Wall clock time and date at job start Tue Mar 31 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46999 * 2 1 4 4 N 1.46503 * 109.47173 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99511 * 264.76854 * 4 3 2 6 6 H 1.08001 * 120.00142 * 138.85343 * 5 4 3 7 7 C 1.38948 * 120.00005 * 318.85038 * 5 4 3 8 8 N 1.31415 * 120.00254 * 341.83241 * 7 5 4 9 9 Si 1.86805 * 119.99985 * 161.83137 * 7 5 4 10 10 H 1.48498 * 109.47258 * 89.99820 * 9 7 5 11 11 H 1.48500 * 109.46901 * 210.00112 * 9 7 5 12 12 H 1.48503 * 109.46911 * 329.99707 * 9 7 5 13 13 C 1.34773 * 120.00221 * 84.76159 * 4 3 2 14 14 O 1.21290 * 119.99894 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99947 * 0.02562 * 13 4 3 16 16 C 1.53003 * 109.46800 * 179.97438 * 15 13 4 17 17 C 1.53002 * 109.47147 * 179.97438 * 16 15 13 18 18 O 1.42895 * 109.47435 * 179.97438 * 17 16 15 19 19 C 1.35898 * 117.00212 * 180.02562 * 18 17 16 20 20 C 1.38729 * 120.05600 * 180.02562 * 19 18 17 21 21 C 1.38144 * 119.94376 * 179.97438 * 20 19 18 22 22 C 1.38263 * 120.05604 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11538 * 359.95977 * 22 21 20 24 24 C 1.38152 * 120.05028 * 0.04346 * 23 22 21 25 25 H 1.08996 * 109.47304 * 59.99976 * 1 2 3 26 26 H 1.09005 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46977 * 299.99868 * 1 2 3 28 28 H 1.09004 * 109.46920 * 239.99777 * 2 1 3 29 29 H 1.09005 * 109.47461 * 119.99897 * 2 1 3 30 30 H 1.08992 * 109.47204 * 59.99718 * 3 2 1 31 31 H 1.09003 * 109.46509 * 299.99909 * 3 2 1 32 32 H 0.96991 * 120.00178 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47161 * 59.99688 * 15 13 4 34 34 H 1.08996 * 109.47025 * 299.99024 * 15 13 4 35 35 H 1.08997 * 109.47370 * 59.99998 * 16 15 13 36 36 H 1.09004 * 109.47042 * 299.99450 * 16 15 13 37 37 H 1.08997 * 109.46906 * 59.99813 * 17 16 15 38 38 H 1.08997 * 109.46745 * 300.00124 * 17 16 15 39 39 H 1.08000 * 120.02888 * 359.69893 * 20 19 18 40 40 H 1.07998 * 119.97388 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.94478 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97575 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.02550 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5507 1.1815 6 1 5.0709 0.9484 1.3523 7 6 3.7538 2.4352 2.1599 8 7 2.9283 3.4080 1.8449 9 14 4.3398 2.2416 3.9231 10 1 5.5844 3.0273 4.1202 11 1 3.2904 2.7356 4.8504 12 1 4.6102 0.8080 4.2002 13 6 4.1784 1.3362 -1.1632 14 8 5.3913 1.3358 -1.1636 15 6 3.4244 1.2178 -2.4626 16 6 4.4183 1.1123 -3.6211 17 6 3.6528 0.9915 -4.9404 18 8 4.5810 0.8936 -6.0224 19 6 4.0611 0.7798 -7.2729 20 6 4.9048 0.6799 -8.3696 21 6 4.3738 0.5638 -9.6397 22 6 3.0029 0.5475 -9.8183 23 6 2.1598 0.6465 -8.7268 24 6 2.6859 0.7629 -7.4547 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 2.6229 4.0252 2.5280 33 1 2.7980 2.0990 -2.6008 34 1 2.7976 0.3264 -2.4390 35 1 5.0450 0.2313 -3.4831 36 1 5.0449 2.0040 -3.6446 37 1 3.0258 1.8723 -5.0786 38 1 3.0266 0.0997 -4.9166 39 1 5.9757 0.6975 -8.2311 40 1 5.0301 0.4856 -10.4938 41 1 2.5897 0.4570 -10.8120 42 1 1.0894 0.6331 -8.8688 43 1 2.0271 0.8406 -6.6025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298999274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:30 Heat of formation + Delta-G solvation = -62.387507 kcal Electronic energy + Delta-G solvation = -22597.203896 eV Core-core repulsion = 19221.342610 eV Total energy + Delta-G solvation = -3375.861286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15292 -38.68931 -37.50879 -35.34099 -33.49602 -32.64025 -31.18750 -31.10926 -29.90372 -27.28848 -25.73465 -24.42065 -23.00827 -22.29301 -21.22288 -20.88796 -18.89150 -18.10355 -16.86185 -16.33210 -16.25087 -15.98515 -15.54326 -14.93163 -14.56928 -14.46230 -14.34291 -13.78069 -13.60465 -13.38241 -13.30695 -12.80427 -12.53080 -12.13057 -11.93933 -11.70212 -11.57124 -11.44853 -11.39079 -11.27840 -11.04733 -10.96714 -10.74049 -10.61101 -10.44927 -10.33188 -10.22853 -9.92301 -9.16314 -8.91321 -8.39380 -8.30105 -7.40456 -6.31408 -3.99667 1.18167 1.31798 3.14930 3.18083 3.26268 3.31404 3.65167 3.93114 4.17223 4.66575 4.72526 4.83229 4.96513 4.99393 5.05947 5.12611 5.22918 5.33022 5.34591 5.46471 5.53145 5.61236 5.68924 5.75123 5.79212 5.85541 5.96147 6.09970 6.18342 6.25798 6.27365 6.33680 6.36676 6.41595 6.46714 6.57448 6.59822 6.68672 6.89669 7.22698 7.40223 7.59246 8.31181 8.53029 9.21196 9.41200 10.03585 10.73838 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.002886 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.491229 B = 9700.892989 C =10418.738993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.109 3.891 4 N -0.443 5.443 5 C -0.309 4.309 6 H 0.087 0.913 7 C 0.038 3.962 8 N -0.872 5.872 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.463 3.537 14 O -0.579 6.579 15 C -0.132 4.132 16 C -0.099 4.099 17 C 0.060 3.940 18 O -0.312 6.312 19 C 0.136 3.864 20 C -0.157 4.157 21 C -0.082 4.082 22 C -0.166 4.166 23 C -0.081 4.081 24 C -0.212 4.212 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 -5.240 -16.558 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.015 4.015 4 N -0.162 5.162 5 C -0.437 4.437 6 H 0.105 0.895 7 C -0.166 4.166 8 N -0.510 5.510 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.251 3.749 14 O -0.463 6.463 15 C -0.172 4.172 16 C -0.137 4.137 17 C -0.015 4.015 18 O -0.225 6.225 19 C 0.090 3.910 20 C -0.175 4.175 21 C -0.100 4.100 22 C -0.185 4.185 23 C -0.099 4.099 24 C -0.230 4.230 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.618 -5.064 -16.350 18.015 hybrid contribution -0.262 0.070 0.928 0.967 sum -5.880 -4.994 -15.422 17.244 Atomic orbital electron populations 1.21682 0.96365 1.00678 1.01563 1.22002 0.94856 0.99411 1.01733 1.21528 0.82355 0.94165 1.03466 1.43436 1.04381 1.63545 1.04856 1.19352 1.11908 1.21402 0.90992 0.89542 1.25415 0.97059 0.93570 1.00536 1.69922 1.33632 1.13498 1.33966 0.86100 0.78452 0.78873 0.82264 1.20274 1.20856 1.19413 1.20257 0.88064 0.81764 0.84809 1.90528 1.14162 1.54687 1.86895 1.21531 0.98706 1.02937 0.94076 1.21214 0.98194 1.04861 0.89402 1.22977 0.91965 1.01015 0.85508 1.86107 1.36533 1.87275 1.12620 1.19125 0.91932 0.94780 0.85150 1.20496 0.99949 1.06506 0.90590 1.20953 0.95280 0.97674 0.96134 1.21032 0.93609 1.05027 0.98806 1.20955 0.99745 0.97224 0.91968 1.21343 0.94102 1.08729 0.98850 0.93188 0.93456 0.92731 0.93159 0.91684 0.87841 0.93426 0.92317 0.89997 0.90258 0.90381 0.90240 0.92005 0.92077 0.85205 0.85553 0.86138 0.85929 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.14 -2.45 6.17 -26.73 -0.16 -2.62 16 3 C 0.11 2.29 4.69 -4.04 -0.02 2.27 16 4 N -0.44 -11.08 2.50 -114.81 -0.29 -11.37 16 5 C -0.31 -8.54 8.84 -14.93 -0.13 -8.67 16 6 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 7 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 8 N -0.87 -23.50 11.61 55.50 0.64 -22.86 16 9 Si 0.92 20.64 29.59 -169.99 -5.03 15.61 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.46 11.19 7.59 -10.99 -0.08 11.10 16 14 O -0.58 -16.21 15.89 5.55 0.09 -16.12 16 15 C -0.13 -2.33 4.31 -27.88 -0.12 -2.45 16 16 C -0.10 -1.63 4.87 -26.73 -0.13 -1.76 16 17 C 0.06 0.80 4.74 37.16 0.18 0.98 16 18 O -0.31 -4.57 10.14 -19.42 -0.20 -4.76 16 19 C 0.14 1.77 6.69 -39.22 -0.26 1.50 16 20 C -0.16 -1.80 9.99 -39.43 -0.39 -2.20 16 21 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 22 C -0.17 -1.52 10.04 -39.56 -0.40 -1.91 16 23 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 24 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.82 6.60 -51.93 -0.34 0.48 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 31 H 0.05 0.91 6.66 -51.93 -0.35 0.57 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.08 1.34 7.41 -51.93 -0.38 0.95 16 34 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 35 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 36 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 37 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 38 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.30 6.30 -52.49 -0.33 0.96 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -31.67 354.68 -8.44 -40.11 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.61 Total: 3.62 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -2.40 Total: -9.58 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.36 Total: -34.23 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.11 Total: -20.88 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.67 -8.44 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298999274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.276 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds