Wall clock time and date at job start Tue Mar 31 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 N 1.46501 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.37094 * 119.99978 * 264.74782 * 4 3 2 6 6 H 1.07996 * 120.00096 * 146.17293 * 5 4 3 7 7 C 1.38947 * 120.00154 * 326.16418 * 5 4 3 8 8 N 1.31422 * 120.00064 * 337.68626 * 7 5 4 9 9 Si 1.86802 * 120.00007 * 157.68202 * 7 5 4 10 10 H 1.48493 * 109.46935 * 90.00407 * 9 7 5 11 11 H 1.48502 * 109.46967 * 210.00398 * 9 7 5 12 12 H 1.48496 * 109.46985 * 329.99987 * 9 7 5 13 13 C 1.34780 * 119.99828 * 84.74952 * 4 3 2 14 14 O 1.21293 * 120.00037 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00267 * 359.97438 * 13 4 3 16 16 C 1.50701 * 109.47317 * 180.02562 * 15 13 4 17 17 C 1.38266 * 119.94399 * 89.99995 * 16 15 13 18 18 C 1.38141 * 120.05556 * 179.97438 * 17 16 15 19 19 C 1.38729 * 119.94534 * 0.02562 * 18 17 16 20 20 O 1.35898 * 120.05611 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99913 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47244 * 179.97438 * 21 20 19 23 23 C 1.38729 * 119.88565 * 0.27491 * 19 18 17 24 24 C 1.38142 * 119.94794 * 359.46859 * 23 19 18 25 25 H 1.08991 * 109.47241 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 300.00327 * 1 2 3 27 27 H 1.08996 * 109.46574 * 60.00104 * 1 2 3 28 28 H 1.09001 * 109.47101 * 239.99673 * 2 1 3 29 29 H 1.08996 * 109.46574 * 119.99896 * 2 1 3 30 30 H 1.08998 * 109.46852 * 59.99816 * 3 2 1 31 31 H 1.09002 * 109.46600 * 299.99553 * 3 2 1 32 32 H 0.96996 * 119.99996 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47235 * 60.00162 * 15 13 4 34 34 H 1.09002 * 109.47231 * 300.00511 * 15 13 4 35 35 H 1.08002 * 119.96972 * 0.02562 * 17 16 15 36 36 H 1.07999 * 120.02589 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47402 * 299.99978 * 21 20 19 38 38 H 1.09001 * 109.47282 * 59.99733 * 21 20 19 39 39 H 1.09001 * 109.47087 * 59.99751 * 22 21 20 40 40 H 1.09002 * 109.47374 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47094 * 299.99807 * 22 21 20 42 42 H 1.08003 * 120.02591 * 179.72597 * 23 19 18 43 43 H 1.08003 * 119.97577 * 180.23402 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5512 1.1832 6 1 5.1328 1.0399 1.3102 7 6 3.6715 2.3194 2.2183 8 7 2.8003 3.2687 1.9594 9 14 4.2125 2.0028 3.9780 10 1 5.4018 2.8361 4.2877 11 1 3.1074 2.3530 4.9062 12 1 4.5580 0.5676 4.1390 13 6 4.1795 1.3354 -1.1614 14 8 5.3924 1.3348 -1.1609 15 6 3.4265 1.2152 -2.4613 16 6 4.4063 1.1096 -3.6015 17 6 4.8548 -0.1317 -4.0133 18 6 5.7525 -0.2312 -5.0586 19 6 6.2044 0.9158 -5.6949 20 8 7.0871 0.8205 -6.7237 21 6 7.5095 2.0429 -7.3314 22 6 8.4951 1.7370 -8.4610 23 6 5.7576 2.1604 -5.2757 24 6 4.8558 2.2543 -4.2334 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9562 -0.8901 32 1 2.4380 3.8048 2.6821 33 1 2.7996 2.0959 -2.6009 34 1 2.8000 0.3235 -2.4373 35 1 4.5024 -1.0243 -3.5179 36 1 6.1029 -1.2010 -5.3796 37 1 6.6430 2.5658 -7.7364 38 1 7.9964 2.6705 -6.5850 39 1 8.0086 1.1092 -9.2076 40 1 8.8169 2.6694 -8.9249 41 1 9.3615 1.2144 -8.0557 42 1 6.1113 3.0551 -5.7665 43 1 4.5048 3.2229 -3.9092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299121376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:11 Heat of formation + Delta-G solvation = -74.507684 kcal Electronic energy + Delta-G solvation = -23055.314344 eV Core-core repulsion = 19678.927488 eV Total energy + Delta-G solvation = -3376.386856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21763 -40.38201 -38.52791 -37.01068 -34.59998 -33.41646 -32.95754 -32.13941 -31.73281 -28.50222 -27.21174 -25.95343 -24.91308 -23.13934 -22.55183 -22.15916 -20.54410 -19.20458 -18.77108 -17.80860 -17.06108 -17.01198 -16.68818 -16.49779 -15.76674 -15.73492 -15.34946 -15.16315 -14.57119 -14.49541 -14.39814 -14.15978 -13.94822 -13.42446 -13.37330 -13.25354 -13.02103 -12.80974 -12.72368 -12.65877 -12.51059 -12.41050 -12.14523 -12.04862 -11.94943 -11.66457 -11.58421 -11.46627 -10.85691 -10.32810 -9.91469 -9.41606 -9.00549 -8.32198 -6.00826 0.42857 0.47167 1.36214 1.40685 1.53120 2.09181 2.27676 2.30739 2.75538 3.02845 3.25682 3.83014 3.89158 3.97660 4.05992 4.14052 4.15929 4.26013 4.32769 4.36708 4.41866 4.46956 4.53882 4.65050 4.70399 4.76197 4.83269 4.92665 4.94872 5.03737 5.11374 5.18596 5.20467 5.31969 5.33899 5.40423 5.44351 5.50919 5.65135 5.73543 5.84094 6.23407 6.48637 6.57983 7.22345 7.52818 8.13343 8.69316 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.003526 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.958806 B = 7939.594907 C = 8664.802893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.456 5.456 5 C -0.340 4.340 6 H 0.060 0.940 7 C 0.004 3.996 8 N -0.886 5.886 9 Si 0.975 3.025 10 H -0.280 1.280 11 H -0.266 1.266 12 H -0.269 1.269 13 C 0.448 3.552 14 O -0.625 6.625 15 C -0.081 4.081 16 C -0.103 4.103 17 C -0.077 4.077 18 C -0.160 4.160 19 C 0.113 3.887 20 O -0.330 6.330 21 C 0.042 3.958 22 C -0.146 4.146 23 C -0.208 4.208 24 C -0.083 4.083 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.273 0.727 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.146 0.854 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 -3.157 -15.439 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.022 4.022 4 N -0.174 5.174 5 C -0.469 4.469 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.524 5.524 9 Si 0.799 3.201 10 H -0.206 1.206 11 H -0.190 1.190 12 H -0.194 1.194 13 C 0.238 3.762 14 O -0.512 6.512 15 C -0.121 4.121 16 C -0.104 4.104 17 C -0.095 4.095 18 C -0.178 4.178 19 C 0.067 3.933 20 O -0.245 6.245 21 C -0.032 4.032 22 C -0.203 4.203 23 C -0.226 4.226 24 C -0.101 4.101 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.164 0.836 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.927 -3.166 -15.408 15.757 hybrid contribution 0.399 0.403 1.249 1.372 sum -0.528 -2.762 -14.158 14.435 Atomic orbital electron populations 1.21631 0.93334 1.02370 1.02181 1.21885 0.97368 0.96641 1.01213 1.21775 0.79937 0.96805 1.03731 1.43804 1.06072 1.63021 1.04511 1.19344 1.06835 1.29613 0.91068 0.92203 1.25991 0.97253 0.93051 1.03535 1.69984 1.31345 1.17012 1.34083 0.85224 0.78152 0.78796 0.77917 1.20561 1.18993 1.19380 1.21150 0.87927 0.81094 0.86059 1.90491 1.16368 1.56599 1.87715 1.20569 0.97023 1.05158 0.89348 1.19478 1.00213 0.94000 0.96710 1.20968 0.95904 0.97441 0.95227 1.20551 1.01070 0.97769 0.98425 1.19060 0.90957 0.94195 0.89043 1.86025 1.58071 1.35041 1.45357 1.23069 0.99058 0.85054 0.96042 1.21795 0.98093 1.03992 0.96460 1.21338 1.02666 0.97127 1.01510 1.20967 0.96130 0.98255 0.94723 0.91215 0.93308 0.91402 0.91998 0.93881 0.89252 0.91678 0.91714 0.88024 0.87173 0.84624 0.83911 0.90921 0.92016 0.91434 0.88125 0.92037 0.83618 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.13 -4.57 6.17 30.60 0.19 -4.38 16 3 C 0.10 4.28 4.72 86.38 0.41 4.69 16 4 N -0.46 -23.48 2.56 -635.54 -1.63 -25.11 16 5 C -0.34 -19.63 8.98 84.04 0.75 -18.87 16 6 H 0.06 3.73 7.70 -2.91 -0.02 3.71 16 7 C 0.00 0.22 4.92 84.92 0.42 0.63 16 8 N -0.89 -47.72 11.33 21.66 0.25 -47.48 16 9 Si 0.98 42.79 29.61 68.60 2.03 44.82 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.45 22.40 7.59 87.66 0.66 23.06 16 14 O -0.63 -36.85 15.86 -3.07 -0.05 -36.90 16 15 C -0.08 -2.99 4.43 29.10 0.13 -2.86 16 16 C -0.10 -3.70 4.37 -19.85 -0.09 -3.79 16 17 C -0.08 -2.55 9.69 22.25 0.22 -2.33 16 18 C -0.16 -4.89 9.99 22.36 0.22 -4.67 16 19 C 0.11 3.41 6.69 22.50 0.15 3.56 16 20 O -0.33 -8.86 10.14 -92.41 -0.94 -9.79 16 21 C 0.04 0.80 5.46 71.98 0.39 1.20 16 22 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 23 C -0.21 -6.21 9.04 22.36 0.20 -6.01 16 24 C -0.08 -2.80 9.69 22.25 0.22 -2.58 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.96 6.59 -2.39 -0.02 1.95 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 4.27 5.34 -2.39 -0.01 4.26 16 31 H 0.06 2.47 6.66 -2.39 -0.02 2.45 16 32 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 33 H 0.10 3.40 7.36 -2.39 -0.02 3.38 16 34 H 0.11 3.44 6.48 -2.39 -0.02 3.43 16 35 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.07 1.19 7.67 -2.38 -0.02 1.17 16 38 H 0.06 1.16 7.65 -2.39 -0.02 1.14 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.15 3.49 6.30 -2.91 -0.02 3.47 16 43 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -71.54 353.97 5.98 -65.55 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.99 Total: 25.38 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 5.33 Total: -16.49 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.38 Total: -72.58 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.99 Total: -46.69 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -71.54 5.98 -65.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299121376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.955 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds