Wall clock time and date at job start Tue Mar 31 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47437 * 2 1 4 4 N 1.46504 * 109.47353 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00084 * 262.98079 * 4 3 2 6 6 H 1.08005 * 120.00159 * 142.20126 * 5 4 3 7 7 C 1.38951 * 119.99847 * 322.20907 * 5 4 3 8 8 N 1.31416 * 119.99669 * 157.13671 * 7 5 4 9 9 Si 1.86795 * 120.00218 * 337.13313 * 7 5 4 10 10 H 1.48501 * 109.47366 * 95.20526 * 9 7 5 11 11 H 1.48499 * 109.47411 * 215.20702 * 9 7 5 12 12 H 1.48509 * 109.47054 * 335.20689 * 9 7 5 13 13 C 1.34779 * 119.99973 * 82.97966 * 4 3 2 14 14 O 1.21291 * 119.99710 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99897 * 0.02562 * 13 4 3 16 16 C 1.53001 * 109.47075 * 180.02562 * 15 13 4 17 17 C 1.50694 * 109.47286 * 180.02562 * 16 15 13 18 18 C 1.38162 * 120.02815 * 264.99834 * 17 16 15 19 19 C 1.38244 * 120.05761 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11064 * 0.02562 * 19 18 17 21 21 C 1.38122 * 120.05903 * 0.02732 * 20 19 18 22 22 C 1.38716 * 120.02950 * 84.72073 * 17 16 15 23 23 O 1.35893 * 120.05393 * 359.97438 * 22 17 16 24 24 C 1.42903 * 116.99879 * 179.97438 * 23 22 17 25 25 H 1.08998 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 300.00375 * 1 2 3 27 27 H 1.08997 * 109.47071 * 59.99971 * 1 2 3 28 28 H 1.09004 * 109.47085 * 239.99625 * 2 1 3 29 29 H 1.09007 * 109.47185 * 119.99483 * 2 1 3 30 30 H 1.09004 * 109.47289 * 59.99750 * 3 2 1 31 31 H 1.09004 * 109.46964 * 299.99668 * 3 2 1 32 32 H 0.97002 * 119.99713 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46923 * 59.99967 * 15 13 4 34 34 H 1.08997 * 109.46952 * 299.99978 * 15 13 4 35 35 H 1.09000 * 109.47490 * 59.99593 * 16 15 13 36 36 H 1.09008 * 109.46412 * 299.99879 * 16 15 13 37 37 H 1.08008 * 119.96988 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.94394 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.96764 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.02999 * 179.97438 * 21 20 19 41 41 H 1.09008 * 109.47225 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.47267 * 300.00086 * 24 23 22 43 43 H 1.08998 * 109.47238 * 60.00811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5877 1.1792 6 1 5.1001 1.0307 1.3472 7 6 3.7135 2.4514 2.1579 8 7 4.0661 2.2815 3.4124 9 14 2.5718 3.8539 1.6903 10 1 1.1618 3.4304 1.8851 11 1 2.8577 5.0319 2.5480 12 1 2.7880 4.2144 0.2660 13 6 4.1795 1.2996 -1.1575 14 8 5.3924 1.2991 -1.1569 15 6 3.4265 1.1405 -2.4532 16 6 4.4212 0.9974 -3.6069 17 6 3.6683 0.8389 -4.9026 18 6 3.4118 -0.4230 -5.4033 19 6 2.7207 -0.5691 -6.5917 20 6 2.2848 0.5468 -7.2825 21 6 2.5397 1.8106 -6.7867 22 6 3.2271 1.9597 -5.5907 23 8 3.4728 3.2018 -5.0972 24 6 2.9896 4.3099 -5.8591 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8901 32 1 3.7331 2.8842 4.0956 33 1 2.8003 2.0170 -2.6195 34 1 2.7995 0.2504 -2.4021 35 1 5.0472 0.1207 -3.4404 36 1 5.0485 1.8874 -3.6581 37 1 3.7515 -1.2960 -4.8659 38 1 2.5208 -1.5564 -6.9812 39 1 1.7448 0.4300 -8.2104 40 1 2.1994 2.6817 -7.3268 41 1 3.2527 5.2399 -5.3550 42 1 3.4420 4.2940 -6.8507 43 1 1.9058 4.2413 -5.9531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299096706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:18 Heat of formation + Delta-G solvation = -50.499995 kcal Electronic energy + Delta-G solvation = -23685.163798 eV Core-core repulsion = 20309.817993 eV Total energy + Delta-G solvation = -3375.345805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28783 -38.79946 -37.42294 -35.50626 -33.76534 -32.74620 -31.46877 -30.21892 -29.54455 -27.36009 -25.98421 -25.37492 -23.39213 -22.14367 -21.37214 -20.98252 -18.59176 -17.99861 -16.92262 -16.35000 -16.22219 -15.78737 -15.54795 -15.21676 -14.62959 -14.45657 -14.28245 -13.75829 -13.62608 -13.24484 -12.91624 -12.90302 -12.74700 -12.30632 -12.08672 -11.98473 -11.74166 -11.63816 -11.56297 -11.26283 -11.18420 -10.98178 -10.80690 -10.62660 -10.56452 -10.39113 -9.95104 -9.76409 -8.99775 -8.89470 -8.41644 -8.09413 -7.65705 -6.33757 -3.88645 1.29185 1.41687 3.07341 3.25555 3.27265 3.32281 3.72236 3.84974 4.21037 4.49403 4.71890 4.77933 4.96043 4.99899 5.03987 5.09179 5.30047 5.34145 5.39706 5.40084 5.49373 5.58035 5.64846 5.67141 5.70488 5.85391 5.88092 6.03415 6.12095 6.16504 6.20006 6.29586 6.32670 6.34255 6.47162 6.58216 6.61172 6.72382 6.81111 6.82993 7.39146 7.63030 8.37300 8.60464 9.05799 9.40888 9.88703 10.78750 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.004610 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.065648 B = 6072.162048 C = 6394.066643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.093 3.907 4 N -0.469 5.469 5 C -0.313 4.313 6 H 0.104 0.896 7 C 0.061 3.939 8 N -0.866 5.866 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.468 3.532 14 O -0.566 6.566 15 C -0.128 4.128 16 C -0.055 4.055 17 C -0.104 4.104 18 C -0.080 4.080 19 C -0.157 4.157 20 C -0.091 4.091 21 C -0.210 4.210 22 C 0.129 3.871 23 O -0.308 6.308 24 C 0.027 3.973 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.272 0.728 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 -1.355 -19.224 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.031 4.031 4 N -0.191 5.191 5 C -0.440 4.440 6 H 0.121 0.879 7 C -0.144 4.144 8 N -0.502 5.502 9 Si 0.697 3.303 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.188 1.188 13 C 0.257 3.743 14 O -0.448 6.448 15 C -0.169 4.169 16 C -0.093 4.093 17 C -0.104 4.104 18 C -0.098 4.098 19 C -0.175 4.175 20 C -0.110 4.110 21 C -0.229 4.229 22 C 0.083 3.917 23 O -0.221 6.221 24 C -0.068 4.068 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.312 -1.214 -18.817 20.607 hybrid contribution -0.995 0.987 -0.325 1.439 sum -9.307 -0.227 -19.141 21.285 Atomic orbital electron populations 1.21726 0.96200 1.01237 1.01505 1.21922 0.94943 0.97959 1.02805 1.21852 0.83251 0.96554 1.01430 1.43770 1.03620 1.65257 1.06439 1.19027 1.10374 1.24823 0.89764 0.87887 1.25334 0.97205 0.97142 0.94741 1.69778 1.44301 1.36439 0.99704 0.87058 0.80239 0.83219 0.79768 1.20257 1.21410 1.18768 1.20300 0.88121 0.81433 0.84484 1.90543 1.14004 1.53701 1.86531 1.21629 0.98890 1.02805 0.93534 1.20159 0.96454 1.04073 0.88572 1.19493 1.02011 0.90704 0.98219 1.20973 0.97190 0.96132 0.95527 1.21021 1.01529 0.98575 0.96408 1.20858 0.98834 0.91942 0.99325 1.21190 1.05518 0.98708 0.97434 1.18929 0.95354 0.84904 0.92499 1.86178 1.74825 1.12243 1.48811 1.23049 0.99061 0.88226 0.96457 0.92887 0.92777 0.93104 0.92178 0.90781 0.90777 0.92375 0.91749 0.90226 0.90273 0.90499 0.90023 0.85261 0.86106 0.86202 0.85767 0.88236 0.92891 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.14 -2.39 6.13 -26.73 -0.16 -2.56 16 3 C 0.09 1.92 3.74 -4.04 -0.02 1.90 16 4 N -0.47 -11.65 2.18 -114.80 -0.25 -11.90 16 5 C -0.31 -9.05 9.35 -14.93 -0.14 -9.19 16 6 H 0.10 3.35 7.92 -52.48 -0.42 2.93 16 7 C 0.06 1.72 5.24 -17.47 -0.09 1.63 16 8 N -0.87 -25.44 13.96 55.50 0.77 -24.67 16 9 Si 0.87 21.04 25.11 -169.99 -4.27 16.77 16 10 H -0.28 -6.18 6.67 56.52 0.38 -5.80 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.26 -6.39 7.11 56.52 0.40 -5.98 16 13 C 0.47 11.22 7.57 -10.98 -0.08 11.14 16 14 O -0.57 -15.68 15.85 5.55 0.09 -15.59 16 15 C -0.13 -2.35 4.29 -27.88 -0.12 -2.47 16 16 C -0.05 -0.93 4.35 -27.89 -0.12 -1.05 16 17 C -0.10 -1.49 5.15 -104.48 -0.54 -2.03 16 18 C -0.08 -0.98 9.68 -39.61 -0.38 -1.37 16 19 C -0.16 -1.66 10.04 -39.56 -0.40 -2.06 16 20 C -0.09 -0.94 10.04 -39.61 -0.40 -1.33 16 21 C -0.21 -2.36 9.04 -39.43 -0.36 -2.72 16 22 C 0.13 1.77 6.66 -39.21 -0.26 1.51 16 23 O -0.31 -4.36 9.64 -19.40 -0.19 -4.55 16 24 C 0.03 0.26 9.81 101.05 0.99 1.25 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.97 6.39 -51.93 -0.33 0.64 16 29 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.07 1.63 3.72 -51.93 -0.19 1.44 16 31 H 0.06 1.06 6.74 -51.93 -0.35 0.71 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.42 7.42 -51.93 -0.39 1.03 16 34 H 0.08 1.29 6.35 -51.93 -0.33 0.96 16 35 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 36 H 0.08 1.53 7.66 -51.92 -0.40 1.14 16 37 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.12 1.11 6.30 -52.49 -0.33 0.78 16 41 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 43 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -33.44 347.66 -6.80 -40.24 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.49 Total: 3.52 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -1.71 Total: -9.05 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.52 Total: -36.57 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.10 Total: -20.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.27 Total: 16.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.44 -6.80 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299096706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.263 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds