Wall clock time and date at job start Tue Mar 31 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 N 1.46500 * 109.47408 * 179.97438 * 3 2 1 5 5 C 1.37093 * 119.99947 * 270.00640 * 4 3 2 6 6 H 1.08005 * 119.99882 * 147.21126 * 5 4 3 7 7 C 1.38946 * 119.99879 * 327.20086 * 5 4 3 8 8 N 1.31415 * 119.99988 * 156.05013 * 7 5 4 9 9 Si 1.86801 * 120.00425 * 336.05058 * 7 5 4 10 10 H 1.48501 * 109.46900 * 95.40343 * 9 7 5 11 11 H 1.48495 * 109.47416 * 215.40619 * 9 7 5 12 12 H 1.48504 * 109.46874 * 335.41056 * 9 7 5 13 13 C 1.34777 * 119.99593 * 89.99861 * 4 3 2 14 14 O 1.21293 * 120.00137 * 5.34023 * 13 4 3 15 15 C 1.50699 * 119.99820 * 185.33408 * 13 4 3 16 16 H 1.09001 * 109.47183 * 312.81019 * 15 13 4 17 17 C 1.53006 * 109.46917 * 72.80368 * 15 13 4 18 18 O 1.42899 * 109.47219 * 192.80553 * 15 13 4 19 19 C 1.42902 * 114.00008 * 151.59384 * 18 15 13 20 20 C 1.50698 * 109.46956 * 175.45234 * 19 18 15 21 21 C 1.38234 * 120.00299 * 269.72594 * 20 19 18 22 22 C 1.38234 * 119.99750 * 179.76783 * 21 20 19 23 23 C 1.38235 * 120.00416 * 0.50812 * 22 21 20 24 24 C 1.38238 * 119.99696 * 359.74786 * 23 22 21 25 25 C 1.38237 * 119.99967 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.46808 * 60.00161 * 1 2 3 27 27 H 1.09000 * 109.47004 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47132 * 299.99819 * 1 2 3 29 29 H 1.09001 * 109.47012 * 240.00024 * 2 1 3 30 30 H 1.08996 * 109.47411 * 120.00275 * 2 1 3 31 31 H 1.09004 * 109.46689 * 59.99804 * 3 2 1 32 32 H 1.08996 * 109.47153 * 300.00433 * 3 2 1 33 33 H 0.96997 * 120.00392 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47220 * 294.97103 * 17 15 13 35 35 H 1.09002 * 109.46937 * 54.96938 * 17 15 13 36 36 H 1.09002 * 109.47067 * 174.96783 * 17 15 13 37 37 H 1.08993 * 109.46953 * 295.45921 * 19 18 15 38 38 H 1.08999 * 109.46960 * 55.45510 * 19 18 15 39 39 H 1.08003 * 119.99930 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.99638 * 180.23375 * 22 21 20 41 41 H 1.07998 * 120.00199 * 179.72319 * 23 22 21 42 42 H 1.07990 * 119.99971 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.99830 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.4426 1.1882 6 1 5.1410 0.9361 1.2631 7 6 3.6609 2.0945 2.2953 8 7 4.0226 1.7327 3.5058 9 14 2.4353 3.4850 2.0632 10 1 1.0540 2.9507 2.1716 11 1 2.6512 4.5152 3.1107 12 1 2.6264 4.0946 0.7225 13 6 4.1793 1.4424 -1.1664 14 8 3.5772 1.5399 -2.2147 15 6 5.6814 1.3211 -1.1686 16 1 6.1027 2.0102 -0.4366 17 6 6.0779 -0.1118 -0.8072 18 8 6.1832 1.6409 -2.4678 19 6 7.5072 2.1787 -2.4633 20 6 7.9750 2.3734 -3.8826 21 6 8.6451 1.3557 -4.5353 22 6 9.0700 1.5326 -5.8387 23 6 8.8340 2.7311 -6.4860 24 6 8.1686 3.7507 -5.8315 25 6 7.7386 3.5717 -4.5300 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6535 2.1880 4.2787 34 1 5.7733 -0.3257 0.2173 35 1 5.5842 -0.8075 -1.4857 36 1 7.1586 -0.2231 -0.8957 37 1 7.5080 3.1378 -1.9456 38 1 8.1778 1.4888 -1.9511 39 1 8.8331 0.4208 -4.0282 40 1 9.5902 0.7361 -6.3499 41 1 9.1699 2.8709 -7.5029 42 1 7.9846 4.6871 -6.3370 43 1 7.2191 4.3685 -4.0185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299122382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:38 Heat of formation + Delta-G solvation = -65.218527 kcal Electronic energy + Delta-G solvation = -23417.090535 eV Core-core repulsion = 20041.106487 eV Total energy + Delta-G solvation = -3375.984048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08288 -40.18829 -38.56786 -37.06104 -34.80675 -33.80416 -33.13202 -31.79559 -31.58422 -27.71586 -27.20673 -26.86378 -24.38906 -23.46994 -22.76935 -22.24070 -20.88676 -19.21941 -18.45323 -17.72406 -17.50297 -16.78550 -16.68622 -16.39729 -16.00317 -15.72123 -15.62659 -15.22870 -14.91495 -14.49620 -14.35426 -14.24977 -13.95373 -13.82219 -13.48703 -13.37376 -13.22509 -13.16918 -12.91671 -12.58581 -12.50427 -12.31493 -12.11580 -11.92532 -11.87318 -11.78150 -11.53922 -11.02715 -10.78244 -10.26355 -9.82734 -9.82210 -9.73963 -8.54702 -6.09213 0.33318 0.49994 1.14599 1.29678 1.39871 1.78749 2.13254 2.20508 2.77936 2.94670 3.31067 3.82728 3.89377 3.92988 4.03446 4.10088 4.14805 4.18935 4.25335 4.29794 4.34928 4.36152 4.41637 4.51080 4.61760 4.65471 4.75684 4.78876 4.87020 4.90885 5.06659 5.07694 5.15504 5.18512 5.20700 5.27257 5.45881 5.54617 5.59604 5.68787 5.98450 6.09984 6.17020 6.28879 6.92580 7.38361 7.73882 8.58187 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.003917 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.074270 B = 7147.355702 C = 7469.800358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.095 3.905 4 N -0.467 5.467 5 C -0.353 4.353 6 H 0.106 0.894 7 C 0.039 3.961 8 N -0.882 5.882 9 Si 0.914 3.086 10 H -0.256 1.256 11 H -0.283 1.283 12 H -0.278 1.278 13 C 0.472 3.528 14 O -0.612 6.612 15 C 0.090 3.910 16 H 0.087 0.913 17 C -0.154 4.154 18 O -0.380 6.380 19 C 0.093 3.907 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.120 4.120 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.281 0.719 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 0.047 -11.206 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.027 4.027 4 N -0.188 5.188 5 C -0.480 4.480 6 H 0.124 0.876 7 C -0.166 4.166 8 N -0.519 5.519 9 Si 0.741 3.259 10 H -0.182 1.182 11 H -0.210 1.210 12 H -0.203 1.203 13 C 0.262 3.738 14 O -0.498 6.498 15 C 0.030 3.970 16 H 0.105 0.895 17 C -0.212 4.212 18 O -0.299 6.299 19 C 0.017 3.983 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.148 4.148 25 C -0.138 4.138 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.161 0.839 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.777 0.090 -11.648 13.476 hybrid contribution -0.534 0.853 0.738 1.248 sum 6.243 0.943 -10.910 12.606 Atomic orbital electron populations 1.21686 0.93291 1.03003 1.01995 1.21690 0.97466 0.95521 1.01571 1.21797 0.81608 0.98695 1.00646 1.43825 1.04707 1.65044 1.05264 1.19274 1.07496 1.35176 0.86051 0.87629 1.25655 0.98473 0.98018 0.94483 1.69818 1.44431 1.39134 0.98482 0.86370 0.80582 0.81014 0.77918 1.18233 1.20987 1.20294 1.20673 0.90194 0.79723 0.83251 1.90521 1.71032 1.55439 1.32781 1.21608 0.91018 0.98913 0.85465 0.89500 1.22084 1.02791 0.93881 1.02406 1.88037 1.30990 1.83617 1.27265 1.21567 0.83790 0.98598 0.94300 1.19751 0.99828 0.95422 0.95581 1.21315 0.97688 0.98257 0.95737 1.21494 1.00196 0.98565 0.94325 1.21570 0.97985 0.93129 1.00971 1.21445 0.98624 1.00569 0.94206 1.21292 0.99152 0.97299 0.96033 0.92209 0.90483 0.92587 0.92961 0.92088 0.92039 0.91838 0.90905 0.90610 0.92924 0.89444 0.92397 0.90590 0.84961 0.83339 0.83169 0.83925 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.91 71.98 0.71 -3.59 16 2 C -0.12 -4.82 6.26 30.60 0.19 -4.63 16 3 C 0.09 4.27 4.29 86.38 0.37 4.64 16 4 N -0.47 -22.75 2.26 -635.54 -1.44 -24.19 16 5 C -0.35 -17.81 8.71 84.04 0.73 -17.08 16 6 H 0.11 5.37 5.31 -2.91 -0.02 5.36 16 7 C 0.04 2.01 5.31 84.92 0.45 2.46 16 8 N -0.88 -46.71 13.96 21.66 0.30 -46.40 16 9 Si 0.91 41.26 24.94 68.60 1.71 42.98 16 10 H -0.26 -10.81 6.65 99.48 0.66 -10.14 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.47 23.18 6.95 87.66 0.61 23.79 16 14 O -0.61 -33.46 16.10 15.65 0.25 -33.21 16 15 C 0.09 3.73 2.31 29.85 0.07 3.80 16 16 H 0.09 3.52 7.19 -2.39 -0.02 3.50 16 17 C -0.15 -5.45 9.25 71.98 0.67 -4.78 16 18 O -0.38 -15.31 9.54 -130.26 -1.24 -16.56 16 19 C 0.09 2.89 5.84 71.24 0.42 3.30 16 20 C -0.11 -3.04 5.51 -19.87 -0.11 -3.15 16 21 C -0.11 -2.75 9.70 22.27 0.22 -2.54 16 22 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 23 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 25 C -0.12 -3.25 9.70 22.27 0.22 -3.04 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.06 2.77 2.76 -2.38 -0.01 2.77 16 32 H 0.06 2.91 7.36 -2.39 -0.02 2.89 16 33 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.08 2.85 5.99 -2.39 -0.01 2.83 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 2.49 7.60 -2.39 -0.02 2.47 16 37 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 38 H 0.08 1.99 7.53 -2.39 -0.02 1.97 16 39 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.14 2.38 8.06 -2.92 -0.02 2.36 16 43 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -64.78 350.81 5.74 -59.03 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.94 Total: 26.21 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 5.21 Total: -7.86 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.13 Total: -70.59 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.99 Total: -49.77 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.71 Total: 42.98 kcal Total: -64.78 5.74 -59.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299122382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.187 kcal (2) G-P(sol) polarization free energy of solvation -64.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds