Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 N 1.46501 * 109.46896 * 179.97438 * 3 2 1 5 5 C 1.37104 * 120.00030 * 263.25016 * 4 3 2 6 6 H 1.07999 * 119.99802 * 188.09181 * 5 4 3 7 7 C 1.38944 * 119.99649 * 8.09715 * 5 4 3 8 8 N 1.31409 * 120.00642 * 26.09751 * 7 5 4 9 9 Si 1.86805 * 119.99691 * 206.09232 * 7 5 4 10 10 H 1.48505 * 109.47077 * 84.98571 * 9 7 5 11 11 H 1.48495 * 109.47286 * 204.98932 * 9 7 5 12 12 H 1.48498 * 109.47189 * 324.98902 * 9 7 5 13 13 C 1.34771 * 120.00025 * 83.25649 * 4 3 2 14 14 O 1.21293 * 120.00057 * 359.97438 * 13 4 3 15 15 C 1.50707 * 120.00191 * 179.97438 * 13 4 3 16 16 O 1.42897 * 109.46824 * 179.97438 * 15 13 4 17 17 C 1.35909 * 116.99778 * 179.97438 * 16 15 13 18 18 C 1.38737 * 120.05786 * 270.27920 * 17 16 15 19 19 C 1.50702 * 120.02592 * 359.97438 * 18 17 16 20 20 C 1.38137 * 119.94401 * 180.25309 * 18 17 16 21 21 C 1.38270 * 120.05181 * 359.44835 * 20 18 17 22 22 C 1.38261 * 120.11605 * 0.29793 * 21 20 18 23 23 C 1.38148 * 120.05495 * 359.97438 * 22 21 20 24 24 C 1.50701 * 120.02948 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.46844 * 299.99962 * 1 2 3 26 26 H 1.09001 * 109.47219 * 59.99744 * 1 2 3 27 27 H 1.08998 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46694 * 240.00431 * 2 1 3 29 29 H 1.09002 * 109.46976 * 120.00746 * 2 1 3 30 30 H 1.09005 * 109.46955 * 60.00590 * 3 2 1 31 31 H 1.09002 * 109.47775 * 300.00257 * 3 2 1 32 32 H 0.96997 * 120.00197 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46993 * 59.99981 * 15 13 4 34 34 H 1.08991 * 109.46997 * 299.99541 * 15 13 4 35 35 H 1.09000 * 109.47065 * 270.25082 * 19 18 17 36 36 H 1.09006 * 109.47190 * 30.25547 * 19 18 17 37 37 H 1.09000 * 109.46663 * 150.25327 * 19 18 17 38 38 H 1.07997 * 119.97473 * 179.72547 * 20 18 17 39 39 H 1.08001 * 119.94014 * 180.28052 * 21 20 18 40 40 H 1.08001 * 119.97312 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47176 * 89.99630 * 24 23 22 42 42 H 1.08996 * 109.47018 * 210.00289 * 24 23 22 43 43 H 1.09000 * 109.46908 * 330.00122 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5821 1.1800 6 1 5.2620 1.7133 1.1695 7 6 3.5052 1.5547 2.3886 8 7 2.3619 0.9136 2.4817 9 14 4.2097 2.4292 3.8814 10 1 3.8115 3.8596 3.8508 11 1 3.6867 1.7961 5.1186 12 1 5.6911 2.3273 3.8614 13 6 4.1794 1.3051 -1.1582 14 8 3.5734 1.1812 -2.2015 15 6 5.6864 1.3056 -1.1576 16 8 6.1632 1.1465 -2.4953 17 6 7.5106 1.1264 -2.6717 18 6 8.1995 2.3092 -2.8983 19 6 7.4542 3.6180 -2.9497 20 6 9.5683 2.2855 -3.0826 21 6 10.2534 1.0856 -3.0299 22 6 9.5700 -0.0939 -2.7990 23 6 8.2003 -0.0762 -2.6197 24 6 7.4560 -1.3621 -2.3675 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 1.8836 0.8948 3.3253 33 1 6.0498 0.4825 -0.5424 34 1 6.0493 2.2500 -0.7522 35 1 7.1367 3.8154 -3.9736 36 1 6.5791 3.5635 -2.3020 37 1 8.1077 4.4217 -2.6106 38 1 10.1044 3.2053 -3.2634 39 1 11.3242 1.0696 -3.1697 40 1 10.1074 -1.0298 -2.7579 41 1 7.4106 -1.5513 -1.2950 42 1 6.4445 -1.2804 -2.7652 43 1 7.9747 -2.1847 -2.8598 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299046465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = -63.102986 kcal Electronic energy + Delta-G solvation = -23792.984112 eV Core-core repulsion = 20417.091800 eV Total energy + Delta-G solvation = -3375.892311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32557 -40.36113 -38.17045 -36.96394 -34.52905 -34.22294 -33.44411 -32.09208 -29.85331 -27.89825 -27.54979 -27.28553 -25.81428 -22.79027 -22.33338 -21.82678 -21.12500 -19.09865 -18.82282 -17.66523 -17.53561 -16.58693 -16.21875 -16.07884 -16.01489 -15.58600 -15.30409 -14.89536 -14.60207 -14.54161 -14.09288 -13.93930 -13.86621 -13.67374 -13.60268 -13.43890 -13.17885 -12.87003 -12.69524 -12.55757 -12.45569 -12.29074 -12.23911 -12.12096 -12.11090 -12.02198 -11.39999 -10.87288 -10.79167 -10.33844 -9.78838 -9.53094 -9.45635 -8.34335 -5.87268 0.21809 0.38285 1.39635 1.49775 1.58597 1.91030 2.14347 2.38038 2.79876 3.04259 3.37148 3.82141 3.89653 4.09524 4.11184 4.20294 4.26114 4.39041 4.41561 4.46954 4.49142 4.56608 4.61817 4.66519 4.69551 4.73860 4.83379 4.86422 4.91384 5.05417 5.16012 5.19037 5.26342 5.31809 5.36599 5.51845 5.52504 5.53121 5.65128 5.73596 5.81852 5.90115 6.41782 6.62980 7.07819 7.52016 7.94305 8.64937 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.004733 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.461088 B = 5915.027544 C = 6638.594655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C 0.142 3.858 4 N -0.440 5.440 5 C -0.375 4.375 6 H 0.106 0.894 7 C 0.010 3.990 8 N -0.861 5.861 9 Si 0.982 3.018 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.263 1.263 13 C 0.436 3.564 14 O -0.630 6.630 15 C 0.089 3.911 16 O -0.333 6.333 17 C 0.057 3.943 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.112 4.112 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.013 0.987 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.026 0.974 32 H 0.275 0.725 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.696 0.826 -3.254 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.019 3.981 4 N -0.158 5.158 5 C -0.501 4.501 6 H 0.123 0.877 7 C -0.196 4.196 8 N -0.497 5.497 9 Si 0.806 3.194 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.187 1.187 13 C 0.225 3.775 14 O -0.519 6.519 15 C 0.012 3.988 16 O -0.250 6.250 17 C 0.013 3.987 18 C -0.115 4.115 19 C -0.166 4.166 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.134 4.134 23 C -0.116 4.116 24 C -0.168 4.168 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.076 0.700 -3.714 12.653 hybrid contribution -0.185 0.244 0.867 0.920 sum 11.891 0.944 -2.846 12.264 Atomic orbital electron populations 1.21505 0.94356 1.01502 1.01080 1.21591 0.96567 0.96841 0.99775 1.21297 0.79612 0.97730 0.99416 1.43982 1.06030 1.60292 1.05529 1.19945 0.94192 1.52749 0.83237 0.87663 1.25960 0.96736 0.95739 1.01124 1.70219 1.17067 1.34722 1.27712 0.85115 0.79030 0.78433 0.76822 1.20054 1.20574 1.18732 1.20133 0.89534 0.83885 0.83959 1.90510 1.70734 1.57735 1.32952 1.21988 0.92190 1.01726 0.82852 1.86054 1.18780 1.93511 1.26646 1.18937 0.82754 0.93446 1.03548 1.20500 0.95313 0.94752 1.00917 1.20709 0.99651 0.93850 1.02430 1.21260 0.91897 1.00023 1.00190 1.21555 1.01510 0.91563 0.98470 1.21258 0.91833 1.00258 1.00073 1.20493 0.95331 0.94896 1.00838 1.20695 0.99605 0.94376 1.02146 0.92468 0.93478 0.92114 0.96783 0.90646 0.89047 0.95586 0.91445 0.91019 0.90583 0.90934 0.93810 0.88952 0.82888 0.82195 0.83014 0.91303 0.93658 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.91 71.98 0.71 -4.07 16 2 C -0.11 -5.14 5.74 30.59 0.18 -4.97 16 3 C 0.14 7.15 4.52 86.38 0.39 7.54 16 4 N -0.44 -22.96 2.64 -635.53 -1.68 -24.64 16 5 C -0.37 -18.67 9.25 84.04 0.78 -17.89 16 6 H 0.11 4.95 6.47 -2.91 -0.02 4.93 16 7 C 0.01 0.45 4.88 84.93 0.41 0.87 16 8 N -0.86 -41.75 8.72 21.66 0.19 -41.56 16 9 Si 0.98 37.52 29.63 68.60 2.03 39.55 16 10 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.28 -10.52 7.11 99.48 0.71 -9.82 16 12 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 13 C 0.44 22.93 7.66 87.66 0.67 23.60 16 14 O -0.63 -37.15 16.19 15.97 0.26 -36.90 16 15 C 0.09 3.96 4.55 71.24 0.32 4.28 16 16 O -0.33 -14.56 7.86 -73.48 -0.58 -15.14 16 17 C 0.06 2.01 5.67 22.51 0.13 2.14 16 18 C -0.11 -3.42 5.89 -19.77 -0.12 -3.53 16 19 C -0.11 -3.10 9.79 71.24 0.70 -2.40 16 20 C -0.12 -2.58 9.70 22.25 0.22 -2.37 16 21 C -0.11 -2.21 10.04 22.28 0.22 -1.99 16 22 C -0.12 -2.64 9.70 22.25 0.22 -2.42 16 23 C -0.12 -3.50 5.89 -19.77 -0.12 -3.62 16 24 C -0.11 -3.28 9.79 71.24 0.70 -2.58 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.08 3.81 6.42 -2.39 -0.02 3.80 16 30 H 0.09 4.64 5.81 -2.38 -0.01 4.62 16 31 H 0.03 1.33 7.64 -2.39 -0.02 1.31 16 32 H 0.28 12.51 8.31 -92.71 -0.77 11.74 16 33 H 0.07 3.08 8.01 -2.39 -0.02 3.06 16 34 H 0.08 3.16 6.88 -2.39 -0.02 3.14 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.04 1.47 6.30 -2.38 -0.02 1.45 16 37 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.04 1.61 7.53 -2.39 -0.02 1.59 16 43 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 Total: -1.00 -64.56 351.91 6.62 -57.94 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.99 Total: 28.15 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.41 Total: -7.40 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -1.49 Total: -66.20 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.32 Total: -52.04 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -64.56 6.62 -57.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299046465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.164 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds