Wall clock time and date at job start Tue Mar 31 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 N 1.46498 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.37101 * 120.00228 * 91.27558 * 4 3 2 6 6 H 1.08008 * 119.99971 * 223.89599 * 5 4 3 7 7 C 1.38951 * 119.99982 * 43.88427 * 5 4 3 8 8 N 1.31407 * 119.99924 * 17.33163 * 7 5 4 9 9 Si 1.86805 * 120.00151 * 197.32130 * 7 5 4 10 10 H 1.48504 * 109.46764 * 60.00590 * 9 7 5 11 11 H 1.48493 * 109.46829 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46846 * 300.00674 * 9 7 5 13 13 C 1.34772 * 120.00171 * 271.27121 * 4 3 2 14 14 O 1.21292 * 120.00100 * 5.43377 * 13 4 3 15 15 C 1.50704 * 120.00281 * 185.42698 * 13 4 3 16 16 H 1.09000 * 109.46672 * 36.65074 * 15 13 4 17 17 C 1.52995 * 109.47214 * 276.64881 * 15 13 4 18 18 O 1.42897 * 109.46957 * 156.64696 * 15 13 4 19 19 C 1.42903 * 114.00143 * 210.00362 * 18 15 13 20 20 C 1.50701 * 109.47441 * 180.02562 * 19 18 15 21 21 C 1.38231 * 119.99740 * 269.72619 * 20 19 18 22 22 C 1.38234 * 119.99902 * 179.76156 * 21 20 19 23 23 C 1.38239 * 119.99706 * 0.51072 * 22 21 20 24 24 C 1.38231 * 119.99979 * 359.74156 * 23 22 21 25 25 C 1.38229 * 120.00182 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47075 * 60.00112 * 1 2 3 27 27 H 1.09005 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46989 * 300.00083 * 1 2 3 29 29 H 1.08997 * 109.46989 * 239.99917 * 2 1 3 30 30 H 1.08998 * 109.47075 * 119.99888 * 2 1 3 31 31 H 1.08997 * 109.47317 * 60.00118 * 3 2 1 32 32 H 1.08998 * 109.47115 * 299.99863 * 3 2 1 33 33 H 0.96998 * 120.00330 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47435 * 307.06834 * 17 15 13 35 35 H 1.09002 * 109.46854 * 67.07438 * 17 15 13 36 36 H 1.09006 * 109.46992 * 187.06946 * 17 15 13 37 37 H 1.09004 * 109.47090 * 299.99852 * 19 18 15 38 38 H 1.08994 * 109.47324 * 59.99955 * 19 18 15 39 39 H 1.07999 * 120.00437 * 359.97438 * 21 20 19 40 40 H 1.07997 * 120.00115 * 180.22906 * 22 21 20 41 41 H 1.08002 * 119.99692 * 179.72062 * 23 22 21 42 42 H 1.08006 * 119.99633 * 179.97438 * 24 23 22 43 43 H 1.08002 * 119.99893 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1900 1.4691 -1.1879 6 1 5.0437 0.8237 -1.3334 7 6 3.7858 2.3263 -2.2041 8 7 2.9891 3.3358 -1.9341 9 14 4.3754 2.0438 -3.9541 10 1 3.9301 0.7045 -4.4162 11 1 3.8067 3.0888 -4.8426 12 1 5.8582 2.1136 -3.9941 13 6 4.1793 1.4165 1.1660 14 8 3.5774 1.2936 2.2118 15 6 5.6813 1.5398 1.1710 16 1 5.9912 2.2369 0.3924 17 6 6.3065 0.1688 0.9065 18 8 6.1151 2.0237 2.4437 19 6 7.3157 2.7972 2.3930 20 6 7.6788 3.2529 3.7828 21 6 7.2025 4.4591 4.2612 22 6 7.5315 4.8748 5.5378 23 6 8.3456 4.0891 6.3322 24 6 8.8261 2.8853 5.8518 25 6 8.4932 2.4674 4.5770 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 2.7072 3.9344 -2.6434 34 1 5.8994 -0.5580 1.6094 35 1 6.0785 -0.1440 -0.1125 36 1 7.3873 0.2316 1.0340 37 1 8.1237 2.1879 1.9881 38 1 7.1610 3.6666 1.7541 39 1 6.5704 5.0752 3.6389 40 1 7.1564 5.8154 5.9130 41 1 8.6063 4.4160 7.3280 42 1 9.4625 2.2717 6.4724 43 1 8.8690 1.5270 4.2016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299122386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:41 Heat of formation + Delta-G solvation = -78.816350 kcal Electronic energy + Delta-G solvation = -23367.187352 eV Core-core repulsion = 19990.613658 eV Total energy + Delta-G solvation = -3376.573694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87136 -40.14773 -38.47417 -36.87697 -34.65942 -33.57394 -32.95964 -31.80301 -31.49087 -27.66893 -27.17549 -26.64153 -24.29887 -23.47616 -22.39897 -22.24021 -21.00687 -19.09194 -18.29844 -17.53240 -17.27473 -16.67634 -16.50500 -16.33046 -15.95524 -15.76324 -15.50348 -15.07431 -14.91766 -14.29201 -14.22784 -14.07791 -13.86109 -13.52627 -13.40729 -13.17070 -13.12976 -12.96001 -12.81620 -12.62125 -12.40194 -12.27230 -12.05860 -11.97622 -11.91532 -11.77655 -11.51595 -11.05575 -10.72524 -10.16485 -9.83079 -9.75237 -9.40550 -8.30206 -6.15882 0.32848 0.49154 1.44585 1.50574 1.58830 1.93192 2.29181 2.46509 2.92852 3.04231 3.40595 3.88987 3.91441 4.07118 4.13966 4.16548 4.21591 4.28018 4.31318 4.34731 4.38261 4.41793 4.54984 4.64899 4.73776 4.75445 4.78010 4.92258 4.94215 5.05795 5.07613 5.14592 5.15880 5.20330 5.34533 5.48058 5.53097 5.53958 5.58649 5.68479 6.05508 6.09266 6.19605 6.44070 7.11750 7.56088 8.01122 8.73010 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017304 B = 0.004077 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.715064 B = 6865.337270 C = 7577.305146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.123 3.877 4 N -0.445 5.445 5 C -0.363 4.363 6 H 0.102 0.898 7 C 0.010 3.990 8 N -0.892 5.892 9 Si 0.982 3.018 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.461 3.539 14 O -0.628 6.628 15 C 0.092 3.908 16 H 0.083 0.917 17 C -0.151 4.151 18 O -0.384 6.384 19 C 0.095 3.905 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.111 4.111 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.026 0.974 32 H 0.084 0.916 33 H 0.273 0.727 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 -0.925 5.787 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C 0.000 4.000 4 N -0.164 5.164 5 C -0.490 4.490 6 H 0.120 0.880 7 C -0.195 4.195 8 N -0.528 5.528 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.183 1.183 13 C 0.250 3.750 14 O -0.515 6.515 15 C 0.032 3.968 16 H 0.101 0.899 17 C -0.209 4.209 18 O -0.304 6.304 19 C 0.019 3.981 20 C -0.106 4.106 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.129 4.129 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.160 0.840 41 H 0.170 0.830 42 H 0.169 0.831 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.661 -0.846 6.349 11.592 hybrid contribution -0.143 0.350 -1.137 1.198 sum 9.519 -0.496 5.212 10.864 Atomic orbital electron populations 1.21620 0.93640 1.02429 1.01708 1.21723 0.97250 0.96696 1.00600 1.21293 0.81678 0.96324 1.00727 1.43581 1.04908 1.63271 1.04609 1.19797 1.15891 1.22496 0.90829 0.88040 1.26352 0.96339 0.92637 1.04129 1.70050 1.34655 1.13212 1.34917 0.85167 0.79297 0.78176 0.76873 1.18966 1.21120 1.18296 1.21009 0.90399 0.80033 0.83556 1.90484 1.71382 1.56243 1.33438 1.21626 0.91347 0.98039 0.85820 0.89883 1.22056 1.01679 0.94566 1.02575 1.88025 1.42735 1.70576 1.29022 1.21550 0.87342 0.94787 0.94409 1.19766 0.99210 0.95732 0.95923 1.21280 0.99086 0.96492 0.97183 1.21439 0.98745 1.01129 0.93539 1.21574 0.96797 0.94536 1.00694 1.21508 1.00441 0.97131 0.95379 1.21314 0.97546 0.99278 0.94738 0.92325 0.90789 0.93183 0.92089 0.94341 0.95505 0.89829 0.91779 0.93278 0.90239 0.89305 0.90349 0.92951 0.86799 0.84000 0.83028 0.83107 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 9.91 71.98 0.71 -3.83 16 2 C -0.12 -5.21 6.25 30.59 0.19 -5.02 16 3 C 0.12 6.17 4.93 86.38 0.43 6.59 16 4 N -0.44 -23.11 2.47 -635.54 -1.57 -24.68 16 5 C -0.36 -17.87 7.93 84.04 0.67 -17.20 16 6 H 0.10 4.60 5.84 -2.91 -0.02 4.59 16 7 C 0.01 0.47 4.99 84.93 0.42 0.89 16 8 N -0.89 -46.96 11.70 21.66 0.25 -46.70 16 9 Si 0.98 37.68 29.59 68.60 2.03 39.71 16 10 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 11 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 13 C 0.46 24.34 6.85 87.66 0.60 24.95 16 14 O -0.63 -37.36 16.31 14.84 0.24 -37.12 16 15 C 0.09 4.00 2.40 29.85 0.07 4.07 16 16 H 0.08 3.60 7.02 -2.39 -0.02 3.58 16 17 C -0.15 -5.32 9.39 71.98 0.68 -4.64 16 18 O -0.38 -16.58 9.61 -131.07 -1.26 -17.84 16 19 C 0.10 3.15 5.87 71.24 0.42 3.57 16 20 C -0.11 -3.27 5.51 -19.87 -0.11 -3.38 16 21 C -0.12 -3.63 9.70 22.27 0.22 -3.42 16 22 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 23 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 24 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 25 C -0.11 -2.86 9.70 22.27 0.22 -2.64 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.03 1.43 7.54 -2.39 -0.02 1.41 16 32 H 0.08 4.35 5.87 -2.39 -0.01 4.33 16 33 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 35 H 0.08 2.71 6.29 -2.39 -0.02 2.70 16 36 H 0.09 2.48 7.76 -2.38 -0.02 2.46 16 37 H 0.08 2.14 7.70 -2.38 -0.02 2.12 16 38 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 39 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -67.83 358.07 5.86 -61.97 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.98 Total: 32.25 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.18 Total: -7.59 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.32 Total: -71.39 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -1.02 Total: -54.95 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -67.83 5.86 -61.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299122386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.845 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds