * 22 21 20 24 24 C 1.38234 * 119.99881 * 89.99796 * 19 18 16 25 25 O 1.42903 * 109.46878 * 184.99637 * 16 14 13 26 26 C 1.42909 * 113.99516 * 150.00028 * 25 16 14 27 27 H 1.09002 * 109.46990 * 299.99966 * 1 2 3 28 28 H 1.09002 * 109.47213 * 60.00063 * 1 2 3 29 29 H 1.08995 * 109.47380 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47350 * 240.00437 * 2 1 3 31 31 H 1.09002 * 109.47213 * 119.99937 * 2 1 3 32 32 H 0.97009 * 119.99778 * 179.97438 * 8 7 5 33 33 H 0.97002 * 120.00780 * 264.99948 * 13 3 2 34 34 H 1.09008 * 109.46873 * 305.00091 * 18 16 14 35 35 H 1.08997 * 109.47047 * 64.99780 * 18 16 14 36 36 H 1.08004 * 120.00107 * 359.97438 * 20 19 18 37 37 H 1.07994 * 120.00424 * 180.22752 * 21 20 19 38 38 H 1.08002 * 120.00232 * 179.72511 * 22 21 20 39 39 H 1.07996 * 120.00052 * 179.97438 * 23 22 21 40 40 H 1.08005 * 119.99860 * 0.02562 * 24 19 18 41 41 H 1.08996 * 109.46835 * 299.99639 * 26 25 16 42 42 H 1.08994 * 109.47272 * 60.00221 * 26 25 16 43 43 H 1.09002 * 109.46835 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 5.4539 0.8796 1.3357 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3261 2.2645 11 1 3.7941 0.2360 3.8754 12 1 1.7880 0.8093 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6320 -0.4344 16 6 0.0366 3.3387 -2.6544 17 1 0.7775 4.0953 -2.9128 18 6 -0.0403 2.2975 -3.7729 19 6 -0.3181 2.9876 -5.0835 20 6 -1.6219 3.1835 -5.4987 21 6 -1.8768 3.8209 -6.6986 22 6 -0.8276 4.2530 -7.4882 23 6 0.4764 4.0524 -7.0754 24 6 0.7311 3.4197 -5.8730 25 8 -1.2407 3.9585 -2.4920 26 6 -1.4282 5.1233 -3.2985 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.8771 0.4817 2.1127 33 1 2.2719 2.1232 -1.9978 34 1 0.9074 1.7629 -3.8374 35 1 -0.8419 1.5911 -3.5572 36 1 -2.4416 2.8417 -4.8841 37 1 -2.8954 3.9773 -7.0213 38 1 -1.0266 4.7470 -8.4277 39 1 1.2960 4.3896 -7.6924 40 1 1.7499 3.2623 -5.5508 41 1 -0.6745 5.8678 -3.0422 42 1 -1.3319 4.8560 -4.3507 43 1 -2.4215 5.5342 -3.1178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295026043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:32 Heat of formation + Delta-G solvation = -74.688107 kcal Electronic energy + Delta-G solvation = -23807.023087 eV Core-core repulsion = 20430.628407 eV Total energy + Delta-G solvation = -3376.394680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35635 -40.19980 -38.50340 -36.95452 -34.63943 -34.13716 -33.10125 -31.79909 -30.60638 -29.22977 -27.21346 -25.64848 -24.44188 -23.43236 -22.49553 -21.93400 -21.20580 -19.29131 -18.03564 -17.97861 -17.60527 -17.07029 -16.80062 -16.21863 -15.91032 -15.82022 -15.76284 -15.28530 -14.99187 -14.32157 -14.24434 -14.18567 -13.80118 -13.74393 -13.64679 -13.60986 -13.35189 -13.01911 -12.79784 -12.71541 -12.38243 -12.10245 -11.97038 -11.85802 -11.75818 -11.38135 -11.23714 -11.02046 -10.85752 -10.52482 -9.78954 -9.74771 -9.38888 -8.37812 -6.42898 0.42864 0.53286 1.26953 1.35642 1.45334 1.70589 2.06980 2.26348 2.89299 2.98088 3.09838 3.61886 3.91032 3.97633 4.09039 4.09663 4.21912 4.24690 4.32739 4.35018 4.44728 4.47444 4.51120 4.59281 4.67567 4.79190 4.84449 4.86908 4.91069 5.00865 5.12237 5.16994 5.21597 5.23202 5.40659 5.52053 5.61734 5.64247 5.67408 5.73148 6.04200 6.14695 6.19588 6.58836 6.86692 7.20160 7.44460 8.77104 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025810 B = 0.003931 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.592705 B = 7121.193602 C = 7556.948905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.263 1.263 13 N -0.694 5.694 14 C 0.503 3.497 15 O -0.569 6.569 16 C 0.090 3.910 17 H 0.100 0.900 18 C -0.092 4.092 19 C -0.093 4.093 20 C -0.116 4.116 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.126 4.126 25 O -0.381 6.381 26 C 0.010 3.990 27 H 0.033 0.967 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.270 0.730 33 H 0.407 0.593 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.793 5.743 -18.836 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.037 0.963 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.761 3.239 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.188 1.188 13 N -0.345 5.345 14 C 0.289 3.711 15 O -0.448 6.448 16 C 0.028 3.972 17 H 0.118 0.882 18 C -0.130 4.130 19 C -0.093 4.093 20 C -0.134 4.134 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.144 4.144 25 O -0.299 6.299 26 C -0.085 4.085 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.330 5.604 -17.934 23.037 hybrid contribution 0.497 -0.235 0.646 0.848 sum -12.832 5.369 -17.288 22.190 Atomic orbital electron populations 1.21768 0.95413 1.00538 1.01491 1.22203 0.95618 0.98433 1.01222 1.18795 0.93306 0.89662 0.83680 0.96265 1.21269 0.90160 1.38518 1.07016 0.92191 1.25498 0.95664 0.95892 0.99733 1.69969 1.10157 1.46143 1.30823 0.86088 0.79274 0.80060 0.78521 1.18426 1.22127 1.18799 1.45915 1.15302 1.56115 1.17178 1.20873 0.81811 0.78787 0.89665 1.90665 1.52301 1.59904 1.41897 1.21868 0.87925 0.96174 0.91187 0.88223 1.21024 1.04548 0.96816 0.90640 1.19727 0.94140 0.99895 0.95577 1.21168 0.96149 0.99146 0.96920 1.21405 1.00402 0.98438 0.94263 1.21488 0.92586 0.99692 1.00476 1.21436 0.97806 0.98733 0.96321 1.21324 0.99193 0.98768 0.95083 1.87986 1.32278 1.43407 1.66216 1.23391 1.02671 0.86213 0.96231 0.94801 0.92737 0.92199 0.90875 0.93837 0.92089 0.75700 0.88223 0.90391 0.86154 0.84238 0.83977 0.84192 0.84938 0.93982 0.91088 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 8.51 71.98 0.61 -4.69 16 2 C -0.14 -5.85 5.11 30.59 0.16 -5.70 16 3 C 0.25 11.74 1.83 44.25 0.08 11.82 16 4 H 0.02 1.04 6.63 -2.39 -0.02 1.02 16 5 C -0.53 -28.57 9.31 25.60 0.24 -28.33 16 6 H 0.06 3.39 7.98 -2.91 -0.02 3.37 16 7 C 0.03 1.80 5.45 84.66 0.46 2.26 16 8 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 9 Si 0.93 44.87 24.41 68.60 1.67 46.55 16 10 H -0.26 -11.67 6.83 99.48 0.68 -10.99 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.26 -12.72 6.53 99.48 0.65 -12.07 16 13 N -0.69 -26.52 4.92 -446.10 -2.20 -28.71 16 14 C 0.50 18.84 5.75 87.66 0.50 19.35 16 15 O -0.57 -26.18 13.64 15.96 0.22 -25.96 16 16 C 0.09 2.52 2.73 29.85 0.08 2.61 16 17 H 0.10 2.43 7.79 -2.39 -0.02 2.42 16 18 C -0.09 -2.12 5.03 29.85 0.15 -1.97 16 19 C -0.09 -1.84 3.87 -19.87 -0.08 -1.92 16 20 C -0.12 -2.13 6.83 22.27 0.15 -1.98 16 21 C -0.13 -1.88 9.94 22.27 0.22 -1.66 16 22 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 23 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.13 -2.18 9.70 22.27 0.22 -1.97 16 25 O -0.38 -11.47 9.75 -129.99 -1.27 -12.74 16 26 C 0.01 0.23 10.24 113.37 1.16 1.39 16 27 H 0.03 1.44 7.85 -2.39 -0.02 1.42 16 28 H 0.05 2.11 5.64 -2.39 -0.01 2.10 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.04 1.96 3.22 -2.39 -0.01 1.95 16 32 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 33 H 0.41 13.26 8.24 -92.71 -0.76 12.50 16 34 H 0.10 2.06 7.71 -2.38 -0.02 2.04 16 35 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 42 H 0.07 1.37 3.85 -2.39 -0.01 1.36 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.24 339.66 3.30 -65.95 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.16 Total: 23.94 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 4.41 Total: -13.85 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -1.90 Total: -83.88 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.05 Total: -38.70 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.55 kcal Total: -69.24 3.30 -65.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.740 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds