Wall clock time and date at job start Tue Mar 31 2020 06:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46854 * 2 1 4 4 N 1.46502 * 109.46836 * 179.97438 * 3 2 1 5 5 C 1.37092 * 119.99879 * 264.53525 * 4 3 2 6 6 H 1.08005 * 120.00253 * 146.01734 * 5 4 3 7 7 C 1.38955 * 120.00198 * 326.01662 * 5 4 3 8 8 N 1.31414 * 119.99699 * 337.80699 * 7 5 4 9 9 Si 1.86800 * 120.00263 * 157.80757 * 7 5 4 10 10 H 1.48500 * 109.47138 * 89.99991 * 9 7 5 11 11 H 1.48500 * 109.47182 * 210.00002 * 9 7 5 12 12 H 1.48495 * 109.46825 * 330.00096 * 9 7 5 13 13 C 1.34777 * 120.00170 * 84.53989 * 4 3 2 14 14 O 1.21294 * 119.99873 * 359.97438 * 13 4 3 15 15 C 1.50696 * 119.99993 * 179.97438 * 13 4 3 16 16 C 1.53004 * 109.47058 * 179.97438 * 15 13 4 17 17 O 1.42901 * 109.47014 * 180.02562 * 16 15 13 18 18 C 1.42903 * 113.99958 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47252 * 179.97438 * 18 17 16 20 20 C 1.38237 * 120.00001 * 90.00201 * 19 18 17 21 21 C 1.38231 * 119.99850 * 179.97438 * 20 19 18 22 22 C 1.38232 * 120.00224 * 359.97438 * 21 20 19 23 23 C 1.38240 * 119.99964 * 0.27843 * 22 21 20 24 24 C 1.38234 * 119.99931 * 269.98079 * 19 18 17 25 25 H 1.08997 * 109.47693 * 300.00026 * 1 2 3 26 26 H 1.08999 * 109.47267 * 60.00616 * 1 2 3 27 27 H 1.09002 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47595 * 239.99522 * 2 1 3 29 29 H 1.09006 * 109.46925 * 119.99388 * 2 1 3 30 30 H 1.08992 * 109.47583 * 59.99934 * 3 2 1 31 31 H 1.09006 * 109.46855 * 299.99431 * 3 2 1 32 32 H 0.96998 * 120.00012 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47562 * 59.99691 * 15 13 4 34 34 H 1.08996 * 109.47625 * 299.99487 * 15 13 4 35 35 H 1.08994 * 109.47119 * 60.00005 * 16 15 13 36 36 H 1.08999 * 109.46776 * 299.99514 * 16 15 13 37 37 H 1.09008 * 109.46937 * 59.99897 * 18 17 16 38 38 H 1.09000 * 109.47461 * 300.00345 * 18 17 16 39 39 H 1.07999 * 119.99598 * 359.97438 * 20 19 18 40 40 H 1.08000 * 119.99903 * 179.97438 * 21 20 19 41 41 H 1.07999 * 120.00280 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00001 * 179.72582 * 23 22 21 43 43 H 1.08003 * 120.00014 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5558 1.1828 6 1 5.1315 1.0430 1.3126 7 6 3.6727 2.3303 2.2140 8 7 2.8019 3.2786 1.9504 9 14 4.2152 2.0237 3.9750 10 1 5.4054 2.8582 4.2787 11 1 3.1112 2.3799 4.9022 12 1 4.5601 0.5893 4.1439 13 6 4.1793 1.3313 -1.1610 14 8 3.5733 1.2307 -2.2068 15 6 5.6863 1.3319 -1.1603 16 6 6.1969 1.1937 -2.5960 17 8 7.6259 1.1936 -2.5953 18 6 8.2078 1.0679 -3.8945 19 6 9.7100 1.0799 -3.7755 20 6 10.3994 -0.1061 -3.6055 21 6 11.7774 -0.0951 -3.4968 22 6 12.4661 1.1019 -3.5587 23 6 11.7763 2.2885 -3.7235 24 6 10.3986 2.2770 -3.8367 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 2.4411 3.8195 2.6701 33 1 6.0498 0.4953 -0.5637 34 1 6.0492 2.2670 -0.7338 35 1 5.8335 2.0300 -3.1930 36 1 5.8342 0.2583 -3.0221 37 1 7.8864 1.9018 -4.5187 38 1 7.8863 0.1300 -4.3475 39 1 9.8613 -1.0413 -3.5575 40 1 12.3160 -1.0217 -3.3636 41 1 13.5427 1.1105 -3.4734 42 1 12.3140 3.2240 -3.7674 43 1 9.8600 3.2037 -3.9695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299137237.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:47 Heat of formation + Delta-G solvation = -82.403806 kcal Electronic energy + Delta-G solvation = -22499.408648 eV Core-core repulsion = 19122.679390 eV Total energy + Delta-G solvation = -3376.729258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66042 -40.23207 -38.60538 -37.04162 -34.61945 -33.54530 -33.10989 -31.79314 -31.65560 -27.78692 -27.06002 -26.36661 -24.13801 -23.47617 -22.35552 -22.17632 -20.95657 -18.79006 -18.09252 -17.73831 -17.33673 -17.00409 -16.64330 -16.28390 -16.08075 -16.02420 -15.39800 -15.35365 -14.91333 -14.40775 -14.33924 -14.21695 -13.67584 -13.61915 -13.37687 -13.30481 -13.18092 -12.95232 -12.61117 -12.42269 -12.32155 -12.23263 -12.04204 -11.96870 -11.87745 -11.84177 -11.52438 -11.00692 -10.63748 -10.41505 -9.82408 -9.76443 -9.51102 -8.32646 -6.05635 0.33152 0.49891 1.41476 1.49012 1.60495 1.98030 2.28362 2.45347 2.92959 3.04551 3.34430 3.88547 3.90145 4.08444 4.12379 4.15075 4.17799 4.28688 4.30873 4.33637 4.39247 4.43957 4.53193 4.64932 4.66342 4.75918 4.85103 4.91058 4.96313 4.99149 5.06888 5.08929 5.15757 5.21648 5.35888 5.45186 5.54764 5.56746 5.60298 5.67782 5.98281 6.09292 6.17727 6.40857 7.09703 7.54950 7.98673 8.69884 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.003223 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.234760 B = 8686.672839 C = 9727.207178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.447 5.447 5 C -0.361 4.361 6 H 0.099 0.901 7 C 0.005 3.995 8 N -0.889 5.889 9 Si 0.982 3.018 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.261 1.261 13 C 0.456 3.544 14 O -0.636 6.636 15 C -0.106 4.106 16 C 0.095 3.905 17 O -0.398 6.398 18 C 0.097 3.903 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.116 4.116 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.030 0.970 32 H 0.274 0.726 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.238 -4.896 -6.610 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.164 5.164 5 C -0.488 4.488 6 H 0.117 0.883 7 C -0.198 4.198 8 N -0.526 5.526 9 Si 0.805 3.195 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.185 1.185 13 C 0.247 3.753 14 O -0.525 6.525 15 C -0.146 4.146 16 C 0.018 3.982 17 O -0.318 6.318 18 C 0.021 3.979 19 C -0.108 4.108 20 C -0.132 4.132 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.910 -4.772 -6.820 15.361 hybrid contribution -0.303 0.250 0.571 0.693 sum 12.607 -4.522 -6.249 14.780 Atomic orbital electron populations 1.21608 0.93568 1.02391 1.01756 1.21724 0.97329 0.96770 1.00506 1.21454 0.81232 0.96440 1.01809 1.43756 1.05408 1.61784 1.05408 1.19791 1.08171 1.30060 0.90775 0.88336 1.26173 0.96772 0.92757 1.04093 1.70042 1.31090 1.16875 1.34556 0.85115 0.77997 0.79278 0.77101 1.19758 1.20405 1.18507 1.20766 0.90419 0.80870 0.83292 1.90483 1.71490 1.58116 1.32437 1.21064 0.91706 1.04559 0.97281 1.21954 0.79602 1.00611 0.96047 1.87876 1.19586 1.94989 1.29341 1.21451 0.89954 1.01647 0.84801 1.19769 0.93896 0.94621 1.02539 1.21310 0.95290 0.97776 0.98837 1.21477 0.93796 0.99526 0.99909 1.21573 1.01341 0.92252 0.98536 1.21470 0.93774 0.99629 0.99914 1.21309 0.95342 0.97456 0.99298 0.92506 0.92935 0.90838 0.94076 0.92563 0.88746 0.95120 0.91670 0.88889 0.89504 0.93550 0.92938 0.91852 0.91511 0.85312 0.83645 0.83362 0.83803 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.91 71.98 0.71 -3.74 16 2 C -0.12 -5.18 6.22 30.59 0.19 -4.99 16 3 C 0.11 5.64 4.90 86.38 0.42 6.07 16 4 N -0.45 -23.13 2.56 -635.53 -1.63 -24.76 16 5 C -0.36 -18.37 8.70 84.04 0.73 -17.64 16 6 H 0.10 4.77 6.97 -2.91 -0.02 4.75 16 7 C 0.01 0.27 4.92 84.93 0.42 0.69 16 8 N -0.89 -47.00 11.34 21.67 0.25 -46.75 16 9 Si 0.98 39.09 29.61 68.60 2.03 41.12 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 12 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 13 C 0.46 22.94 7.60 87.66 0.67 23.61 16 14 O -0.64 -34.31 15.65 -3.07 -0.05 -34.36 16 15 C -0.11 -4.49 4.73 29.85 0.14 -4.35 16 16 C 0.09 3.52 5.23 71.98 0.38 3.90 16 17 O -0.40 -13.63 10.33 -148.98 -1.54 -15.17 16 18 C 0.10 2.63 6.06 71.24 0.43 3.07 16 19 C -0.11 -2.73 5.51 -19.87 -0.11 -2.84 16 20 C -0.11 -2.55 9.70 22.27 0.22 -2.33 16 21 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 22 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 23 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 24 C -0.12 -2.66 9.70 22.27 0.22 -2.45 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.32 8.14 -2.38 -0.02 2.31 16 30 H 0.09 4.91 5.35 -2.39 -0.01 4.90 16 31 H 0.03 1.59 7.59 -2.38 -0.02 1.58 16 32 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.09 3.73 7.64 -2.39 -0.02 3.71 16 34 H 0.09 3.76 8.10 -2.39 -0.02 3.74 16 35 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 37 H 0.06 1.59 8.09 -2.38 -0.02 1.57 16 38 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 39 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -63.28 361.46 5.12 -58.16 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.97 Total: 28.92 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.08 Total: -7.16 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -1.38 Total: -71.51 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -1.59 Total: -49.54 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -63.28 5.12 -58.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299137237.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.243 kcal (2) G-P(sol) polarization free energy of solvation -63.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds