Wall clock time and date at job start Tue Mar 31 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 H 1.09001 * 109.47494 * 304.99934 * 3 2 1 5 5 C 1.50705 * 109.46875 * 184.99922 * 3 2 1 6 6 H 1.07999 * 120.00133 * 240.00048 * 5 3 2 7 7 C 1.37871 * 120.00025 * 60.00382 * 5 3 2 8 8 N 1.31518 * 119.99889 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00223 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46882 * 119.99785 * 9 7 5 12 12 H 1.48492 * 109.47468 * 239.99746 * 9 7 5 13 13 N 1.46503 * 109.47174 * 65.00186 * 3 2 1 14 14 C 1.34775 * 119.99802 * 274.99934 * 13 3 2 15 15 O 1.21272 * 120.00396 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99573 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.47416 * 304.99850 * 16 14 13 18 18 C 1.52996 * 109.46957 * 65.00123 * 16 14 13 19 19 C 1.50702 * 109.47203 * 184.99736 * 18 16 14 20 20 C 1.38234 * 119.99895 * 269.72772 * 19 18 16 21 21 C 1.38240 * 120.00062 * 180.32314 * 20 19 18 22 22 C 1.38235 * 119.99708 * 359.94741 * 21 20 19 23 23 C 1.38234 * 120.00204 * 0.02562 * 22 21 20 24 24 C 1.38230 * 119.99885 * 0.02562 * 23 22 21 25 25 O 1.42904 * 109.46800 * 184.99515 * 16 14 13 26 26 C 1.42904 * 113.99493 * 149.99997 * 25 16 14 27 27 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46575 * 299.99845 * 1 2 3 29 29 H 1.09000 * 109.47243 * 59.99487 * 1 2 3 30 30 H 1.08998 * 109.46915 * 239.99775 * 2 1 3 31 31 H 1.09000 * 109.46952 * 120.00049 * 2 1 3 32 32 H 0.97004 * 119.99904 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99580 * 94.99499 * 13 3 2 34 34 H 1.09003 * 109.47252 * 64.99914 * 18 16 14 35 35 H 1.09001 * 109.47630 * 304.99968 * 18 16 14 36 36 H 1.08001 * 120.00279 * 0.27436 * 20 19 18 37 37 H 1.07997 * 119.99852 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99766 * 180.02562 * 22 21 20 39 39 H 1.07992 * 119.99701 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47486 * 300.00098 * 26 25 16 42 42 H 1.08996 * 109.47001 * 60.00872 * 26 25 16 43 43 H 1.09006 * 109.46581 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5988 1.5461 -0.1942 11 1 6.4970 -0.5177 -1.4630 12 1 6.3991 1.6166 -2.6101 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3392 2.6327 0.4342 16 6 0.0364 3.3376 2.6550 17 1 0.1526 2.6374 3.4821 18 6 0.9291 4.5577 2.8903 19 6 0.6134 5.1591 4.2356 20 6 -0.3533 6.1412 4.3439 21 6 -0.6382 6.6977 5.5768 22 6 0.0429 6.2712 6.7016 23 6 1.0092 5.2887 6.5934 24 6 1.2948 4.7330 5.3603 25 8 -1.3279 3.7547 2.5718 26 6 -2.0092 3.7678 3.8279 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0611 -2.9499 33 1 2.2721 2.1230 1.9978 34 1 0.7472 5.2969 2.1102 35 1 1.9753 4.2528 2.8651 36 1 -0.8855 6.4744 3.4651 37 1 -1.3932 7.4653 5.6614 38 1 -0.1800 6.7057 7.6649 39 1 1.5416 4.9559 7.4720 40 1 2.0501 3.9657 5.2756 41 1 -2.0049 2.7646 4.2542 42 1 -1.5041 4.4537 4.5080 43 1 -3.0384 4.0948 3.6796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295026046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:36 Heat of formation + Delta-G solvation = -62.482742 kcal Electronic energy + Delta-G solvation = -23679.004003 eV Core-core repulsion = 20303.138587 eV Total energy + Delta-G solvation = -3375.865416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10107 -38.92027 -37.21944 -34.92719 -33.39392 -32.26617 -31.12104 -30.97448 -29.36130 -26.94852 -26.23379 -24.34935 -22.86092 -22.71718 -21.21614 -20.27165 -19.30561 -17.48445 -16.87817 -16.65766 -15.86836 -15.71197 -15.12848 -15.04500 -14.92626 -14.42410 -14.19959 -13.70742 -13.55672 -13.24479 -12.83303 -12.68217 -12.60332 -12.53030 -12.13499 -11.64355 -11.42137 -11.26199 -11.23884 -11.15264 -10.97040 -10.86396 -10.80834 -10.29942 -10.18477 -9.90757 -9.61329 -9.07502 -9.03822 -8.94564 -8.52939 -8.43181 -7.81509 -6.12414 -4.21950 1.17923 1.24474 3.23301 3.30258 3.32606 3.34959 3.53391 3.66204 4.29200 4.42603 4.69738 4.77349 4.85885 4.98317 5.06127 5.17457 5.19883 5.30596 5.35698 5.45341 5.48815 5.56591 5.60443 5.74631 5.82497 5.92142 6.06408 6.31802 6.35992 6.41025 6.47817 6.51018 6.67929 6.85151 7.05152 7.14378 7.25824 7.38382 7.45782 7.62984 7.74643 7.90827 8.18438 8.66155 8.78635 9.14375 9.45605 10.92909 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.004028 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.453269 B = 6948.853692 C = 7925.493401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.526 6.526 16 C 0.079 3.921 17 H 0.079 0.921 18 C -0.102 4.102 19 C -0.079 4.079 20 C -0.105 4.105 21 C -0.125 4.125 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.118 4.118 25 O -0.353 6.353 26 C 0.013 3.987 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.036 0.964 42 H 0.058 0.942 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.556 8.752 17.111 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.402 6.402 16 C 0.017 3.983 17 H 0.097 0.903 18 C -0.140 4.140 19 C -0.079 4.079 20 C -0.123 4.123 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.136 4.136 25 O -0.271 6.271 26 C -0.083 4.083 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.192 8.670 16.040 19.256 hybrid contribution 1.367 -0.125 0.620 1.506 sum -4.825 8.545 16.660 19.336 Atomic orbital electron populations 1.21845 0.98327 0.98046 1.01292 1.21944 0.92611 0.99826 1.02279 1.18801 0.94199 0.89136 0.80868 0.93237 1.21258 0.90653 1.38964 1.06291 0.92021 1.24885 0.98568 0.94823 0.95401 1.69910 1.35019 1.37622 1.09331 0.86411 0.84909 0.77757 0.78118 1.19759 1.20902 1.20888 1.46454 1.14236 1.56286 1.18666 1.20034 0.83128 0.79743 0.88549 1.90689 1.51084 1.58656 1.39759 1.22014 0.83820 0.95071 0.97431 0.90346 1.21143 1.00321 0.97994 0.94514 1.19889 0.96274 0.96634 0.95090 1.21125 0.97207 0.96022 0.97965 1.21154 1.00170 1.00230 0.92716 1.21136 0.96933 0.97848 0.98492 1.21129 0.98127 0.97147 0.97471 1.21136 0.99977 1.00231 0.92235 1.88041 1.22027 1.87706 1.29283 1.23204 0.97595 1.00574 0.86936 0.95846 0.94343 0.93108 0.88250 0.95051 0.92613 0.78102 0.89297 0.89071 0.85617 0.86126 0.86332 0.86139 0.85781 0.94528 0.92399 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.16 0.32 -2.81 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.71 -14.29 4.92 -54.93 -0.27 -14.56 16 14 C 0.50 10.06 5.75 -10.98 -0.06 10.00 16 15 O -0.53 -12.79 13.65 -14.30 -0.20 -12.99 16 16 C 0.08 1.21 2.73 -27.88 -0.08 1.13 16 17 H 0.08 1.06 7.79 -51.93 -0.40 0.65 16 18 C -0.10 -1.33 5.03 -27.88 -0.14 -1.47 16 19 C -0.08 -0.90 3.87 -104.62 -0.41 -1.30 16 20 C -0.11 -1.13 6.81 -39.58 -0.27 -1.40 16 21 C -0.12 -1.14 9.96 -39.58 -0.39 -1.54 16 22 C -0.13 -1.10 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 24 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 25 O -0.35 -5.76 9.75 -55.09 -0.54 -6.29 16 26 C 0.01 0.16 10.24 101.05 1.03 1.20 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 29 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.39 6.66 8.24 -40.82 -0.34 6.32 16 34 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.09 1.11 7.71 -51.93 -0.40 0.71 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.06 0.64 3.87 -51.93 -0.20 0.44 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -30.97 346.44 -8.56 -39.53 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.51 Total: 7.51 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.87 Total: -9.87 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.36 Total: -38.45 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.73 Total: -19.28 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.97 -8.56 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.951 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds