Wall clock time and date at job start Tue Mar 31 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 H 1.09001 * 109.47494 * 304.99934 * 3 2 1 5 5 C 1.50705 * 109.46875 * 184.99922 * 3 2 1 6 6 H 1.07999 * 120.00133 * 240.00048 * 5 3 2 7 7 C 1.37871 * 120.00025 * 60.00382 * 5 3 2 8 8 N 1.31518 * 119.99889 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00223 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46882 * 119.99785 * 9 7 5 12 12 H 1.48492 * 109.47468 * 239.99746 * 9 7 5 13 13 N 1.46503 * 109.47174 * 65.00186 * 3 2 1 14 14 C 1.34775 * 119.99802 * 274.99934 * 13 3 2 15 15 O 1.21272 * 120.00396 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99573 * 179.97438 * 14 13 3 17 17 H 1.08992 * 109.47416 * 304.99850 * 16 14 13 18 18 C 1.52996 * 109.46957 * 65.00123 * 16 14 13 19 19 C 1.50702 * 109.47203 * 184.99736 * 18 16 14 20 20 C 1.38234 * 119.99895 * 269.72772 * 19 18 16 21 21 C 1.38240 * 120.00062 * 180.32314 * 20 19 18 22 22 C 1.38235 * 119.99708 * 359.94741 * 21 20 19 23 23 C 1.38234 * 120.00204 * 0.02562 * 22 21 20 24 24 C 1.38230 * 119.99885 * 0.02562 * 23 22 21 25 25 O 1.42904 * 109.46800 * 184.99515 * 16 14 13 26 26 C 1.42904 * 113.99493 * 149.99997 * 25 16 14 27 27 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46575 * 299.99845 * 1 2 3 29 29 H 1.09000 * 109.47243 * 59.99487 * 1 2 3 30 30 H 1.08998 * 109.46915 * 239.99775 * 2 1 3 31 31 H 1.09000 * 109.46952 * 120.00049 * 2 1 3 32 32 H 0.97004 * 119.99904 * 179.97438 * 8 7 5 33 33 H 0.97005 * 119.99580 * 94.99499 * 13 3 2 34 34 H 1.09003 * 109.47252 * 64.99914 * 18 16 14 35 35 H 1.09001 * 109.47630 * 304.99968 * 18 16 14 36 36 H 1.08001 * 120.00279 * 0.27436 * 20 19 18 37 37 H 1.07997 * 119.99852 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99766 * 180.02562 * 22 21 20 39 39 H 1.07992 * 119.99701 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00356 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.47486 * 300.00098 * 26 25 16 42 42 H 1.08996 * 109.47001 * 60.00872 * 26 25 16 43 43 H 1.09006 * 109.46581 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5988 1.5461 -0.1942 11 1 6.4970 -0.5177 -1.4630 12 1 6.3991 1.6166 -2.6101 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3392 2.6327 0.4342 16 6 0.0364 3.3376 2.6550 17 1 0.1526 2.6374 3.4821 18 6 0.9291 4.5577 2.8903 19 6 0.6134 5.1591 4.2356 20 6 -0.3533 6.1412 4.3439 21 6 -0.6382 6.6977 5.5768 22 6 0.0429 6.2712 6.7016 23 6 1.0092 5.2887 6.5934 24 6 1.2948 4.7330 5.3603 25 8 -1.3279 3.7547 2.5718 26 6 -2.0092 3.7678 3.8279 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0611 -2.9499 33 1 2.2721 2.1230 1.9978 34 1 0.7472 5.2969 2.1102 35 1 1.9753 4.2528 2.8651 36 1 -0.8855 6.4744 3.4651 37 1 -1.3932 7.4653 5.6614 38 1 -0.1800 6.7057 7.6649 39 1 1.5416 4.9559 7.4720 40 1 2.0501 3.9657 5.2756 41 1 -2.0049 2.7646 4.2542 42 1 -1.5041 4.4537 4.5080 43 1 -3.0384 4.0948 3.6796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295026046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:35 Heat of formation + Delta-G solvation = -80.757000 kcal Electronic energy + Delta-G solvation = -23679.796434 eV Core-core repulsion = 20303.138587 eV Total energy + Delta-G solvation = -3376.657847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.28620 -40.14593 -38.45398 -36.80093 -34.62823 -33.97006 -32.74831 -31.79852 -30.52655 -28.81486 -27.20748 -25.70713 -24.65714 -23.43030 -22.23233 -21.84486 -21.08966 -19.13205 -17.93146 -17.75614 -17.47002 -17.10022 -16.58020 -16.12091 -15.95103 -15.82154 -15.70798 -15.23755 -14.58561 -14.33860 -14.22725 -13.91572 -13.77610 -13.64052 -13.53738 -13.30320 -13.16863 -12.86553 -12.76604 -12.67507 -12.16111 -12.12461 -12.03900 -11.94009 -11.76342 -11.58474 -11.03952 -10.99792 -10.58179 -10.44113 -9.74800 -9.64620 -9.38213 -8.14537 -6.31906 0.43004 0.53265 1.45482 1.46836 1.58327 1.78516 2.14473 2.45379 2.89562 3.13465 3.16624 3.66536 3.92459 3.97768 4.10254 4.13159 4.22920 4.35047 4.44252 4.48522 4.50904 4.56487 4.59721 4.67621 4.75814 4.79205 4.86467 4.91787 5.06231 5.16758 5.21701 5.25377 5.43762 5.56021 5.61635 5.62853 5.67134 5.73556 5.79065 5.90643 6.14161 6.14795 6.17999 6.76208 6.98527 7.35033 7.57522 8.91123 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.004028 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.453269 B = 6948.853692 C = 7925.493401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.699 5.699 14 C 0.498 3.502 15 O -0.575 6.575 16 C 0.092 3.908 17 H 0.104 0.896 18 C -0.093 4.093 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.124 4.124 25 O -0.384 6.384 26 C 0.011 3.989 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 9.259 20.368 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.349 5.349 14 C 0.283 3.717 15 O -0.454 6.454 16 C 0.030 3.970 17 H 0.122 0.878 18 C -0.131 4.131 19 C -0.093 4.093 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.142 4.142 25 O -0.302 6.302 26 C -0.085 4.085 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.273 9.192 19.352 22.063 hybrid contribution 1.008 -0.228 -0.354 1.092 sum -4.266 8.963 18.998 21.435 Atomic orbital electron populations 1.21681 0.97248 0.99104 1.00073 1.21795 0.93469 0.99244 1.01486 1.18388 0.93782 0.89081 0.81197 0.98570 1.21602 0.91203 1.38771 1.06728 0.90703 1.25771 1.03264 0.94417 0.95048 1.70065 1.37006 1.38461 1.09905 0.85324 0.79175 0.77772 0.78217 1.18234 1.20537 1.21225 1.46176 1.15021 1.55959 1.17770 1.20922 0.82165 0.78786 0.89784 1.90665 1.52425 1.60323 1.42033 1.21874 0.84214 0.96154 0.94709 0.87849 1.21014 1.00095 0.96547 0.95461 1.19722 0.97571 0.97670 0.94326 1.21157 0.97436 0.96470 0.98538 1.21398 1.00523 1.00354 0.92207 1.21494 0.96103 0.97255 0.99351 1.21442 0.98103 0.96829 0.97735 1.21318 1.00048 1.00588 0.92262 1.88000 1.22470 1.87858 1.31846 1.23391 0.97982 1.01476 0.85651 0.93480 0.94039 0.95813 0.90921 0.93722 0.92660 0.76033 0.91170 0.88305 0.86521 0.84288 0.83847 0.83926 0.84706 0.93741 0.91101 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.52 71.98 0.61 -5.12 16 2 C -0.12 -5.99 5.45 30.60 0.17 -5.82 16 3 C 0.28 14.26 2.24 44.25 0.10 14.36 16 4 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 5 C -0.54 -28.36 8.73 25.60 0.22 -28.14 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -52.34 11.29 21.45 0.24 -52.10 16 9 Si 0.97 41.63 29.54 68.60 2.03 43.65 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 13 N -0.70 -28.43 4.92 -446.09 -2.20 -30.63 16 14 C 0.50 20.29 5.75 87.66 0.50 20.79 16 15 O -0.57 -29.20 13.65 15.98 0.22 -28.98 16 16 C 0.09 2.77 2.73 29.85 0.08 2.85 16 17 H 0.10 2.58 7.79 -2.39 -0.02 2.57 16 18 C -0.09 -2.39 5.03 29.85 0.15 -2.24 16 19 C -0.09 -1.97 3.87 -19.87 -0.08 -2.04 16 20 C -0.12 -2.37 6.81 22.27 0.15 -2.21 16 21 C -0.13 -2.00 9.96 22.27 0.22 -1.78 16 22 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 23 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 24 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 25 O -0.38 -12.42 9.75 -129.99 -1.27 -13.68 16 26 C 0.01 0.24 10.24 113.37 1.16 1.40 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.86 5.65 -2.39 -0.01 1.85 16 29 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 31 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 33 H 0.40 13.51 8.24 -92.70 -0.76 12.75 16 34 H 0.07 2.03 8.08 -2.39 -0.02 2.01 16 35 H 0.10 2.31 7.71 -2.39 -0.02 2.29 16 36 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.04 0.94 8.08 -2.39 -0.02 0.92 16 42 H 0.07 1.44 3.87 -2.39 -0.01 1.43 16 43 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -69.24 346.44 3.67 -65.58 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.24 Total: 27.93 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 4.41 Total: -11.77 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -1.95 Total: -82.73 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.05 Total: -42.66 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -69.24 3.67 -65.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295026046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.181 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds