Wall clock time and date at job start Tue Mar 31 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 N 1.46501 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.37094 * 119.99978 * 264.74782 * 4 3 2 6 6 H 1.07996 * 120.00096 * 146.17293 * 5 4 3 7 7 C 1.38947 * 120.00154 * 326.16418 * 5 4 3 8 8 N 1.31422 * 120.00064 * 337.68626 * 7 5 4 9 9 Si 1.86802 * 120.00007 * 157.68202 * 7 5 4 10 10 H 1.48493 * 109.46935 * 90.00407 * 9 7 5 11 11 H 1.48502 * 109.46967 * 210.00398 * 9 7 5 12 12 H 1.48496 * 109.46985 * 329.99987 * 9 7 5 13 13 C 1.34780 * 119.99828 * 84.74952 * 4 3 2 14 14 O 1.21293 * 120.00037 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00267 * 359.97438 * 13 4 3 16 16 C 1.50701 * 109.47317 * 180.02562 * 15 13 4 17 17 C 1.38266 * 119.94399 * 89.99995 * 16 15 13 18 18 C 1.38141 * 120.05556 * 179.97438 * 17 16 15 19 19 C 1.38729 * 119.94534 * 0.02562 * 18 17 16 20 20 O 1.35898 * 120.05611 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99913 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47244 * 179.97438 * 21 20 19 23 23 C 1.38729 * 119.88565 * 0.27491 * 19 18 17 24 24 C 1.38142 * 119.94794 * 359.46859 * 23 19 18 25 25 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 300.00327 * 1 2 3 27 27 H 1.08996 * 109.46574 * 60.00104 * 1 2 3 28 28 H 1.09001 * 109.47101 * 239.99673 * 2 1 3 29 29 H 1.08996 * 109.46574 * 119.99896 * 2 1 3 30 30 H 1.08998 * 109.46852 * 59.99816 * 3 2 1 31 31 H 1.09002 * 109.46600 * 299.99553 * 3 2 1 32 32 H 0.96996 * 119.99996 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47235 * 60.00162 * 15 13 4 34 34 H 1.09002 * 109.47231 * 300.00511 * 15 13 4 35 35 H 1.08002 * 119.96972 * 0.02562 * 17 16 15 36 36 H 1.07999 * 120.02589 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47402 * 299.99978 * 21 20 19 38 38 H 1.09001 * 109.47282 * 59.99733 * 21 20 19 39 39 H 1.09001 * 109.47087 * 59.99751 * 22 21 20 40 40 H 1.09002 * 109.47374 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47094 * 299.99807 * 22 21 20 42 42 H 1.08003 * 120.02591 * 179.72597 * 23 19 18 43 43 H 1.08003 * 119.97577 * 180.23402 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5512 1.1832 6 1 5.1328 1.0399 1.3102 7 6 3.6715 2.3194 2.2183 8 7 2.8003 3.2687 1.9594 9 14 4.2125 2.0028 3.9780 10 1 5.4018 2.8361 4.2877 11 1 3.1074 2.3530 4.9062 12 1 4.5580 0.5676 4.1390 13 6 4.1795 1.3354 -1.1614 14 8 5.3924 1.3348 -1.1609 15 6 3.4265 1.2152 -2.4613 16 6 4.4063 1.1096 -3.6015 17 6 4.8548 -0.1317 -4.0133 18 6 5.7525 -0.2312 -5.0586 19 6 6.2044 0.9158 -5.6949 20 8 7.0871 0.8205 -6.7237 21 6 7.5095 2.0429 -7.3314 22 6 8.4951 1.7370 -8.4610 23 6 5.7576 2.1604 -5.2757 24 6 4.8558 2.2543 -4.2334 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9562 -0.8901 32 1 2.4380 3.8048 2.6821 33 1 2.7996 2.0959 -2.6009 34 1 2.8000 0.3235 -2.4373 35 1 4.5024 -1.0243 -3.5179 36 1 6.1029 -1.2010 -5.3796 37 1 6.6430 2.5658 -7.7364 38 1 7.9964 2.6705 -6.5850 39 1 8.0086 1.1092 -9.2076 40 1 8.8169 2.6694 -8.9249 41 1 9.3615 1.2144 -8.0557 42 1 6.1113 3.0551 -5.7665 43 1 4.5048 3.2229 -3.9092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299121376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:11 Heat of formation + Delta-G solvation = -56.815952 kcal Electronic energy + Delta-G solvation = -23054.547173 eV Core-core repulsion = 19678.927488 eV Total energy + Delta-G solvation = -3375.619685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.99475 -38.69910 -37.25492 -35.17235 -32.88838 -32.28040 -31.24028 -30.86406 -30.59698 -26.95026 -25.64465 -24.25612 -23.88269 -21.94172 -21.20172 -20.81080 -18.78913 -18.09739 -16.82599 -16.11596 -15.96390 -15.82554 -15.08059 -14.79454 -14.33062 -14.22214 -13.81967 -13.66404 -13.35391 -13.32491 -13.15560 -12.87372 -12.67632 -12.37966 -11.81756 -11.71305 -11.65746 -11.50879 -11.39811 -11.18578 -11.08928 -10.88489 -10.64566 -10.56919 -10.49874 -10.32884 -10.19111 -9.89777 -8.90832 -8.67797 -8.39249 -7.73608 -7.43893 -6.30320 -3.90473 1.66751 1.74876 3.18328 3.26453 3.27122 3.32955 3.95838 4.03031 4.21977 4.78469 4.82537 4.92654 5.05268 5.06981 5.14127 5.14973 5.31067 5.36352 5.56677 5.61238 5.61955 5.68928 5.71199 5.79231 5.83548 5.91575 6.01024 6.10816 6.12631 6.28232 6.35019 6.40594 6.49921 6.55806 6.62321 6.65027 6.94104 7.03560 7.05613 7.31466 7.60100 7.62644 8.28516 8.55804 9.23733 9.46382 10.07398 10.73262 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.003526 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.958806 B = 7939.594907 C = 8664.802893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.101 3.899 4 N -0.444 5.444 5 C -0.305 4.305 6 H 0.091 0.909 7 C 0.035 3.965 8 N -0.870 5.870 9 Si 0.915 3.085 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.460 3.540 14 O -0.575 6.575 15 C -0.098 4.098 16 C -0.077 4.077 17 C -0.069 4.069 18 C -0.151 4.151 19 C 0.115 3.885 20 O -0.321 6.321 21 C 0.054 3.946 22 C -0.151 4.151 23 C -0.206 4.206 24 C -0.068 4.068 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -2.981 -14.336 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.024 4.024 4 N -0.163 5.163 5 C -0.432 4.432 6 H 0.108 0.892 7 C -0.169 4.169 8 N -0.509 5.509 9 Si 0.741 3.259 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.248 3.752 14 O -0.458 6.458 15 C -0.138 4.138 16 C -0.078 4.078 17 C -0.087 4.087 18 C -0.170 4.170 19 C 0.070 3.930 20 O -0.235 6.235 21 C -0.021 4.021 22 C -0.208 4.208 23 C -0.225 4.225 24 C -0.086 4.086 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.140 0.860 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.007 -2.995 -14.294 14.604 hybrid contribution 0.054 0.296 0.985 1.030 sum 0.048 -2.699 -13.309 13.580 Atomic orbital electron populations 1.21678 0.96377 1.00648 1.01567 1.21984 0.94856 0.99421 1.01648 1.21671 0.82114 0.94433 1.04146 1.43521 1.04546 1.63345 1.04849 1.19433 1.06722 1.28242 0.88840 0.89158 1.25300 0.97397 0.93780 1.00412 1.69924 1.31145 1.17029 1.32799 0.86126 0.78262 0.79123 0.82373 1.20358 1.20839 1.19440 1.20197 0.88092 0.82448 0.84460 1.90541 1.14006 1.54497 1.86725 1.20696 0.97156 1.03449 0.92494 1.19393 0.99113 0.93035 0.96270 1.20771 0.95709 0.97389 0.94873 1.20285 1.01353 0.96665 0.98667 1.18887 0.91101 0.94154 0.88855 1.86018 1.58680 1.32921 1.45929 1.22717 0.97924 0.86037 0.95417 1.21765 0.99012 1.02666 0.97353 1.21097 1.03331 0.96063 1.01970 1.20781 0.95488 0.98270 0.94033 0.93485 0.92751 0.93154 0.93216 0.91758 0.86836 0.93492 0.92331 0.89449 0.89585 0.85731 0.85695 0.92250 0.92113 0.91686 0.90579 0.91584 0.86004 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.14 -2.49 6.17 -26.73 -0.16 -2.66 16 3 C 0.10 2.15 4.72 -4.04 -0.02 2.13 16 4 N -0.44 -11.17 2.56 -114.81 -0.29 -11.47 16 5 C -0.30 -8.47 8.98 -14.94 -0.13 -8.61 16 6 H 0.09 2.65 7.70 -52.49 -0.40 2.25 16 7 C 0.03 0.91 4.92 -17.46 -0.09 0.83 16 8 N -0.87 -23.30 11.33 55.50 0.63 -22.68 16 9 Si 0.91 20.66 29.61 -169.99 -5.03 15.63 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.46 11.26 7.59 -10.98 -0.08 11.18 16 14 O -0.57 -16.30 15.86 5.55 0.09 -16.21 16 15 C -0.10 -1.82 4.43 -29.03 -0.13 -1.95 16 16 C -0.08 -1.40 4.37 -104.60 -0.46 -1.86 16 17 C -0.07 -1.16 9.69 -39.61 -0.38 -1.54 16 18 C -0.15 -2.38 9.99 -39.44 -0.39 -2.77 16 19 C 0.11 1.80 6.69 -39.22 -0.26 1.53 16 20 O -0.32 -4.53 10.14 -19.42 -0.20 -4.73 16 21 C 0.05 0.57 5.46 37.16 0.20 0.77 16 22 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 23 C -0.21 -3.18 9.04 -39.44 -0.36 -3.53 16 24 C -0.07 -1.15 9.69 -39.61 -0.38 -1.54 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.83 6.59 -51.93 -0.34 0.49 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 31 H 0.05 0.91 6.66 -51.93 -0.35 0.57 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.09 1.51 7.36 -51.93 -0.38 1.13 16 34 H 0.09 1.41 6.48 -51.93 -0.34 1.08 16 35 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.06 0.55 7.67 -51.93 -0.40 0.16 16 38 H 0.06 0.62 7.65 -51.93 -0.40 0.23 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.12 1.56 6.30 -52.48 -0.33 1.23 16 43 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -32.12 353.97 -7.95 -40.07 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.58 Total: 4.59 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.90 Total: -10.54 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.34 Total: -34.14 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.11 Total: -20.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.12 -7.95 -40.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299121376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.750 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds