Wall clock time and date at job start Tue Mar 31 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 N 1.46498 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.37101 * 120.00228 * 91.27558 * 4 3 2 6 6 H 1.08008 * 119.99971 * 223.89599 * 5 4 3 7 7 C 1.38951 * 119.99982 * 43.88427 * 5 4 3 8 8 N 1.31407 * 119.99924 * 17.33163 * 7 5 4 9 9 Si 1.86805 * 120.00151 * 197.32130 * 7 5 4 10 10 H 1.48504 * 109.46764 * 60.00590 * 9 7 5 11 11 H 1.48493 * 109.46829 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46846 * 300.00674 * 9 7 5 13 13 C 1.34772 * 120.00171 * 271.27121 * 4 3 2 14 14 O 1.21292 * 120.00100 * 5.43377 * 13 4 3 15 15 C 1.50704 * 120.00281 * 185.42698 * 13 4 3 16 16 H 1.09000 * 109.46672 * 36.65074 * 15 13 4 17 17 C 1.52995 * 109.47214 * 276.64881 * 15 13 4 18 18 O 1.42897 * 109.46957 * 156.64696 * 15 13 4 19 19 C 1.42903 * 114.00143 * 210.00362 * 18 15 13 20 20 C 1.50701 * 109.47441 * 180.02562 * 19 18 15 21 21 C 1.38231 * 119.99740 * 269.72619 * 20 19 18 22 22 C 1.38234 * 119.99902 * 179.76156 * 21 20 19 23 23 C 1.38239 * 119.99706 * 0.51072 * 22 21 20 24 24 C 1.38231 * 119.99979 * 359.74156 * 23 22 21 25 25 C 1.38229 * 120.00182 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47075 * 60.00112 * 1 2 3 27 27 H 1.09005 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46989 * 300.00083 * 1 2 3 29 29 H 1.08997 * 109.46989 * 239.99917 * 2 1 3 30 30 H 1.08998 * 109.47075 * 119.99888 * 2 1 3 31 31 H 1.08997 * 109.47317 * 60.00118 * 3 2 1 32 32 H 1.08998 * 109.47115 * 299.99863 * 3 2 1 33 33 H 0.96998 * 120.00330 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47435 * 307.06834 * 17 15 13 35 35 H 1.09002 * 109.46854 * 67.07438 * 17 15 13 36 36 H 1.09006 * 109.46992 * 187.06946 * 17 15 13 37 37 H 1.09004 * 109.47090 * 299.99852 * 19 18 15 38 38 H 1.08994 * 109.47324 * 59.99955 * 19 18 15 39 39 H 1.07999 * 120.00437 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.00115 * 180.22906 * 22 21 20 41 41 H 1.08002 * 119.99692 * 179.72062 * 23 22 21 42 42 H 1.08006 * 119.99633 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99893 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1900 1.4691 -1.1879 6 1 5.0437 0.8237 -1.3334 7 6 3.7858 2.3263 -2.2041 8 7 2.9891 3.3358 -1.9341 9 14 4.3754 2.0438 -3.9541 10 1 3.9301 0.7045 -4.4162 11 1 3.8067 3.0888 -4.8426 12 1 5.8582 2.1136 -3.9941 13 6 4.1793 1.4165 1.1660 14 8 3.5774 1.2936 2.2118 15 6 5.6813 1.5398 1.1710 16 1 5.9912 2.2369 0.3924 17 6 6.3065 0.1688 0.9065 18 8 6.1151 2.0237 2.4437 19 6 7.3157 2.7972 2.3930 20 6 7.6788 3.2529 3.7828 21 6 7.2025 4.4591 4.2612 22 6 7.5315 4.8748 5.5378 23 6 8.3456 4.0891 6.3322 24 6 8.8261 2.8853 5.8518 25 6 8.4932 2.4674 4.5770 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 2.7072 3.9344 -2.6434 34 1 5.8994 -0.5580 1.6094 35 1 6.0785 -0.1440 -0.1125 36 1 7.3873 0.2316 1.0340 37 1 8.1237 2.1879 1.9881 38 1 7.1610 3.6666 1.7541 39 1 6.5704 5.0752 3.6389 40 1 7.1564 5.8154 5.9130 41 1 8.6063 4.4160 7.3280 42 1 9.4625 2.2717 6.4724 43 1 8.8690 1.5270 4.2016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299122386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:42 Heat of formation + Delta-G solvation = -63.656055 kcal Electronic energy + Delta-G solvation = -23366.529952 eV Core-core repulsion = 19990.613658 eV Total energy + Delta-G solvation = -3375.916294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.33507 -38.75984 -36.91307 -34.92108 -32.94608 -32.11404 -31.30863 -30.82610 -30.01510 -25.94273 -25.87738 -24.81890 -22.68973 -22.47701 -21.17791 -20.66510 -19.08967 -17.33030 -16.87914 -16.19689 -15.54474 -15.36835 -15.10530 -14.68825 -14.32076 -14.24145 -13.93659 -13.49483 -13.41825 -13.28986 -12.79030 -12.70379 -12.35893 -12.24420 -11.82188 -11.73323 -11.53842 -11.29460 -11.15578 -11.03533 -10.98396 -10.84229 -10.67059 -10.47802 -10.35201 -10.24229 -9.71273 -9.31578 -9.01812 -8.84024 -8.75696 -8.21915 -7.42930 -6.40761 -4.19330 1.36021 1.48263 3.08066 3.17008 3.18219 3.63104 3.91445 4.06888 4.29446 4.84416 4.90960 4.93567 5.03820 5.15257 5.29665 5.41744 5.55032 5.66686 5.72792 5.74183 5.80750 5.81970 5.92494 5.98753 6.05399 6.12500 6.13906 6.27678 6.39783 6.50799 6.54385 6.54999 6.57902 6.65295 6.70640 6.74078 6.83348 7.05873 7.11485 7.34066 7.42713 7.71454 7.98066 8.34992 9.04866 9.51955 9.95794 10.61012 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.004077 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.715064 B = 6865.337270 C = 7577.305146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.124 3.876 4 N -0.439 5.439 5 C -0.349 4.349 6 H 0.087 0.913 7 C 0.050 3.950 8 N -0.856 5.856 9 Si 0.912 3.088 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.481 3.519 14 O -0.586 6.586 15 C 0.084 3.916 16 H 0.087 0.913 17 C -0.162 4.162 18 O -0.357 6.357 19 C 0.098 3.902 20 C -0.079 4.079 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.100 4.100 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.271 0.729 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -0.048 5.979 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.000 4.000 4 N -0.158 5.158 5 C -0.477 4.477 6 H 0.105 0.895 7 C -0.158 4.158 8 N -0.492 5.492 9 Si 0.738 3.262 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.269 3.731 14 O -0.470 6.470 15 C 0.024 3.976 16 H 0.105 0.895 17 C -0.220 4.220 18 O -0.275 6.275 19 C 0.021 3.979 20 C -0.079 4.079 21 C -0.115 4.115 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.145 4.145 25 C -0.118 4.118 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.909 0.036 6.552 10.270 hybrid contribution 0.393 -0.009 -1.289 1.348 sum 8.302 0.027 5.263 9.830 Atomic orbital electron populations 1.21664 0.96668 1.00435 1.01347 1.21844 0.94621 0.99504 1.01384 1.21301 0.81593 0.94383 1.02683 1.43291 1.04415 1.64044 1.04096 1.19382 1.15283 1.21943 0.91064 0.89525 1.25484 0.96543 0.93391 1.00343 1.69930 1.33372 1.12263 1.33594 0.86256 0.79255 0.78374 0.82349 1.19671 1.20848 1.19648 1.20167 0.88334 0.80516 0.84113 1.90536 1.70093 1.54202 1.32174 1.21754 0.94077 0.96210 0.85570 0.89509 1.22128 0.99876 0.97136 1.02821 1.88064 1.40486 1.69772 1.29200 1.21350 0.88413 0.95068 0.93070 1.19692 0.97492 0.94776 0.95917 1.21147 0.98233 0.96183 0.95908 1.21132 0.98758 1.00050 0.94341 1.21135 0.98154 0.95069 0.99563 1.21097 1.00766 0.96764 0.95871 1.21068 0.97760 0.98949 0.94026 0.93041 0.93638 0.93150 0.92281 0.92822 0.92976 0.88726 0.91917 0.92287 0.90569 0.92744 0.92793 0.92443 0.85769 0.86074 0.86310 0.86173 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.13 -2.80 6.25 -26.73 -0.17 -2.96 16 3 C 0.12 2.98 4.93 -4.04 -0.02 2.96 16 4 N -0.44 -11.07 2.47 -114.81 -0.28 -11.35 16 5 C -0.35 -8.57 7.93 -14.93 -0.12 -8.69 16 6 H 0.09 2.00 5.84 -52.48 -0.31 1.70 16 7 C 0.05 1.22 4.99 -17.47 -0.09 1.13 16 8 N -0.86 -22.19 11.70 55.50 0.65 -21.54 16 9 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 10 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.48 12.25 6.85 -10.99 -0.08 12.18 16 14 O -0.59 -16.62 16.31 -13.18 -0.22 -16.83 16 15 C 0.08 1.80 2.40 -27.88 -0.07 1.74 16 16 H 0.09 1.85 7.02 -51.93 -0.36 1.48 16 17 C -0.16 -2.92 9.39 37.16 0.35 -2.57 16 18 O -0.36 -7.52 9.61 -53.96 -0.52 -8.03 16 19 C 0.10 1.60 5.87 36.01 0.21 1.81 16 20 C -0.08 -1.21 5.51 -104.62 -0.58 -1.78 16 21 C -0.10 -1.41 9.70 -39.59 -0.38 -1.79 16 22 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 23 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 24 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 25 C -0.10 -1.35 9.70 -39.59 -0.38 -1.74 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.32 7.54 -51.93 -0.39 0.93 16 32 H 0.09 2.38 5.87 -51.93 -0.30 2.07 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 35 H 0.08 1.35 6.29 -51.93 -0.33 1.02 16 36 H 0.05 0.82 7.76 -51.93 -0.40 0.42 16 37 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 38 H 0.06 0.91 8.03 -51.93 -0.42 0.49 16 39 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -30.34 358.07 -8.84 -39.18 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.70 Total: 6.88 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.14 Total: -7.43 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.37 Total: -32.89 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.73 Total: -24.87 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.34 -8.84 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299122386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.472 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds