Wall clock time and date at job start Tue Mar 31 2020 06:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47437 * 2 1 4 4 N 1.46504 * 109.47353 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00084 * 262.98079 * 4 3 2 6 6 H 1.08005 * 120.00159 * 142.20126 * 5 4 3 7 7 C 1.38951 * 119.99847 * 322.20907 * 5 4 3 8 8 N 1.31416 * 119.99669 * 157.13671 * 7 5 4 9 9 Si 1.86795 * 120.00218 * 337.13313 * 7 5 4 10 10 H 1.48501 * 109.47366 * 95.20526 * 9 7 5 11 11 H 1.48499 * 109.47411 * 215.20702 * 9 7 5 12 12 H 1.48509 * 109.47054 * 335.20689 * 9 7 5 13 13 C 1.34779 * 119.99973 * 82.97966 * 4 3 2 14 14 O 1.21291 * 119.99710 * 180.02562 * 13 4 3 15 15 C 1.50701 * 119.99897 * 0.02562 * 13 4 3 16 16 C 1.53001 * 109.47075 * 180.02562 * 15 13 4 17 17 C 1.50694 * 109.47286 * 180.02562 * 16 15 13 18 18 C 1.38162 * 120.02815 * 264.99834 * 17 16 15 19 19 C 1.38244 * 120.05761 * 179.97438 * 18 17 16 20 20 C 1.38284 * 120.11064 * 0.02562 * 19 18 17 21 21 C 1.38122 * 120.05903 * 0.02732 * 20 19 18 22 22 C 1.38716 * 120.02950 * 84.72073 * 17 16 15 23 23 O 1.35893 * 120.05393 * 359.97438 * 22 17 16 24 24 C 1.42903 * 116.99879 * 179.97438 * 23 22 17 25 25 H 1.08998 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 300.00375 * 1 2 3 27 27 H 1.08997 * 109.47071 * 59.99971 * 1 2 3 28 28 H 1.09004 * 109.47085 * 239.99625 * 2 1 3 29 29 H 1.09007 * 109.47185 * 119.99483 * 2 1 3 30 30 H 1.09004 * 109.47289 * 59.99750 * 3 2 1 31 31 H 1.09004 * 109.46964 * 299.99668 * 3 2 1 32 32 H 0.97002 * 119.99713 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46923 * 59.99967 * 15 13 4 34 34 H 1.08997 * 109.46952 * 299.99978 * 15 13 4 35 35 H 1.09000 * 109.47490 * 59.99593 * 16 15 13 36 36 H 1.09008 * 109.46412 * 299.99879 * 16 15 13 37 37 H 1.08008 * 119.96988 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.94394 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.96764 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.02999 * 179.97438 * 21 20 19 41 41 H 1.09008 * 109.47225 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.47267 * 300.00086 * 24 23 22 43 43 H 1.08998 * 109.47238 * 60.00811 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5877 1.1792 6 1 5.1001 1.0307 1.3472 7 6 3.7135 2.4514 2.1579 8 7 4.0661 2.2815 3.4124 9 14 2.5718 3.8539 1.6903 10 1 1.1618 3.4304 1.8851 11 1 2.8577 5.0319 2.5480 12 1 2.7880 4.2144 0.2660 13 6 4.1795 1.2996 -1.1575 14 8 5.3924 1.2991 -1.1569 15 6 3.4265 1.1405 -2.4532 16 6 4.4212 0.9974 -3.6069 17 6 3.6683 0.8389 -4.9026 18 6 3.4118 -0.4230 -5.4033 19 6 2.7207 -0.5691 -6.5917 20 6 2.2848 0.5468 -7.2825 21 6 2.5397 1.8106 -6.7867 22 6 3.2271 1.9597 -5.5907 23 8 3.4728 3.2018 -5.0972 24 6 2.9896 4.3099 -5.8591 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8901 32 1 3.7331 2.8842 4.0956 33 1 2.8003 2.0170 -2.6195 34 1 2.7995 0.2504 -2.4021 35 1 5.0472 0.1207 -3.4404 36 1 5.0485 1.8874 -3.6581 37 1 3.7515 -1.2960 -4.8659 38 1 2.5208 -1.5564 -6.9812 39 1 1.7448 0.4300 -8.2104 40 1 2.1994 2.6817 -7.3268 41 1 3.2527 5.2399 -5.3550 42 1 3.4420 4.2940 -6.8507 43 1 1.9058 4.2413 -5.9531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299096706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:17 Heat of formation + Delta-G solvation = -71.423934 kcal Electronic energy + Delta-G solvation = -23686.071128 eV Core-core repulsion = 20309.817993 eV Total energy + Delta-G solvation = -3376.253135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.26686 -40.59448 -38.31988 -37.33346 -35.13493 -34.50893 -33.29240 -31.13888 -30.70145 -28.18557 -27.63091 -26.96321 -24.94118 -22.98937 -22.77608 -22.08626 -20.46542 -18.97948 -18.84814 -17.94239 -17.40327 -17.25598 -16.60234 -16.30499 -16.24789 -15.82753 -15.44381 -15.25816 -14.88695 -14.67997 -14.44533 -14.26266 -13.93781 -13.71976 -13.58566 -13.31994 -13.13366 -12.86498 -12.77095 -12.49544 -12.45350 -12.34485 -12.11963 -11.98447 -11.88973 -11.86658 -11.60558 -11.38157 -11.04149 -10.40438 -9.73963 -9.70099 -9.03570 -8.53196 -6.13453 0.41420 0.55108 1.15456 1.28188 1.40951 1.94707 2.15788 2.46627 2.66965 2.86600 2.97192 3.72879 3.89659 3.95224 4.03479 4.12437 4.17822 4.25879 4.33334 4.34757 4.40877 4.43930 4.54648 4.57420 4.61363 4.62542 4.72207 4.73867 4.78528 4.96504 5.01499 5.10224 5.18593 5.28732 5.29554 5.45275 5.47097 5.56547 5.58740 5.67700 5.95452 6.03604 6.54059 6.57020 6.94595 7.31054 7.88834 8.64492 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.004610 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.065648 B = 6072.162048 C = 6394.066643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.086 3.914 4 N -0.478 5.478 5 C -0.333 4.333 6 H 0.042 0.958 7 C 0.016 3.984 8 N -0.909 5.909 9 Si 0.940 3.060 10 H -0.237 1.237 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.458 3.542 14 O -0.617 6.617 15 C -0.109 4.109 16 C -0.045 4.045 17 C -0.130 4.130 18 C -0.086 4.086 19 C -0.156 4.156 20 C -0.085 4.085 21 C -0.210 4.210 22 C 0.112 3.888 23 O -0.341 6.341 24 C 0.019 3.981 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.280 0.720 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 -1.004 -22.443 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C -0.036 4.036 4 N -0.200 5.200 5 C -0.461 4.461 6 H 0.060 0.940 7 C -0.186 4.186 8 N -0.546 5.546 9 Si 0.763 3.237 10 H -0.162 1.162 11 H -0.212 1.212 12 H -0.187 1.187 13 C 0.248 3.752 14 O -0.502 6.502 15 C -0.149 4.149 16 C -0.083 4.083 17 C -0.130 4.130 18 C -0.104 4.104 19 C -0.174 4.174 20 C -0.103 4.103 21 C -0.228 4.228 22 C 0.067 3.933 23 O -0.255 6.255 24 C -0.075 4.075 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.171 0.829 40 H 0.165 0.835 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.298 -0.878 -22.040 25.255 hybrid contribution 0.324 0.814 0.638 1.084 sum -11.974 -0.064 -21.402 24.524 Atomic orbital electron populations 1.21694 0.92790 1.02986 1.02489 1.21864 0.97774 0.95461 1.02026 1.22115 0.80240 0.99025 1.02234 1.43922 1.05552 1.65202 1.05299 1.18637 1.09689 1.25622 0.92189 0.93972 1.26079 0.99344 0.99089 0.94078 1.69882 1.46233 1.37582 1.00939 0.85956 0.79840 0.78770 0.79140 1.16195 1.21183 1.18707 1.21368 0.87949 0.79743 0.86098 1.90506 1.16585 1.55598 1.87519 1.21543 0.98723 1.04393 0.90238 1.19938 0.96084 1.02130 0.90124 1.19314 1.03858 0.92282 0.97586 1.21138 0.97368 0.95470 0.96428 1.21359 1.00378 1.00211 0.95437 1.21311 0.97682 0.91224 1.00044 1.21484 1.04639 1.00249 0.96471 1.19123 0.96126 0.84546 0.93517 1.86130 1.75608 1.13291 1.50453 1.23302 1.00151 0.87143 0.96942 0.90859 0.93064 0.90816 0.90982 0.93690 0.91976 0.89198 0.91059 0.88968 0.87601 0.91644 0.92958 0.84597 0.83393 0.82919 0.83455 0.87634 0.91372 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.13 -4.40 6.13 30.59 0.19 -4.21 16 3 C 0.09 3.42 3.74 86.38 0.32 3.74 16 4 N -0.48 -24.35 2.18 -635.51 -1.39 -25.74 16 5 C -0.33 -20.43 9.35 84.04 0.79 -19.65 16 6 H 0.04 3.02 7.92 -2.91 -0.02 3.00 16 7 C 0.02 0.95 5.24 84.93 0.45 1.39 16 8 N -0.91 -55.46 13.96 21.66 0.30 -55.16 16 9 Si 0.94 43.36 25.11 68.60 1.72 45.08 16 10 H -0.24 -9.50 6.67 99.48 0.66 -8.84 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.46 22.71 7.57 87.66 0.66 23.37 16 14 O -0.62 -36.46 15.85 -3.06 -0.05 -36.51 16 15 C -0.11 -3.94 4.29 29.85 0.13 -3.82 16 16 C -0.04 -1.56 4.35 29.85 0.13 -1.43 16 17 C -0.13 -3.61 5.15 -19.77 -0.10 -3.71 16 18 C -0.09 -1.93 9.68 22.25 0.22 -1.72 16 19 C -0.16 -2.71 10.04 22.28 0.22 -2.48 16 20 C -0.08 -1.36 10.04 22.25 0.22 -1.13 16 21 C -0.21 -4.00 9.04 22.37 0.20 -3.79 16 22 C 0.11 2.89 6.66 22.51 0.15 3.04 16 23 O -0.34 -9.35 9.64 -92.34 -0.89 -10.24 16 24 C 0.02 0.32 9.81 113.37 1.11 1.43 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 2.18 6.39 -2.38 -0.02 2.17 16 29 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.06 2.61 3.72 -2.38 -0.01 2.60 16 31 H 0.09 2.99 6.74 -2.38 -0.02 2.97 16 32 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 33 H 0.09 3.13 7.42 -2.39 -0.02 3.11 16 34 H 0.11 3.25 6.35 -2.39 -0.02 3.23 16 35 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16 36 H 0.05 2.08 7.66 -2.38 -0.02 2.06 16 37 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.15 2.02 6.30 -2.91 -0.02 2.00 16 41 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.07 0.91 7.65 -2.39 -0.02 0.90 16 43 H 0.07 0.93 7.67 -2.39 -0.02 0.91 16 Total: -1.00 -79.34 347.66 6.05 -73.29 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.95 Total: 20.95 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.40 Total: -11.67 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -1.09 Total: -80.90 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -0.94 Total: -46.75 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.72 Total: 45.08 kcal Total: -79.34 6.05 -73.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299096706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.865 kcal (2) G-P(sol) polarization free energy of solvation -79.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds