Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 N 1.46500 * 109.47408 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99947 * 270.00640 * 4 3 2 6 6 H 1.08005 * 119.99882 * 147.21126 * 5 4 3 7 7 C 1.38946 * 119.99879 * 327.20086 * 5 4 3 8 8 N 1.31415 * 119.99988 * 156.05013 * 7 5 4 9 9 Si 1.86801 * 120.00425 * 336.05058 * 7 5 4 10 10 H 1.48501 * 109.46900 * 95.40343 * 9 7 5 11 11 H 1.48495 * 109.47416 * 215.40619 * 9 7 5 12 12 H 1.48504 * 109.46874 * 335.41056 * 9 7 5 13 13 C 1.34777 * 119.99593 * 89.99861 * 4 3 2 14 14 O 1.21293 * 120.00137 * 5.34023 * 13 4 3 15 15 C 1.50699 * 119.99820 * 185.33408 * 13 4 3 16 16 H 1.09001 * 109.47183 * 312.81019 * 15 13 4 17 17 C 1.53006 * 109.46917 * 72.80368 * 15 13 4 18 18 O 1.42899 * 109.47219 * 192.80553 * 15 13 4 19 19 C 1.42902 * 114.00008 * 151.59384 * 18 15 13 20 20 C 1.50698 * 109.46956 * 175.45234 * 19 18 15 21 21 C 1.38234 * 120.00299 * 269.72594 * 20 19 18 22 22 C 1.38234 * 119.99750 * 179.76783 * 21 20 19 23 23 C 1.38235 * 120.00416 * 0.50812 * 22 21 20 24 24 C 1.38238 * 119.99696 * 359.74786 * 23 22 21 25 25 C 1.38237 * 119.99967 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.46808 * 60.00161 * 1 2 3 27 27 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47132 * 299.99819 * 1 2 3 29 29 H 1.09001 * 109.47012 * 240.00024 * 2 1 3 30 30 H 1.08996 * 109.47411 * 120.00275 * 2 1 3 31 31 H 1.09004 * 109.46689 * 59.99804 * 3 2 1 32 32 H 1.08996 * 109.47153 * 300.00433 * 3 2 1 33 33 H 0.96997 * 120.00392 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47220 * 294.97103 * 17 15 13 35 35 H 1.09002 * 109.46937 * 54.96938 * 17 15 13 36 36 H 1.09002 * 109.47067 * 174.96783 * 17 15 13 37 37 H 1.08993 * 109.46953 * 295.45921 * 19 18 15 38 38 H 1.08999 * 109.46960 * 55.45510 * 19 18 15 39 39 H 1.08003 * 119.99930 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.99638 * 180.23375 * 22 21 20 41 41 H 1.07998 * 120.00199 * 179.72319 * 23 22 21 42 42 H 1.07990 * 119.99971 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.99830 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.4426 1.1882 6 1 5.1410 0.9361 1.2631 7 6 3.6609 2.0945 2.2953 8 7 4.0226 1.7327 3.5058 9 14 2.4353 3.4850 2.0632 10 1 1.0540 2.9507 2.1716 11 1 2.6512 4.5152 3.1107 12 1 2.6264 4.0946 0.7225 13 6 4.1793 1.4424 -1.1664 14 8 3.5772 1.5399 -2.2147 15 6 5.6814 1.3211 -1.1686 16 1 6.1027 2.0102 -0.4366 17 6 6.0779 -0.1118 -0.8072 18 8 6.1832 1.6409 -2.4678 19 6 7.5072 2.1787 -2.4633 20 6 7.9750 2.3734 -3.8826 21 6 8.6451 1.3557 -4.5353 22 6 9.0700 1.5326 -5.8387 23 6 8.8340 2.7311 -6.4860 24 6 8.1686 3.7507 -5.8315 25 6 7.7386 3.5717 -4.5300 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6535 2.1880 4.2787 34 1 5.7733 -0.3257 0.2173 35 1 5.5842 -0.8075 -1.4857 36 1 7.1586 -0.2231 -0.8957 37 1 7.5080 3.1378 -1.9456 38 1 8.1778 1.4888 -1.9511 39 1 8.8331 0.4208 -4.0282 40 1 9.5902 0.7361 -6.3499 41 1 9.1699 2.8709 -7.5029 42 1 7.9846 4.6871 -6.3370 43 1 7.2191 4.3685 -4.0185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299122382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = -49.610490 kcal Electronic energy + Delta-G solvation = -23416.413720 eV Core-core repulsion = 20041.106487 eV Total energy + Delta-G solvation = -3375.307233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.46345 -38.99335 -37.09591 -35.17508 -33.11813 -32.20844 -31.66516 -30.88130 -30.17757 -26.09657 -25.96602 -25.00872 -22.82316 -22.54062 -21.25889 -21.14584 -19.00121 -17.44839 -17.03838 -16.33674 -15.89682 -15.48524 -15.23689 -14.95483 -14.51613 -14.18807 -14.09158 -13.63439 -13.43502 -13.37521 -12.97701 -12.73538 -12.66952 -12.36326 -12.10482 -11.85414 -11.70428 -11.64594 -11.36452 -11.08402 -10.97548 -10.92978 -10.77685 -10.54750 -10.41080 -10.05642 -9.72607 -9.32947 -9.11509 -8.89502 -8.81944 -8.39293 -7.86958 -6.55941 -4.09015 1.30257 1.42778 3.00756 3.18764 3.27320 3.56608 3.68858 4.03139 4.09559 4.63634 4.85319 4.88545 4.97888 5.07854 5.19071 5.35124 5.49037 5.52877 5.58645 5.61838 5.66237 5.68092 5.78031 5.86484 5.92925 5.99639 6.04237 6.06860 6.26764 6.27059 6.37240 6.40679 6.42961 6.45810 6.49587 6.65931 6.69284 6.74820 6.90311 7.00271 7.29620 7.57709 7.99765 8.19928 8.89991 9.32597 9.65824 10.54141 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.003917 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.074270 B = 7147.355702 C = 7469.800358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.104 3.896 4 N -0.462 5.462 5 C -0.355 4.355 6 H 0.112 0.888 7 C 0.069 3.931 8 N -0.854 5.854 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.262 1.262 13 C 0.483 3.517 14 O -0.580 6.580 15 C 0.085 3.915 16 H 0.087 0.913 17 C -0.166 4.166 18 O -0.356 6.356 19 C 0.097 3.903 20 C -0.079 4.079 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.121 4.121 24 C -0.125 4.125 25 C -0.097 4.097 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.276 0.724 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 0.308 -10.098 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.019 4.019 4 N -0.184 5.184 5 C -0.481 4.481 6 H 0.129 0.871 7 C -0.138 4.138 8 N -0.489 5.489 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.186 1.186 13 C 0.271 3.729 14 O -0.463 6.463 15 C 0.025 3.975 16 H 0.105 0.895 17 C -0.223 4.223 18 O -0.275 6.275 19 C 0.021 3.979 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.143 4.143 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.373 0.354 -10.558 12.338 hybrid contribution -0.479 0.756 0.487 1.019 sum 5.894 1.110 -10.071 11.722 Atomic orbital electron populations 1.21709 0.96335 1.01118 1.01387 1.21768 0.94825 0.97837 1.02551 1.21633 0.82243 0.96832 1.01172 1.43671 1.03932 1.65325 1.05450 1.19236 1.07532 1.35477 0.85874 0.87082 1.25251 0.97071 0.96840 0.94675 1.69785 1.43030 1.38151 0.97924 0.87021 0.80996 0.82908 0.78887 1.20023 1.21616 1.18649 1.19958 0.88471 0.80605 0.83828 1.90559 1.69928 1.53962 1.31839 1.21707 0.93510 0.97418 0.84881 0.89539 1.22188 1.00799 0.95821 1.03524 1.88070 1.28523 1.83159 1.27724 1.21354 0.85496 0.98274 0.92815 1.19681 0.98201 0.94300 0.95765 1.21083 0.97649 0.98242 0.94781 1.21109 1.00818 0.97569 0.94934 1.21142 0.99253 0.93775 0.99693 1.21128 0.99063 0.99211 0.94917 1.21128 0.98212 0.97344 0.94822 0.93007 0.92951 0.93013 0.92114 0.91082 0.91843 0.91193 0.91415 0.89505 0.92340 0.92657 0.92492 0.92528 0.85945 0.86123 0.86284 0.86088 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.13 -2.58 6.26 -26.73 -0.17 -2.75 16 3 C 0.10 2.34 4.29 -4.04 -0.02 2.32 16 4 N -0.46 -11.13 2.26 -114.81 -0.26 -11.39 16 5 C -0.35 -8.88 8.71 -14.94 -0.13 -9.01 16 6 H 0.11 2.79 5.31 -52.48 -0.28 2.51 16 7 C 0.07 1.78 5.31 -17.47 -0.09 1.68 16 8 N -0.85 -22.67 13.96 55.50 0.77 -21.90 16 9 Si 0.87 20.24 24.94 -169.99 -4.24 16.00 16 10 H -0.27 -6.07 6.65 56.52 0.38 -5.70 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.48 11.66 6.95 -10.99 -0.08 11.58 16 14 O -0.58 -15.51 16.10 -14.03 -0.23 -15.74 16 15 C 0.09 1.74 2.31 -27.88 -0.06 1.68 16 16 H 0.09 1.73 7.19 -51.93 -0.37 1.35 16 17 C -0.17 -2.97 9.25 37.16 0.34 -2.62 16 18 O -0.36 -7.12 9.54 -54.81 -0.52 -7.64 16 19 C 0.10 1.51 5.84 36.00 0.21 1.72 16 20 C -0.08 -1.15 5.51 -104.62 -0.58 -1.73 16 21 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 22 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 24 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 25 C -0.10 -1.32 9.70 -39.58 -0.38 -1.71 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 1.45 2.76 -51.93 -0.14 1.31 16 32 H 0.07 1.59 7.36 -51.93 -0.38 1.21 16 33 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.09 1.63 5.99 -51.93 -0.31 1.32 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.83 7.60 -51.93 -0.39 0.43 16 37 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.06 0.77 7.53 -51.93 -0.39 0.37 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -30.20 350.81 -7.85 -38.05 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.51 Total: 5.25 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.16 Total: -7.92 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.52 Total: -33.29 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.75 Total: -23.38 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.24 Total: 16.00 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.20 -7.85 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299122382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.558 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds