Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 N 1.46501 * 109.46896 * 179.97438 * 3 2 1 5 5 C 1.37104 * 120.00030 * 263.25016 * 4 3 2 6 6 H 1.07999 * 119.99802 * 188.09181 * 5 4 3 7 7 C 1.38944 * 119.99649 * 8.09715 * 5 4 3 8 8 N 1.31409 * 120.00642 * 26.09751 * 7 5 4 9 9 Si 1.86805 * 119.99691 * 206.09232 * 7 5 4 10 10 H 1.48505 * 109.47077 * 84.98571 * 9 7 5 11 11 H 1.48495 * 109.47286 * 204.98932 * 9 7 5 12 12 H 1.48498 * 109.47189 * 324.98902 * 9 7 5 13 13 C 1.34771 * 120.00025 * 83.25649 * 4 3 2 14 14 O 1.21293 * 120.00057 * 359.97438 * 13 4 3 15 15 C 1.50707 * 120.00191 * 179.97438 * 13 4 3 16 16 O 1.42897 * 109.46824 * 179.97438 * 15 13 4 17 17 C 1.35909 * 116.99778 * 179.97438 * 16 15 13 18 18 C 1.38737 * 120.05786 * 270.27920 * 17 16 15 19 19 C 1.50702 * 120.02592 * 359.97438 * 18 17 16 20 20 C 1.38137 * 119.94401 * 180.25309 * 18 17 16 21 21 C 1.38270 * 120.05181 * 359.44835 * 20 18 17 22 22 C 1.38261 * 120.11605 * 0.29793 * 21 20 18 23 23 C 1.38148 * 120.05495 * 359.97438 * 22 21 20 24 24 C 1.50701 * 120.02948 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.46844 * 299.99962 * 1 2 3 26 26 H 1.09001 * 109.47219 * 59.99744 * 1 2 3 27 27 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46694 * 240.00431 * 2 1 3 29 29 H 1.09002 * 109.46976 * 120.00746 * 2 1 3 30 30 H 1.09005 * 109.46955 * 60.00590 * 3 2 1 31 31 H 1.09002 * 109.47775 * 300.00257 * 3 2 1 32 32 H 0.96997 * 120.00197 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46993 * 59.99981 * 15 13 4 34 34 H 1.08991 * 109.46997 * 299.99541 * 15 13 4 35 35 H 1.09000 * 109.47065 * 270.25082 * 19 18 17 36 36 H 1.09006 * 109.47190 * 30.25547 * 19 18 17 37 37 H 1.09000 * 109.46663 * 150.25327 * 19 18 17 38 38 H 1.07997 * 119.97473 * 179.72547 * 20 18 17 39 39 H 1.08001 * 119.94014 * 180.28052 * 21 20 18 40 40 H 1.08001 * 119.97312 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47176 * 89.99630 * 24 23 22 42 42 H 1.08996 * 109.47018 * 210.00289 * 24 23 22 43 43 H 1.09000 * 109.46908 * 330.00122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5821 1.1800 6 1 5.2620 1.7133 1.1695 7 6 3.5052 1.5547 2.3886 8 7 2.3619 0.9136 2.4817 9 14 4.2097 2.4292 3.8814 10 1 3.8115 3.8596 3.8508 11 1 3.6867 1.7961 5.1186 12 1 5.6911 2.3273 3.8614 13 6 4.1794 1.3051 -1.1582 14 8 3.5734 1.1812 -2.2015 15 6 5.6864 1.3056 -1.1576 16 8 6.1632 1.1465 -2.4953 17 6 7.5106 1.1264 -2.6717 18 6 8.1995 2.3092 -2.8983 19 6 7.4542 3.6180 -2.9497 20 6 9.5683 2.2855 -3.0826 21 6 10.2534 1.0856 -3.0299 22 6 9.5700 -0.0939 -2.7990 23 6 8.2003 -0.0762 -2.6197 24 6 7.4560 -1.3621 -2.3675 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 1.8836 0.8948 3.3253 33 1 6.0498 0.4825 -0.5424 34 1 6.0493 2.2500 -0.7522 35 1 7.1367 3.8154 -3.9736 36 1 6.5791 3.5635 -2.3020 37 1 8.1077 4.4217 -2.6106 38 1 10.1044 3.2053 -3.2634 39 1 11.3242 1.0696 -3.1697 40 1 10.1074 -1.0298 -2.7579 41 1 7.4106 -1.5513 -1.2950 42 1 6.4445 -1.2804 -2.7652 43 1 7.9747 -2.1847 -2.8598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299046465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = -50.135114 kcal Electronic energy + Delta-G solvation = -23792.421782 eV Core-core repulsion = 20417.091800 eV Total energy + Delta-G solvation = -3375.329982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03035 -38.57487 -36.77461 -35.03814 -33.44038 -32.41605 -31.52557 -30.96913 -28.27965 -26.52281 -26.50827 -25.51540 -24.02840 -21.61303 -20.73567 -20.55555 -19.20637 -17.49621 -17.18910 -16.28702 -15.86661 -15.22953 -14.69738 -14.42459 -14.33618 -14.01258 -13.83958 -13.49717 -13.09199 -13.03785 -12.87159 -12.82626 -12.52538 -12.24084 -12.04250 -11.74127 -11.69998 -11.41464 -11.39813 -11.09933 -11.01293 -10.91548 -10.79046 -10.50588 -10.33783 -10.32003 -9.53475 -9.40935 -8.89913 -8.48452 -8.37052 -8.30938 -7.84793 -6.48760 -3.94047 1.34194 1.43033 3.04875 3.16968 3.17245 3.52904 3.80531 3.96822 4.15114 4.86253 4.91678 4.93892 5.01301 5.05693 5.32965 5.50950 5.64620 5.67655 5.80251 5.83134 5.84557 5.92233 5.94164 5.97687 6.00486 6.15055 6.18691 6.28330 6.42060 6.44552 6.53190 6.57309 6.65735 6.74921 6.85812 6.92872 6.96400 7.03514 7.24946 7.41205 7.64889 7.74139 7.95239 8.35829 8.98707 9.45389 9.86983 10.49983 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.004733 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.461088 B = 5915.027544 C = 6638.594655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.142 3.858 4 N -0.436 5.436 5 C -0.348 4.348 6 H 0.098 0.902 7 C 0.043 3.957 8 N -0.845 5.845 9 Si 0.913 3.087 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.454 3.546 14 O -0.590 6.590 15 C 0.071 3.929 16 O -0.311 6.311 17 C 0.102 3.898 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.098 4.098 24 C -0.116 4.116 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.270 0.730 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 0.461 -4.085 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.019 3.981 4 N -0.155 5.155 5 C -0.475 4.475 6 H 0.115 0.885 7 C -0.163 4.163 8 N -0.482 5.482 9 Si 0.739 3.261 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.241 3.759 14 O -0.476 6.476 15 C -0.006 4.006 16 O -0.228 6.228 17 C 0.058 3.942 18 C -0.100 4.100 19 C -0.168 4.168 20 C -0.136 4.136 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.099 4.099 24 C -0.172 4.172 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.437 0.341 -4.555 10.485 hybrid contribution 0.582 0.386 1.133 1.331 sum 10.019 0.726 -3.422 10.612 Atomic orbital electron populations 1.21585 0.97490 0.99879 1.00423 1.21743 0.93839 0.98384 1.01917 1.21297 0.79418 0.96992 1.00394 1.43733 1.05633 1.61115 1.05009 1.19606 0.93502 1.51275 0.83112 0.88451 1.25141 0.96339 0.95996 0.98834 1.70148 1.16312 1.34983 1.26743 0.86179 0.79413 0.80016 0.80508 1.20145 1.20917 1.19523 1.19470 0.87783 0.84072 0.84528 1.90565 1.69547 1.55719 1.31720 1.22328 0.95020 1.01479 0.81767 1.86069 1.16128 1.93216 1.27341 1.18516 0.83867 0.91517 1.00322 1.20284 0.93940 0.95322 1.00458 1.20716 1.00167 0.93002 1.02947 1.20873 0.93121 0.98106 1.01542 1.21055 0.99619 0.92554 1.01123 1.20886 0.93080 0.98294 1.01356 1.20295 0.93911 0.95568 1.00092 1.20737 1.01064 0.93264 1.02142 0.92985 0.94351 0.94200 0.94564 0.88885 0.88616 0.94467 0.91930 0.91068 0.91378 0.90972 0.90917 0.91810 0.86001 0.86160 0.85987 0.91150 0.90333 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.91 37.16 0.37 -2.21 16 2 C -0.12 -2.75 5.74 -26.73 -0.15 -2.90 16 3 C 0.14 3.43 4.52 -4.04 -0.02 3.41 16 4 N -0.44 -10.90 2.64 -114.81 -0.30 -11.20 16 5 C -0.35 -8.51 9.25 -14.93 -0.14 -8.65 16 6 H 0.10 2.26 6.47 -52.49 -0.34 1.92 16 7 C 0.04 1.03 4.88 -17.47 -0.09 0.94 16 8 N -0.84 -20.47 8.72 55.50 0.48 -19.98 16 9 Si 0.91 18.59 29.63 -169.99 -5.04 13.55 16 10 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 13 C 0.45 11.29 7.66 -10.98 -0.08 11.21 16 14 O -0.59 -16.34 16.19 -14.36 -0.23 -16.57 16 15 C 0.07 1.49 4.55 36.01 0.16 1.65 16 16 O -0.31 -6.42 7.86 -39.36 -0.31 -6.73 16 17 C 0.10 1.78 5.67 -39.21 -0.22 1.56 16 18 C -0.10 -1.52 5.89 -104.47 -0.62 -2.14 16 19 C -0.11 -1.58 9.79 36.01 0.35 -1.23 16 20 C -0.12 -1.50 9.70 -39.61 -0.38 -1.89 16 21 C -0.13 -1.49 10.04 -39.56 -0.40 -1.88 16 22 C -0.12 -1.51 9.70 -39.61 -0.38 -1.90 16 23 C -0.10 -1.51 5.89 -104.47 -0.62 -2.13 16 24 C -0.12 -1.67 9.79 36.01 0.35 -1.32 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.09 2.29 6.42 -51.93 -0.33 1.96 16 30 H 0.10 2.37 5.81 -51.93 -0.30 2.06 16 31 H 0.04 0.91 7.64 -51.93 -0.40 0.51 16 32 H 0.27 6.21 8.31 -40.82 -0.34 5.88 16 33 H 0.07 1.44 8.01 -51.93 -0.42 1.03 16 34 H 0.07 1.34 6.88 -51.93 -0.36 0.98 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.17 6.30 -51.93 -0.33 0.84 16 37 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.31 7.53 -51.93 -0.39 0.92 16 43 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -28.52 351.91 -8.60 -37.12 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.64 Total: 5.98 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.86 Total: -7.47 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.18 Total: -31.19 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.54 Total: -23.30 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.04 Total: 13.55 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.52 -8.60 -37.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299046465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.015 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds