Wall clock time and date at job start Tue Mar 31 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47191 * 2 1 4 4 N 1.46506 * 109.47010 * 180.02562 * 3 2 1 5 5 C 1.37094 * 119.99613 * 264.53854 * 4 3 2 6 6 H 1.08004 * 119.99587 * 146.01275 * 5 4 3 7 7 C 1.38944 * 120.00519 * 326.01080 * 5 4 3 8 8 N 1.31417 * 119.99650 * 337.81350 * 7 5 4 9 9 Si 1.86797 * 120.00255 * 157.81369 * 7 5 4 10 10 H 1.48500 * 109.46975 * 60.00181 * 9 7 5 11 11 H 1.48506 * 109.47101 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47073 * 300.00165 * 9 7 5 13 13 C 1.34775 * 119.99958 * 84.53674 * 4 3 2 14 14 O 1.21296 * 119.99950 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99787 * 180.02562 * 13 4 3 16 16 O 1.42907 * 109.46669 * 180.02562 * 15 13 4 17 17 C 1.35899 * 116.99469 * 179.97438 * 16 15 13 18 18 C 1.38738 * 120.05507 * 180.02562 * 17 16 15 19 19 C 1.38138 * 119.94439 * 180.02562 * 18 17 16 20 20 C 1.38266 * 120.05832 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.94432 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47472 * 90.00087 * 21 20 19 23 23 C 1.38264 * 120.10894 * 0.24757 * 20 19 18 24 24 C 1.38149 * 120.05634 * 359.45778 * 23 20 19 25 25 H 1.09000 * 109.46786 * 300.00355 * 1 2 3 26 26 H 1.09002 * 109.46864 * 59.99697 * 1 2 3 27 27 H 1.08997 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46786 * 239.99645 * 2 1 3 29 29 H 1.09002 * 109.46864 * 120.00303 * 2 1 3 30 30 H 1.09000 * 109.47546 * 60.00110 * 3 2 1 31 31 H 1.08997 * 109.47061 * 299.99753 * 3 2 1 32 32 H 0.97001 * 119.99782 * 180.02562 * 8 7 5 33 33 H 1.08990 * 109.47074 * 60.00193 * 15 13 4 34 34 H 1.08999 * 109.46834 * 299.99417 * 15 13 4 35 35 H 1.07996 * 120.02380 * 0.02562 * 18 17 16 36 36 H 1.07997 * 119.96962 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47207 * 329.99366 * 21 20 19 38 38 H 1.09007 * 109.47085 * 209.99922 * 21 20 19 39 39 H 1.09005 * 109.47537 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.47493 * 59.99455 * 22 21 20 41 41 H 1.09001 * 109.47152 * 299.99683 * 22 21 20 42 42 H 1.08003 * 119.97301 * 179.70741 * 23 20 19 43 43 H 1.07997 * 120.02631 * 180.24899 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1910 1.5552 1.1810 6 1 5.1327 1.0422 1.3098 7 6 3.6748 2.3294 2.2129 8 7 2.8038 3.2778 1.9503 9 14 4.2189 2.0222 3.9733 10 1 5.6873 2.2170 4.0787 11 1 3.5265 2.9742 4.8786 12 1 3.8749 0.6309 4.3620 13 6 4.1785 1.3314 -1.1628 14 8 3.5716 1.2320 -2.2083 15 6 5.6855 1.3308 -1.1633 16 8 6.1613 1.2034 -2.5049 17 6 7.5085 1.1866 -2.6826 18 6 8.0395 1.0660 -3.9587 19 6 9.4092 1.0486 -4.1367 20 6 10.2509 1.1507 -3.0445 21 6 11.7448 1.1309 -3.2416 22 6 12.2516 2.5603 -3.4436 23 6 9.7242 1.2653 -1.7713 24 6 8.3551 1.2894 -1.5885 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9562 -0.8900 32 1 2.4437 3.8185 2.6706 33 1 6.0487 0.4935 -0.5676 34 1 6.0494 2.2654 -0.7364 35 1 7.3825 0.9857 -4.8120 36 1 9.8231 0.9543 -5.1298 37 1 11.9876 0.5319 -4.1193 38 1 12.2216 0.6972 -2.3625 39 1 13.3322 2.5459 -3.5866 40 1 12.0089 3.1593 -2.5659 41 1 11.7750 2.9940 -4.3226 42 1 10.3837 1.3402 -0.9193 43 1 7.9442 1.3829 -0.5941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299150284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:03 Heat of formation + Delta-G solvation = -62.394885 kcal Electronic energy + Delta-G solvation = -22919.630008 eV Core-core repulsion = 19543.768402 eV Total energy + Delta-G solvation = -3375.861606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97014 -38.65156 -37.30242 -35.08660 -33.48416 -32.88481 -31.45116 -30.89660 -28.98993 -27.64530 -25.69958 -24.38879 -23.49148 -22.55503 -20.95453 -20.52297 -19.21611 -17.90821 -17.25677 -15.88332 -15.61150 -15.49754 -15.41859 -14.70813 -14.43496 -14.23176 -13.95103 -13.74145 -13.63788 -13.31725 -13.23650 -12.92208 -12.55101 -12.37040 -12.08138 -11.78069 -11.59746 -11.44892 -11.29693 -11.15541 -11.01245 -10.98352 -10.72626 -10.61167 -10.48155 -10.42738 -10.26938 -9.79636 -9.18270 -8.85099 -8.49296 -7.81512 -7.64626 -6.50099 -4.18763 1.49651 1.59643 3.03672 3.14053 3.15200 3.41987 3.75824 3.90793 4.03027 4.77182 4.80460 4.83893 4.91486 5.05700 5.18315 5.29085 5.46172 5.47844 5.57472 5.70232 5.74319 5.77060 5.78253 5.86709 5.91274 5.93780 5.99260 6.09361 6.17955 6.18933 6.45434 6.46975 6.52691 6.59052 6.64902 6.73423 6.79996 6.96292 7.06187 7.24414 7.39913 7.77159 7.79711 8.24461 8.94354 9.37697 9.80952 10.50667 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017481 B = 0.003801 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.385447 B = 7364.222144 C = 8615.114051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.432 5.432 5 C -0.353 4.353 6 H 0.090 0.910 7 C 0.048 3.952 8 N -0.852 5.852 9 Si 0.915 3.085 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.470 3.530 14 O -0.586 6.586 15 C 0.061 3.939 16 O -0.293 6.293 17 C 0.138 3.862 18 C -0.154 4.154 19 C -0.080 4.080 20 C -0.135 4.135 21 C -0.077 4.077 22 C -0.147 4.147 23 C -0.077 4.077 24 C -0.209 4.209 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.273 0.727 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.120 0.880 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.524 -3.222 -3.879 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.152 5.152 5 C -0.480 4.480 6 H 0.107 0.893 7 C -0.159 4.159 8 N -0.487 5.487 9 Si 0.740 3.260 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.257 3.743 14 O -0.471 6.471 15 C -0.017 4.017 16 O -0.205 6.205 17 C 0.091 3.909 18 C -0.173 4.173 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.114 4.114 22 C -0.205 4.205 23 C -0.095 4.095 24 C -0.228 4.228 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.138 0.862 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.917 -3.112 -4.413 12.180 hybrid contribution 0.305 -0.032 1.358 1.392 sum 11.223 -3.144 -3.055 12.048 Atomic orbital electron populations 1.21652 0.96464 1.00503 1.01430 1.21846 0.94841 0.99350 1.01392 1.21481 0.80614 0.94703 1.03777 1.43366 1.04964 1.62468 1.04356 1.19400 1.07824 1.29999 0.90814 0.89276 1.25329 0.96825 0.93277 1.00505 1.69937 1.29551 1.15743 1.33507 0.86202 0.79108 0.78638 0.82010 1.19621 1.20732 1.19641 1.19783 0.87706 0.82427 0.84378 1.90569 1.69644 1.55250 1.31587 1.22431 0.95452 1.02752 0.81062 1.86155 1.17712 1.86928 1.29682 1.19192 0.83067 0.94527 0.94098 1.20425 0.95080 1.06615 0.95148 1.20744 0.92066 0.98707 0.98290 1.19708 0.95440 1.05114 0.93268 1.20416 0.91457 0.97452 1.02070 1.21767 1.00232 0.96326 1.02134 1.20778 0.94225 0.97957 0.96517 1.21384 0.94242 1.08339 0.98816 0.92981 0.93070 0.93572 0.92776 0.92337 0.87337 0.92851 0.91707 0.90430 0.89454 0.85279 0.85862 0.91446 0.91444 0.92787 0.92582 0.92615 0.86161 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.14 -2.79 6.22 -26.73 -0.17 -2.96 16 3 C 0.12 2.80 4.90 -4.04 -0.02 2.78 16 4 N -0.43 -10.80 2.56 -114.81 -0.29 -11.10 16 5 C -0.35 -8.62 8.70 -14.94 -0.13 -8.75 16 6 H 0.09 2.03 6.97 -52.48 -0.37 1.67 16 7 C 0.05 1.16 4.92 -17.47 -0.09 1.07 16 8 N -0.85 -21.71 11.34 55.50 0.63 -21.08 16 9 Si 0.91 18.58 29.61 -169.99 -5.03 13.54 16 10 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 13 C 0.47 11.76 7.67 -10.98 -0.08 11.67 16 14 O -0.59 -16.25 16.17 -14.37 -0.23 -16.48 16 15 C 0.06 1.28 3.88 36.01 0.14 1.42 16 16 O -0.29 -6.15 9.67 -39.33 -0.38 -6.53 16 17 C 0.14 2.41 6.69 -39.22 -0.26 2.15 16 18 C -0.15 -2.35 9.99 -39.43 -0.39 -2.74 16 19 C -0.08 -1.01 9.69 -39.61 -0.38 -1.40 16 20 C -0.14 -1.65 5.13 -104.60 -0.54 -2.18 16 21 C -0.08 -0.71 6.06 -27.89 -0.17 -0.88 16 22 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 23 C -0.08 -1.01 9.69 -39.60 -0.38 -1.39 16 24 C -0.21 -3.24 9.04 -39.43 -0.36 -3.60 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.11 2.69 5.35 -51.93 -0.28 2.42 16 31 H 0.05 1.33 7.59 -51.93 -0.39 0.94 16 32 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.08 1.48 7.16 -51.93 -0.37 1.10 16 34 H 0.09 1.77 7.62 -51.93 -0.40 1.37 16 35 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.13 1.97 6.30 -52.49 -0.33 1.64 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -29.15 357.83 -8.78 -37.93 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.76 Total: 6.06 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.10 Total: -7.74 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.34 Total: -32.17 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.61 Total: -23.01 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.15 -8.78 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299150284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.470 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds