Wall clock time and date at job start Tue Mar 31 2020 06:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46854 * 2 1 4 4 N 1.46502 * 109.46836 * 179.97438 * 3 2 1 5 5 C 1.37092 * 119.99879 * 264.53525 * 4 3 2 6 6 H 1.08005 * 120.00253 * 146.01734 * 5 4 3 7 7 C 1.38955 * 120.00198 * 326.01662 * 5 4 3 8 8 N 1.31414 * 119.99699 * 337.80699 * 7 5 4 9 9 Si 1.86800 * 120.00263 * 157.80757 * 7 5 4 10 10 H 1.48500 * 109.47138 * 89.99991 * 9 7 5 11 11 H 1.48500 * 109.47182 * 210.00002 * 9 7 5 12 12 H 1.48495 * 109.46825 * 330.00096 * 9 7 5 13 13 C 1.34777 * 120.00170 * 84.53989 * 4 3 2 14 14 O 1.21294 * 119.99873 * 359.97438 * 13 4 3 15 15 C 1.50696 * 119.99993 * 179.97438 * 13 4 3 16 16 C 1.53004 * 109.47058 * 179.97438 * 15 13 4 17 17 O 1.42901 * 109.47014 * 180.02562 * 16 15 13 18 18 C 1.42903 * 113.99958 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47252 * 179.97438 * 18 17 16 20 20 C 1.38237 * 120.00001 * 90.00201 * 19 18 17 21 21 C 1.38231 * 119.99850 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00224 * 359.97438 * 21 20 19 23 23 C 1.38240 * 119.99964 * 0.27843 * 22 21 20 24 24 C 1.38234 * 119.99931 * 269.98079 * 19 18 17 25 25 H 1.08997 * 109.47693 * 300.00026 * 1 2 3 26 26 H 1.08999 * 109.47267 * 60.00616 * 1 2 3 27 27 H 1.09002 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47595 * 239.99522 * 2 1 3 29 29 H 1.09006 * 109.46925 * 119.99388 * 2 1 3 30 30 H 1.08992 * 109.47583 * 59.99934 * 3 2 1 31 31 H 1.09006 * 109.46855 * 299.99431 * 3 2 1 32 32 H 0.96998 * 120.00012 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47562 * 59.99691 * 15 13 4 34 34 H 1.08996 * 109.47625 * 299.99487 * 15 13 4 35 35 H 1.08994 * 109.47119 * 60.00005 * 16 15 13 36 36 H 1.08999 * 109.46776 * 299.99514 * 16 15 13 37 37 H 1.09008 * 109.46937 * 59.99897 * 18 17 16 38 38 H 1.09000 * 109.47461 * 300.00345 * 18 17 16 39 39 H 1.07999 * 119.99598 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.99903 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.00280 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00001 * 179.72582 * 23 22 21 43 43 H 1.08003 * 120.00014 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5558 1.1828 6 1 5.1315 1.0430 1.3126 7 6 3.6727 2.3303 2.2140 8 7 2.8019 3.2786 1.9504 9 14 4.2152 2.0237 3.9750 10 1 5.4054 2.8582 4.2787 11 1 3.1112 2.3799 4.9022 12 1 4.5601 0.5893 4.1439 13 6 4.1793 1.3313 -1.1610 14 8 3.5733 1.2307 -2.2068 15 6 5.6863 1.3319 -1.1603 16 6 6.1969 1.1937 -2.5960 17 8 7.6259 1.1936 -2.5953 18 6 8.2078 1.0679 -3.8945 19 6 9.7100 1.0799 -3.7755 20 6 10.3994 -0.1061 -3.6055 21 6 11.7774 -0.0951 -3.4968 22 6 12.4661 1.1019 -3.5587 23 6 11.7763 2.2885 -3.7235 24 6 10.3986 2.2770 -3.8367 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 2.4411 3.8195 2.6701 33 1 6.0498 0.4953 -0.5637 34 1 6.0492 2.2670 -0.7338 35 1 5.8335 2.0300 -3.1930 36 1 5.8342 0.2583 -3.0221 37 1 7.8864 1.9018 -4.5187 38 1 7.8863 0.1300 -4.3475 39 1 9.8613 -1.0413 -3.5575 40 1 12.3160 -1.0217 -3.3636 41 1 13.5427 1.1105 -3.4734 42 1 12.3140 3.2240 -3.7674 43 1 9.8600 3.2037 -3.9695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299137237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:48 Heat of formation + Delta-G solvation = -67.818599 kcal Electronic energy + Delta-G solvation = -22498.776186 eV Core-core repulsion = 19122.679390 eV Total energy + Delta-G solvation = -3376.096796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.41993 -38.69829 -37.30851 -35.13553 -32.89412 -32.28993 -31.34548 -30.99197 -30.21048 -26.24527 -25.68000 -24.63502 -22.66739 -22.55318 -21.37579 -20.56260 -19.02846 -17.18654 -16.74579 -16.34146 -16.01474 -15.44359 -15.36765 -14.95935 -14.63583 -14.31580 -13.88230 -13.81008 -13.70744 -13.48468 -12.84040 -12.76683 -12.51724 -12.32839 -12.09178 -11.60374 -11.39186 -11.30148 -11.14581 -11.01858 -10.94052 -10.76523 -10.70200 -10.58131 -10.34565 -10.23219 -9.72997 -9.31050 -9.09268 -9.00722 -8.91804 -8.44303 -7.54040 -6.40169 -4.06044 1.18739 1.31461 3.10453 3.20914 3.25171 3.52355 3.89092 4.05167 4.16605 4.74392 4.74538 4.88909 4.94827 5.01719 5.14856 5.23070 5.37292 5.48064 5.56633 5.69488 5.74057 5.79869 5.84586 5.88211 5.95355 5.99543 6.07216 6.34633 6.36259 6.39299 6.51933 6.52962 6.54981 6.56075 6.67566 6.70990 6.83542 6.88973 7.12653 7.36639 7.48036 7.50037 7.91170 8.36189 9.05553 9.49995 9.93436 10.61268 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.003223 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.234760 B = 8686.672839 C = 9727.207178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.114 3.886 4 N -0.435 5.435 5 C -0.342 4.342 6 H 0.092 0.908 7 C 0.044 3.956 8 N -0.857 5.857 9 Si 0.912 3.088 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.470 3.530 14 O -0.612 6.612 15 C -0.116 4.116 16 C 0.081 3.919 17 O -0.385 6.385 18 C 0.102 3.898 19 C -0.084 4.084 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.099 4.099 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.270 0.730 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.679 -4.022 -7.393 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.152 5.152 5 C -0.469 4.469 6 H 0.109 0.891 7 C -0.162 4.162 8 N -0.493 5.493 9 Si 0.739 3.261 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.259 3.741 14 O -0.499 6.499 15 C -0.156 4.156 16 C 0.004 3.996 17 O -0.305 6.305 18 C 0.026 3.974 19 C -0.084 4.084 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.343 -3.893 -7.595 14.196 hybrid contribution 0.121 -0.062 0.871 0.882 sum 11.464 -3.955 -6.724 13.866 Atomic orbital electron populations 1.21652 0.96596 1.00410 1.01386 1.21835 0.94710 0.99494 1.01280 1.21458 0.81344 0.94511 1.03589 1.43472 1.04843 1.61946 1.04949 1.19467 1.07512 1.29465 0.90505 0.89054 1.25325 0.96923 0.93484 1.00467 1.69948 1.30023 1.16127 1.33225 0.86172 0.78449 0.79196 0.82333 1.20167 1.20699 1.19284 1.20147 0.88861 0.81338 0.83779 1.90517 1.70607 1.57051 1.31766 1.21176 0.94306 1.04663 0.95432 1.22243 0.78533 1.00870 0.97941 1.87909 1.20779 1.94866 1.26949 1.21247 0.89174 1.00759 0.86267 1.19710 0.94504 0.93597 1.00610 1.21101 0.94283 0.97878 0.98495 1.21135 0.94274 0.98132 1.00789 1.21169 0.99814 0.92750 1.00011 1.21145 0.94279 0.98198 1.00659 1.21117 0.94301 0.97587 0.98697 0.93003 0.93142 0.93651 0.92882 0.92408 0.87508 0.93060 0.91991 0.89738 0.88862 0.92873 0.93051 0.92563 0.92610 0.85886 0.86033 0.86192 0.86004 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.15 0.37 -2.07 16 2 C -0.13 -2.80 6.22 -26.73 -0.17 -2.96 16 3 C 0.11 2.77 4.90 -4.04 -0.02 2.75 16 4 N -0.43 -11.05 2.56 -114.81 -0.29 -11.34 16 5 C -0.34 -8.67 8.70 -14.93 -0.13 -8.80 16 6 H 0.09 2.22 6.97 -52.48 -0.37 1.86 16 7 C 0.04 1.11 4.92 -17.46 -0.09 1.02 16 8 N -0.86 -22.49 11.34 55.50 0.63 -21.86 16 9 Si 0.91 19.35 29.61 -169.99 -5.03 14.31 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 13 C 0.47 11.55 7.60 -10.99 -0.08 11.46 16 14 O -0.61 -16.09 15.65 5.54 0.09 -16.01 16 15 C -0.12 -2.41 4.73 -27.88 -0.13 -2.55 16 16 C 0.08 1.48 5.23 37.16 0.19 1.68 16 17 O -0.39 -6.60 10.33 -35.23 -0.36 -6.96 16 18 C 0.10 1.38 6.06 36.01 0.22 1.60 16 19 C -0.08 -1.08 5.51 -104.62 -0.58 -1.65 16 20 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 21 C -0.13 -1.28 10.05 -39.59 -0.40 -1.67 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 24 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.11 2.72 5.35 -51.93 -0.28 2.44 16 31 H 0.05 1.29 7.59 -51.93 -0.39 0.89 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.08 1.69 7.64 -51.93 -0.40 1.29 16 34 H 0.09 1.98 8.10 -51.93 -0.42 1.56 16 35 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.06 0.70 8.09 -51.92 -0.42 0.28 16 38 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -29.47 361.46 -8.80 -38.27 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.90 Total: 5.68 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.37 Total: -7.54 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.34 Total: -33.21 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.28 Total: -22.97 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.47 -8.80 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299137237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.553 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds