Wall clock time and date at job start Tue Mar 31 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46999 * 2 1 4 4 N 1.46503 * 109.47173 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99511 * 264.76854 * 4 3 2 6 6 H 1.08001 * 120.00142 * 138.85343 * 5 4 3 7 7 C 1.38948 * 120.00005 * 318.85038 * 5 4 3 8 8 N 1.31415 * 120.00254 * 341.83241 * 7 5 4 9 9 Si 1.86805 * 119.99985 * 161.83137 * 7 5 4 10 10 H 1.48498 * 109.47258 * 89.99820 * 9 7 5 11 11 H 1.48500 * 109.46901 * 210.00112 * 9 7 5 12 12 H 1.48503 * 109.46911 * 329.99707 * 9 7 5 13 13 C 1.34773 * 120.00221 * 84.76159 * 4 3 2 14 14 O 1.21290 * 119.99894 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99947 * 0.02562 * 13 4 3 16 16 C 1.53003 * 109.46800 * 179.97438 * 15 13 4 17 17 C 1.53002 * 109.47147 * 179.97438 * 16 15 13 18 18 O 1.42895 * 109.47435 * 179.97438 * 17 16 15 19 19 C 1.35898 * 117.00212 * 180.02562 * 18 17 16 20 20 C 1.38729 * 120.05600 * 180.02562 * 19 18 17 21 21 C 1.38144 * 119.94376 * 179.97438 * 20 19 18 22 22 C 1.38263 * 120.05604 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11538 * 359.95977 * 22 21 20 24 24 C 1.38152 * 120.05028 * 0.04346 * 23 22 21 25 25 H 1.08996 * 109.47304 * 59.99976 * 1 2 3 26 26 H 1.09005 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46977 * 299.99868 * 1 2 3 28 28 H 1.09004 * 109.46920 * 239.99777 * 2 1 3 29 29 H 1.09005 * 109.47461 * 119.99897 * 2 1 3 30 30 H 1.08992 * 109.47204 * 59.99718 * 3 2 1 31 31 H 1.09003 * 109.46509 * 299.99909 * 3 2 1 32 32 H 0.96991 * 120.00178 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47161 * 59.99688 * 15 13 4 34 34 H 1.08996 * 109.47025 * 299.99024 * 15 13 4 35 35 H 1.08997 * 109.47370 * 59.99998 * 16 15 13 36 36 H 1.09004 * 109.47042 * 299.99450 * 16 15 13 37 37 H 1.08997 * 109.46906 * 59.99813 * 17 16 15 38 38 H 1.08997 * 109.46745 * 300.00124 * 17 16 15 39 39 H 1.08000 * 120.02888 * 359.69893 * 20 19 18 40 40 H 1.07998 * 119.97388 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.94478 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97575 * 180.02562 * 23 22 21 43 43 H 1.07996 * 120.02550 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5507 1.1815 6 1 5.0709 0.9484 1.3523 7 6 3.7538 2.4352 2.1599 8 7 2.9283 3.4080 1.8449 9 14 4.3398 2.2416 3.9231 10 1 5.5844 3.0273 4.1202 11 1 3.2904 2.7356 4.8504 12 1 4.6102 0.8080 4.2002 13 6 4.1784 1.3362 -1.1632 14 8 5.3913 1.3358 -1.1636 15 6 3.4244 1.2178 -2.4626 16 6 4.4183 1.1123 -3.6211 17 6 3.6528 0.9915 -4.9404 18 8 4.5810 0.8936 -6.0224 19 6 4.0611 0.7798 -7.2729 20 6 4.9048 0.6799 -8.3696 21 6 4.3738 0.5638 -9.6397 22 6 3.0029 0.5475 -9.8183 23 6 2.1598 0.6465 -8.7268 24 6 2.6859 0.7629 -7.4547 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 2.6229 4.0252 2.5280 33 1 2.7980 2.0990 -2.6008 34 1 2.7976 0.3264 -2.4390 35 1 5.0450 0.2313 -3.4831 36 1 5.0449 2.0040 -3.6446 37 1 3.0258 1.8723 -5.0786 38 1 3.0266 0.0997 -4.9166 39 1 5.9757 0.6975 -8.2311 40 1 5.0301 0.4856 -10.4938 41 1 2.5897 0.4570 -10.8120 42 1 1.0894 0.6331 -8.8688 43 1 2.0271 0.8406 -6.6025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298999274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:29 Heat of formation + Delta-G solvation = -79.869116 kcal Electronic energy + Delta-G solvation = -22597.961955 eV Core-core repulsion = 19221.342610 eV Total energy + Delta-G solvation = -3376.619345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06747 -40.48774 -38.41293 -37.15552 -34.98533 -34.26059 -32.96319 -31.90313 -30.77550 -28.72897 -27.29316 -26.08752 -24.05674 -23.20235 -22.47252 -22.16388 -20.55815 -19.12253 -18.77595 -17.82877 -17.39804 -17.04436 -16.75984 -16.49330 -16.02278 -16.00687 -15.36225 -15.27797 -14.71459 -14.70252 -14.30722 -14.02884 -13.98041 -13.44265 -13.38379 -13.12983 -13.06992 -12.94682 -12.62310 -12.49077 -12.40962 -12.31940 -12.16750 -12.03966 -11.96071 -11.64684 -11.62278 -11.42113 -10.87750 -10.35868 -9.92151 -9.37581 -9.14332 -8.34185 -6.10458 0.42427 0.52403 1.36369 1.39496 1.51778 2.06358 2.14625 2.32317 2.88175 3.00646 3.13781 3.79049 3.90521 3.95828 4.02478 4.11237 4.17421 4.27642 4.30512 4.34584 4.42398 4.45699 4.53629 4.59809 4.62603 4.68936 4.78006 4.85733 5.00662 5.07630 5.12273 5.18167 5.24550 5.32491 5.41618 5.42710 5.47455 5.51515 5.61570 5.62961 5.91598 6.24316 6.49760 6.56586 7.19684 7.48255 8.09175 8.69351 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.002886 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.491229 B = 9700.892989 C =10418.738993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.456 5.456 5 C -0.343 4.343 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.890 5.890 9 Si 0.978 3.022 10 H -0.280 1.280 11 H -0.266 1.266 12 H -0.267 1.267 13 C 0.445 3.555 14 O -0.632 6.632 15 C -0.116 4.116 16 C -0.092 4.092 17 C 0.070 3.930 18 O -0.338 6.338 19 C 0.105 3.895 20 C -0.176 4.176 21 C -0.084 4.084 22 C -0.165 4.165 23 C -0.085 4.085 24 C -0.221 4.221 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.273 0.727 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 -5.774 -18.216 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.175 5.175 5 C -0.471 4.471 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.528 5.528 9 Si 0.802 3.198 10 H -0.206 1.206 11 H -0.190 1.190 12 H -0.192 1.192 13 C 0.235 3.765 14 O -0.519 6.519 15 C -0.155 4.155 16 C -0.130 4.130 17 C -0.005 4.005 18 O -0.253 6.253 19 C 0.060 3.940 20 C -0.195 4.195 21 C -0.101 4.101 22 C -0.183 4.183 23 C -0.103 4.103 24 C -0.239 4.239 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.167 0.833 42 H 0.167 0.833 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.321 -5.599 -18.018 20.622 hybrid contribution 0.588 0.258 1.355 1.499 sum -7.734 -5.342 -16.663 19.131 Atomic orbital electron populations 1.21635 0.93233 1.02398 1.02255 1.21900 0.97428 0.96508 1.01325 1.21649 0.79949 0.96649 1.03131 1.43754 1.06047 1.63167 1.04489 1.19304 1.12307 1.22334 0.93150 0.92432 1.26125 0.96992 0.92847 1.03844 1.69980 1.33920 1.13628 1.35236 0.85184 0.78114 0.78800 0.77734 1.20604 1.19023 1.19154 1.21351 0.87960 0.80485 0.86691 1.90484 1.16682 1.56838 1.87936 1.21427 0.98458 1.05215 0.90433 1.21058 0.97872 1.02733 0.91323 1.22828 0.91269 1.02823 0.83585 1.86041 1.37525 1.88096 1.13619 1.19425 0.93149 0.96885 0.84558 1.20729 1.00060 1.07332 0.91389 1.21299 0.96214 0.96634 0.95989 1.21454 0.93372 1.03340 1.00097 1.21337 1.01299 0.96241 0.91405 1.21554 0.93430 1.08760 1.00166 0.91222 0.91224 0.93356 0.91816 0.93908 0.90419 0.91342 0.91765 0.87957 0.87137 0.92275 0.92867 0.90346 0.89884 0.85467 0.83038 0.83311 0.83335 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.91 71.98 0.71 -2.70 16 2 C -0.13 -4.42 6.17 30.59 0.19 -4.23 16 3 C 0.11 4.54 4.69 86.38 0.41 4.95 16 4 N -0.46 -23.35 2.50 -635.54 -1.59 -24.94 16 5 C -0.34 -19.71 8.84 84.04 0.74 -18.97 16 6 H 0.06 3.56 7.82 -2.91 -0.02 3.53 16 7 C 0.00 0.24 4.95 84.93 0.42 0.67 16 8 N -0.89 -48.34 11.61 21.66 0.25 -48.09 16 9 Si 0.98 42.92 29.59 68.60 2.03 44.95 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.44 22.09 7.59 87.66 0.67 22.75 16 14 O -0.63 -37.28 15.89 -3.06 -0.05 -37.33 16 15 C -0.12 -3.98 4.31 29.85 0.13 -3.85 16 16 C -0.09 -3.06 4.87 30.60 0.15 -2.92 16 17 C 0.07 1.77 4.74 71.98 0.34 2.11 16 18 O -0.34 -9.96 10.14 -92.40 -0.94 -10.89 16 19 C 0.10 2.66 6.69 22.51 0.15 2.81 16 20 C -0.18 -3.98 9.99 22.36 0.22 -3.75 16 21 C -0.08 -1.41 10.04 22.25 0.22 -1.19 16 22 C -0.16 -2.48 10.04 22.28 0.22 -2.26 16 23 C -0.08 -1.39 10.04 22.26 0.22 -1.16 16 24 C -0.22 -4.54 9.04 22.37 0.20 -4.34 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.93 6.60 -2.39 -0.02 1.92 16 29 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.08 3.65 5.76 -2.39 -0.01 3.64 16 31 H 0.07 2.50 6.66 -2.39 -0.02 2.48 16 32 H 0.27 13.82 8.31 -92.72 -0.77 13.05 16 33 H 0.10 3.13 7.41 -2.39 -0.02 3.11 16 34 H 0.11 3.12 6.54 -2.39 -0.02 3.10 16 35 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 36 H 0.05 2.02 8.10 -2.39 -0.02 2.01 16 37 H 0.08 1.72 7.66 -2.39 -0.02 1.70 16 38 H 0.08 1.74 7.66 -2.39 -0.02 1.72 16 39 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.14 2.43 6.30 -2.91 -0.02 2.42 16 Total: -1.00 -72.90 354.68 5.69 -67.21 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.98 Total: 21.19 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 5.00 Total: -12.08 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.34 Total: -73.03 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.99 Total: -48.23 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -72.90 5.69 -67.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298999274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.664 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds