Wall clock time and date at job start Tue Mar 31 2020 06:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47065 * 2 1 4 4 N 1.46907 * 109.47129 * 119.99885 * 2 1 3 5 5 C 1.46894 * 110.99907 * 171.04506 * 4 2 1 6 6 C 1.50700 * 109.47138 * 293.95425 * 5 4 2 7 7 C 1.38301 * 119.92712 * 269.72590 * 6 5 4 8 8 C 1.38099 * 120.06651 * 179.72934 * 7 6 5 9 9 C 1.38876 * 119.92930 * 0.56575 * 8 7 6 10 10 O 1.35750 * 120.07009 * 179.68828 * 9 8 7 11 11 C 1.34836 * 117.00191 * 174.49019 * 10 9 8 12 12 H 1.07997 * 119.99899 * 5.05006 * 11 10 9 13 13 C 1.38649 * 120.00013 * 185.05722 * 11 10 9 14 14 N 1.31563 * 120.00049 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47150 * 89.99789 * 15 13 11 17 17 H 1.48496 * 109.47600 * 209.99977 * 15 13 11 18 18 H 1.48506 * 109.46995 * 329.99965 * 15 13 11 19 19 C 1.38882 * 119.86482 * 359.70745 * 9 8 7 20 20 C 1.38101 * 119.92700 * 359.97438 * 19 9 8 21 21 C 1.46901 * 110.99737 * 295.00079 * 4 2 1 22 22 C 1.54036 * 113.81432 * 273.50848 * 21 4 2 23 23 O 1.44444 * 85.42532 * 223.23896 * 22 21 4 24 24 C 1.44182 * 93.38163 * 24.08857 * 23 22 21 25 25 H 1.09006 * 109.46693 * 300.00169 * 1 2 3 26 26 H 1.08994 * 109.46868 * 60.00163 * 1 2 3 27 27 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46731 * 239.99840 * 2 1 3 29 29 H 1.08997 * 109.46674 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46912 * 300.00006 * 3 2 1 31 31 H 1.08997 * 109.47355 * 59.99755 * 3 2 1 32 32 H 1.09004 * 109.47087 * 53.95220 * 5 4 2 33 33 H 1.08998 * 109.47244 * 173.95116 * 5 4 2 34 34 H 1.07998 * 119.96970 * 359.97438 * 7 6 5 35 35 H 1.07995 * 120.03503 * 180.27697 * 8 7 6 36 36 H 0.96997 * 120.00117 * 180.02562 * 14 13 11 37 37 H 1.08003 * 120.03647 * 179.97438 * 19 9 8 38 38 H 1.08005 * 119.96477 * 179.97438 * 20 19 9 39 39 H 1.09002 * 113.00301 * 45.33376 * 21 4 2 40 40 H 1.09000 * 113.86371 * 337.33905 * 22 21 4 41 41 H 1.08994 * 113.86782 * 109.05152 * 22 21 4 42 42 H 1.08993 * 113.86277 * 221.77112 * 24 23 22 43 43 H 1.08997 * 113.98445 * 90.07473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4724 -0.8997 1.1315 6 6 3.7916 -1.8550 0.0106 7 6 3.8473 -3.2147 0.2575 8 6 4.1340 -4.0931 -0.7687 9 6 4.3782 -3.6090 -2.0473 10 8 4.6666 -4.4695 -3.0568 11 6 4.7802 -3.9456 -4.2941 12 1 4.7240 -2.8764 -4.4349 13 6 4.9691 -4.7797 -5.3854 14 7 5.0379 -6.0823 -5.2137 15 14 5.1258 -4.0541 -7.0995 16 1 6.5541 -3.7664 -7.3866 17 1 4.6059 -5.0236 -8.0970 18 1 4.3419 -2.7952 -7.1777 19 6 4.3272 -2.2427 -2.2909 20 6 4.0334 -1.3699 -1.2617 21 6 1.6487 0.0392 2.4181 22 6 2.6544 1.1363 2.8153 23 8 2.4859 0.6415 4.1618 24 6 2.0710 -0.6668 3.7204 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9673 0.0540 0.9481 33 1 3.8246 -1.3162 2.0752 34 1 3.6624 -3.5902 1.2531 35 1 4.1729 -5.1551 -0.5763 36 1 5.1704 -6.6658 -5.9772 37 1 4.5171 -1.8632 -3.2840 38 1 3.9940 -0.3072 -1.4504 39 1 0.6112 0.3734 2.4150 40 1 3.6554 0.9841 2.4116 41 1 2.2826 2.1501 2.6668 42 1 1.2374 -1.0800 4.2882 43 1 2.8919 -1.3725 3.5932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295449478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:34 Heat of formation + Delta-G solvation = 0.472250 kcal Electronic energy + Delta-G solvation = -23611.641794 eV Core-core repulsion = 20238.506312 eV Total energy + Delta-G solvation = -3373.135482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12504 -39.08535 -37.64569 -36.14766 -32.51075 -32.00283 -30.30752 -29.90924 -27.75853 -27.47349 -26.36490 -25.57095 -24.43137 -22.05957 -21.12492 -20.83348 -18.88857 -17.99230 -17.12177 -16.81720 -16.60455 -16.19100 -15.07448 -14.91222 -14.60622 -14.22516 -14.15791 -13.82208 -13.65432 -13.36955 -13.12361 -13.04914 -12.71273 -12.48879 -12.27091 -12.08068 -11.93563 -11.71595 -11.35909 -11.26868 -11.18739 -11.00389 -10.82187 -10.75390 -10.62158 -10.44940 -10.41315 -9.72956 -9.34545 -8.84817 -8.27831 -8.16059 -7.18722 -6.46541 -4.05498 2.20303 2.25572 3.10899 3.12081 3.16879 3.50656 3.80443 3.95141 4.25152 4.59390 4.70055 4.89108 4.92968 5.04687 5.06714 5.08134 5.19469 5.27885 5.29203 5.33285 5.41026 5.51419 5.62864 5.64521 5.70789 5.73554 5.76800 5.87030 5.91468 5.93539 5.98734 6.17915 6.20343 6.23394 6.41926 6.69004 6.88135 6.97943 7.05577 7.11947 7.25405 7.37622 7.43133 7.81377 7.98388 8.99094 9.69389 10.71470 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027536 B = 0.003496 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.618119 B = 8007.973037 C = 8521.866771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.190 4.190 4 N -0.516 5.516 5 C 0.104 3.896 6 C -0.178 4.178 7 C -0.053 4.053 8 C -0.193 4.193 9 C 0.156 3.844 10 O -0.178 6.178 11 C -0.392 4.392 12 H 0.092 0.908 13 C 0.039 3.961 14 N -0.862 5.862 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.268 1.268 19 C -0.234 4.234 20 C -0.066 4.066 21 C 0.023 3.977 22 C -0.005 4.005 23 O -0.385 6.385 24 C 0.038 3.962 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.270 0.730 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 13.099 11.644 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.248 4.248 4 N -0.240 5.240 5 C -0.022 4.022 6 C -0.180 4.180 7 C -0.071 4.071 8 C -0.213 4.213 9 C 0.102 3.898 10 O -0.081 6.081 11 C -0.468 4.468 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.497 5.497 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.253 4.253 20 C -0.085 4.085 21 C -0.087 4.087 22 C -0.083 4.083 23 O -0.303 6.303 24 C -0.039 4.039 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.544 12.283 11.762 18.222 hybrid contribution 0.448 1.150 -1.142 1.682 sum -6.096 13.434 10.620 18.177 Atomic orbital electron populations 1.21844 0.94587 1.02501 1.01069 1.21779 0.95465 0.92190 0.94356 1.22632 1.01677 0.98270 1.02237 1.62192 1.13819 1.46926 1.01020 1.20977 0.86659 0.96824 0.97758 1.19008 1.11178 0.93718 0.94075 1.20439 0.97137 0.92148 0.97425 1.20214 1.10258 0.99612 0.91198 1.19398 0.91638 0.89348 0.89399 1.83981 1.75658 1.33588 1.14884 1.21315 1.51680 0.93337 0.80492 0.89107 1.25284 0.96620 0.95177 0.99406 1.70039 1.45399 1.02550 1.31725 0.85725 0.78837 0.78654 0.80289 1.19886 1.20230 1.19209 1.21115 1.11004 0.93166 1.00057 1.20577 0.97751 0.97862 0.92262 1.25080 1.00381 0.92131 0.91058 1.24998 1.00726 0.99872 0.82716 1.89705 1.89418 1.25563 1.25573 1.24199 0.99615 0.87202 0.92892 0.93172 0.92358 0.91682 0.88337 0.92400 0.92037 0.92447 0.94192 0.90669 0.87150 0.86589 0.92007 0.85685 0.87951 0.86796 0.89559 0.89495 0.88984 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.15 37.16 0.34 -1.11 16 2 C 0.07 0.80 2.70 -67.71 -0.18 0.62 16 3 C -0.19 -1.83 7.88 37.16 0.29 -1.54 16 4 N -0.52 -6.06 4.61 -228.01 -1.05 -7.11 16 5 C 0.10 1.32 3.75 -4.98 -0.02 1.30 16 6 C -0.18 -2.88 4.91 -104.58 -0.51 -3.39 16 7 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 8 C -0.19 -4.02 9.99 -39.40 -0.39 -4.42 16 9 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 10 O -0.18 -5.04 9.76 0.03 0.00 -5.04 16 11 C -0.39 -10.86 9.49 30.88 0.29 -10.56 16 12 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 13 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 14 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 15 Si 0.94 20.33 29.55 -169.99 -5.02 15.31 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 C -0.23 -4.94 9.17 -39.39 -0.36 -5.30 16 20 C -0.07 -1.14 7.85 -39.61 -0.31 -1.45 16 21 C 0.02 0.23 3.28 -66.63 -0.22 0.01 16 22 C 0.00 -0.05 6.58 37.64 0.25 0.20 16 23 O -0.38 -4.60 12.46 -35.23 -0.44 -5.04 16 24 C 0.04 0.39 8.68 37.64 0.33 0.71 16 25 H 0.05 0.45 6.34 -51.93 -0.33 0.12 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.37 5.54 -51.93 -0.29 1.09 16 29 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.50 5.32 -51.93 -0.28 0.22 16 32 H 0.04 0.48 4.78 -51.93 -0.25 0.23 16 33 H 0.08 0.90 5.94 -51.93 -0.31 0.60 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.13 2.66 5.64 -52.48 -0.30 2.37 16 38 H 0.10 1.53 7.89 -52.48 -0.41 1.12 16 39 H 0.11 1.07 6.19 -51.93 -0.32 0.75 16 40 H 0.09 0.87 5.71 -51.93 -0.30 0.57 16 41 H 0.09 0.76 7.11 -51.93 -0.37 0.39 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.88 6.26 -51.93 -0.32 0.55 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -30.06 332.09 -7.74 -37.81 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.76 Total: 5.28 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.24 Total: -21.81 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: -0.29 Total: -31.51 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.44 Total: -10.08 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.06 -7.74 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295449478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.280 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds