Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47065 * 2 1 4 4 N 1.46907 * 109.47129 * 119.99885 * 2 1 3 5 5 C 1.46894 * 110.99907 * 171.04506 * 4 2 1 6 6 C 1.50700 * 109.47138 * 293.95425 * 5 4 2 7 7 C 1.38301 * 119.92712 * 269.72590 * 6 5 4 8 8 C 1.38099 * 120.06651 * 179.72934 * 7 6 5 9 9 C 1.38876 * 119.92930 * 0.56575 * 8 7 6 10 10 O 1.35750 * 120.07009 * 179.68828 * 9 8 7 11 11 C 1.34836 * 117.00191 * 174.49019 * 10 9 8 12 12 H 1.07997 * 119.99899 * 5.05006 * 11 10 9 13 13 C 1.38649 * 120.00013 * 185.05722 * 11 10 9 14 14 N 1.31563 * 120.00049 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00223 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47150 * 89.99789 * 15 13 11 17 17 H 1.48496 * 109.47600 * 209.99977 * 15 13 11 18 18 H 1.48506 * 109.46995 * 329.99965 * 15 13 11 19 19 C 1.38882 * 119.86482 * 359.70745 * 9 8 7 20 20 C 1.38101 * 119.92700 * 359.97438 * 19 9 8 21 21 C 1.46901 * 110.99737 * 295.00079 * 4 2 1 22 22 C 1.54036 * 113.81432 * 273.50848 * 21 4 2 23 23 O 1.44444 * 85.42532 * 223.23896 * 22 21 4 24 24 C 1.44182 * 93.38163 * 24.08857 * 23 22 21 25 25 H 1.09006 * 109.46693 * 300.00169 * 1 2 3 26 26 H 1.08994 * 109.46868 * 60.00163 * 1 2 3 27 27 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46731 * 239.99840 * 2 1 3 29 29 H 1.08997 * 109.46674 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46912 * 300.00006 * 3 2 1 31 31 H 1.08997 * 109.47355 * 59.99755 * 3 2 1 32 32 H 1.09004 * 109.47087 * 53.95220 * 5 4 2 33 33 H 1.08998 * 109.47244 * 173.95116 * 5 4 2 34 34 H 1.07998 * 119.96970 * 359.97438 * 7 6 5 35 35 H 1.07995 * 120.03503 * 180.27697 * 8 7 6 36 36 H 0.96997 * 120.00117 * 180.02562 * 14 13 11 37 37 H 1.08003 * 120.03647 * 179.97438 * 19 9 8 38 38 H 1.08005 * 119.96477 * 179.97438 * 20 19 9 39 39 H 1.09002 * 113.00301 * 45.33376 * 21 4 2 40 40 H 1.09000 * 113.86371 * 337.33905 * 22 21 4 41 41 H 1.08994 * 113.86782 * 109.05152 * 22 21 4 42 42 H 1.08993 * 113.86277 * 221.77112 * 24 23 22 43 43 H 1.08997 * 113.98445 * 90.07473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4724 -0.8997 1.1315 6 6 3.7916 -1.8550 0.0106 7 6 3.8473 -3.2147 0.2575 8 6 4.1340 -4.0931 -0.7687 9 6 4.3782 -3.6090 -2.0473 10 8 4.6666 -4.4695 -3.0568 11 6 4.7802 -3.9456 -4.2941 12 1 4.7240 -2.8764 -4.4349 13 6 4.9691 -4.7797 -5.3854 14 7 5.0379 -6.0823 -5.2137 15 14 5.1258 -4.0541 -7.0995 16 1 6.5541 -3.7664 -7.3866 17 1 4.6059 -5.0236 -8.0970 18 1 4.3419 -2.7952 -7.1777 19 6 4.3272 -2.2427 -2.2909 20 6 4.0334 -1.3699 -1.2617 21 6 1.6487 0.0392 2.4181 22 6 2.6544 1.1363 2.8153 23 8 2.4859 0.6415 4.1618 24 6 2.0710 -0.6668 3.7204 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9673 0.0540 0.9481 33 1 3.8246 -1.3162 2.0752 34 1 3.6624 -3.5902 1.2531 35 1 4.1729 -5.1551 -0.5763 36 1 5.1704 -6.6658 -5.9772 37 1 4.5171 -1.8632 -3.2840 38 1 3.9940 -0.3072 -1.4504 39 1 0.6112 0.3734 2.4150 40 1 3.6554 0.9841 2.4116 41 1 2.2826 2.1501 2.6668 42 1 1.2374 -1.0800 4.2882 43 1 2.8919 -1.3725 3.5932 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295449478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = -19.894565 kcal Electronic energy + Delta-G solvation = -23612.524965 eV Core-core repulsion = 20238.506312 eV Total energy + Delta-G solvation = -3374.018654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99132 -40.71421 -38.90231 -37.54528 -34.34521 -33.16626 -31.83868 -31.19364 -28.58874 -28.52977 -27.38477 -27.11055 -25.70730 -23.63978 -22.31834 -21.99466 -19.99718 -19.70383 -18.72167 -17.84341 -17.51616 -17.05903 -16.41005 -16.33033 -16.05361 -15.59634 -15.46631 -15.19611 -15.11358 -14.50007 -14.38372 -14.08781 -14.01623 -13.82354 -13.55832 -13.12394 -12.99922 -12.86968 -12.73058 -12.44372 -12.33335 -12.16602 -12.14521 -12.07703 -11.97331 -11.79404 -11.36537 -11.15454 -10.79110 -10.52876 -9.73712 -9.19724 -8.85514 -8.46439 -6.14574 0.62127 0.69241 1.34947 1.44087 1.52418 2.17986 2.64226 2.82608 2.99262 3.23004 3.49354 3.54790 3.86008 3.96985 4.03989 4.12909 4.19370 4.21784 4.29169 4.35136 4.46309 4.51769 4.58390 4.62992 4.69604 4.76377 4.79766 4.85402 4.94935 5.00060 5.07830 5.14575 5.15174 5.17051 5.20765 5.32254 5.33935 5.43076 5.59753 5.73254 5.81979 6.03966 6.10493 6.20644 6.26454 6.98408 7.80112 8.76938 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027536 B = 0.003496 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.618119 B = 8007.973037 C = 8521.866771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 C -0.185 4.185 4 N -0.524 5.524 5 C 0.106 3.894 6 C -0.150 4.150 7 C -0.048 4.048 8 C -0.206 4.206 9 C 0.114 3.886 10 O -0.234 6.234 11 C -0.413 4.413 12 H 0.101 0.899 13 C -0.023 4.023 14 N -0.922 5.922 15 Si 1.018 2.982 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.253 1.253 19 C -0.242 4.242 20 C -0.059 4.059 21 C 0.029 3.971 22 C -0.003 4.003 23 O -0.406 6.406 24 C 0.035 3.965 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.272 0.728 37 H 0.116 0.884 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 16.318 13.237 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 C -0.243 4.243 4 N -0.248 5.248 5 C -0.020 4.020 6 C -0.151 4.151 7 C -0.066 4.066 8 C -0.225 4.225 9 C 0.064 3.936 10 O -0.141 6.141 11 C -0.489 4.489 12 H 0.119 0.881 13 C -0.220 4.220 14 N -0.560 5.560 15 Si 0.837 3.163 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.176 1.176 19 C -0.261 4.261 20 C -0.077 4.077 21 C -0.080 4.080 22 C -0.081 4.081 23 O -0.324 6.324 24 C -0.042 4.042 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.162 0.838 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.472 15.547 13.409 21.848 hybrid contribution 0.628 0.325 -1.274 1.457 sum -6.844 15.872 12.135 21.119 Atomic orbital electron populations 1.21812 0.93713 1.01886 1.02266 1.21762 0.96226 0.93026 0.93061 1.22576 1.01496 0.96970 1.03267 1.62103 1.12752 1.48030 1.01910 1.20977 0.87874 0.96551 0.96610 1.19509 1.06903 0.94001 0.94691 1.20825 0.95604 0.92316 0.97897 1.20453 1.10622 1.00236 0.91178 1.19937 0.93660 0.90387 0.89643 1.83944 1.78862 1.35471 1.15805 1.21809 1.51912 0.94086 0.81081 0.88145 1.26578 0.96032 0.95517 1.03919 1.70188 1.48326 1.04339 1.33136 0.84603 0.79358 0.78246 0.74114 1.18804 1.19628 1.17619 1.21203 1.11389 0.92658 1.00881 1.20879 0.96241 0.98891 0.91738 1.25097 1.01002 0.92055 0.89852 1.25083 1.00666 1.00564 0.81774 1.89701 1.89587 1.26422 1.26712 1.24319 1.00088 0.86769 0.92990 0.91538 0.91653 0.93206 0.91084 0.92553 0.91470 0.91051 0.92611 0.89247 0.83808 0.87171 0.91876 0.86578 0.84847 0.85737 0.89515 0.88053 0.87718 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.15 71.98 0.66 -1.79 16 2 C 0.07 1.33 2.70 44.92 0.12 1.45 16 3 C -0.18 -2.85 7.88 71.98 0.57 -2.28 16 4 N -0.52 -10.41 4.61 -886.31 -4.08 -14.49 16 5 C 0.11 2.27 3.75 85.56 0.32 2.59 16 6 C -0.15 -4.44 4.91 -19.84 -0.10 -4.54 16 7 C -0.05 -1.58 9.69 22.25 0.22 -1.37 16 8 C -0.21 -8.75 9.99 22.39 0.22 -8.52 16 9 C 0.11 5.67 6.65 22.58 0.15 5.82 16 10 O -0.23 -14.18 9.76 -22.80 -0.22 -14.40 16 11 C -0.41 -24.10 9.49 67.92 0.64 -23.46 16 12 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 13 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 14 N -0.92 -56.86 13.67 21.61 0.30 -56.56 16 15 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 18 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 19 C -0.24 -10.37 9.17 22.39 0.21 -10.17 16 20 C -0.06 -1.95 7.85 22.25 0.17 -1.77 16 21 C 0.03 0.47 3.28 45.62 0.15 0.62 16 22 C 0.00 -0.04 6.58 72.30 0.48 0.43 16 23 O -0.41 -8.32 12.46 -148.98 -1.86 -10.18 16 24 C 0.04 0.59 8.68 72.30 0.63 1.21 16 25 H 0.07 0.95 6.34 -2.38 -0.02 0.93 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.81 5.54 -2.39 -0.01 1.80 16 29 H 0.06 0.89 6.54 -2.39 -0.02 0.88 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.91 5.32 -2.39 -0.01 0.90 16 32 H 0.06 1.08 4.78 -2.39 -0.01 1.06 16 33 H 0.09 1.74 5.94 -2.39 -0.01 1.73 16 34 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 38 H 0.13 3.58 7.89 -2.91 -0.02 3.56 16 39 H 0.12 1.79 6.19 -2.39 -0.01 1.78 16 40 H 0.09 1.37 5.71 -2.39 -0.01 1.36 16 41 H 0.10 1.32 7.11 -2.39 -0.02 1.30 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.43 6.26 -2.39 -0.01 1.42 16 Total: -1.00 -70.11 332.09 2.09 -68.01 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 1.03 Total: 25.39 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 4.90 Total: -42.63 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -3.79 Total: -71.05 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -2.08 Total: -24.58 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -70.11 2.09 -68.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295449478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.120 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds