Wall clock time and date at job start Tue Mar 31 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 N 1.46506 * 109.46969 * 180.02562 * 3 2 1 5 5 C 1.37102 * 119.99880 * 269.99990 * 4 3 2 6 6 H 1.08003 * 119.99563 * 140.69695 * 5 4 3 7 7 C 1.38945 * 120.00196 * 320.70014 * 5 4 3 8 8 N 1.31408 * 120.00008 * 159.03681 * 7 5 4 9 9 Si 1.86801 * 120.00000 * 339.03530 * 7 5 4 10 10 H 1.48496 * 109.47372 * 95.81606 * 9 7 5 11 11 H 1.48503 * 109.47208 * 215.82007 * 9 7 5 12 12 H 1.48506 * 109.47009 * 335.81637 * 9 7 5 13 13 C 1.34774 * 119.99879 * 90.00305 * 4 3 2 14 14 O 1.21292 * 119.99908 * 5.01100 * 13 4 3 15 15 C 1.50697 * 119.99630 * 185.01308 * 13 4 3 16 16 C 1.53008 * 109.46955 * 185.43097 * 15 13 4 17 17 C 1.50698 * 109.47285 * 179.22871 * 16 15 13 18 18 C 1.38289 * 119.97197 * 270.02203 * 17 16 15 19 19 C 1.38235 * 120.11317 * 180.02562 * 18 17 16 20 20 C 1.38169 * 120.05652 * 359.68091 * 19 18 17 21 21 C 1.38708 * 119.94311 * 0.56951 * 20 19 18 22 22 O 1.35899 * 120.05898 * 179.72137 * 21 20 19 23 23 C 1.42899 * 116.99749 * 359.72906 * 22 21 20 24 24 C 1.38125 * 119.97427 * 89.99539 * 17 16 15 25 25 H 1.09008 * 109.46767 * 300.00221 * 1 2 3 26 26 H 1.08998 * 109.47042 * 59.99740 * 1 2 3 27 27 H 1.08993 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47248 * 239.99891 * 2 1 3 29 29 H 1.09003 * 109.47299 * 120.00680 * 2 1 3 30 30 H 1.09001 * 109.47200 * 60.00502 * 3 2 1 31 31 H 1.08998 * 109.47260 * 300.00126 * 3 2 1 32 32 H 0.97002 * 120.00034 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47609 * 65.43385 * 15 13 4 34 34 H 1.09004 * 109.47248 * 305.42774 * 15 13 4 35 35 H 1.08994 * 109.47118 * 59.22353 * 16 15 13 36 36 H 1.09001 * 109.46622 * 299.22668 * 16 15 13 37 37 H 1.08002 * 119.94313 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.97556 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.02775 * 180.29368 * 20 19 18 40 40 H 1.09005 * 109.47347 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47216 * 299.99683 * 23 22 21 42 42 H 1.09001 * 109.47208 * 60.00098 * 23 22 21 43 43 H 1.07995 * 120.02802 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.4421 1.1864 6 1 5.0879 0.8496 1.2917 7 6 3.7325 2.2041 2.2540 8 7 4.1089 1.9127 3.4788 9 14 2.5811 3.6429 1.9481 10 1 1.1762 3.2024 2.1412 11 1 2.8923 4.7375 2.9022 12 1 2.7596 4.1328 0.5576 13 6 4.1784 1.4426 -1.1681 14 8 3.5750 1.5346 -2.2162 15 6 5.6811 1.3284 -1.1712 16 6 6.2018 1.4888 -2.6010 17 6 7.7058 1.3936 -2.6015 18 6 8.4703 2.5347 -2.4411 19 6 9.8501 2.4508 -2.4417 20 6 10.4688 1.2250 -2.5961 21 6 9.7043 0.0797 -2.7624 22 8 10.3104 -1.1264 -2.9202 23 6 11.7393 -1.1405 -2.9106 24 6 8.3195 0.1666 -2.7618 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7891 2.4449 4.2241 33 1 5.9721 0.3511 -0.7861 34 1 6.1061 2.1089 -0.5400 35 1 5.8991 2.4605 -2.9910 36 1 5.7875 0.7001 -3.2290 37 1 7.9886 3.4931 -2.3151 38 1 10.4451 3.3434 -2.3166 39 1 11.5468 1.1594 -2.5917 40 1 12.0936 -2.1625 -3.0451 41 1 12.1143 -0.5159 -3.7214 42 1 12.1001 -0.7538 -1.9574 43 1 7.7220 -0.7243 -2.8870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299153363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:21 Heat of formation + Delta-G solvation = -57.321841 kcal Electronic energy + Delta-G solvation = -22983.245087 eV Core-core repulsion = 19607.603465 eV Total energy + Delta-G solvation = -3375.641622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10471 -38.92833 -37.59414 -35.39630 -33.38377 -32.86001 -31.61057 -30.55238 -29.16629 -27.35852 -26.11991 -24.98822 -23.45557 -22.40952 -21.20140 -20.54202 -18.90856 -17.68736 -16.84728 -16.25038 -16.11962 -15.90194 -15.77658 -15.31811 -14.64144 -14.21434 -14.05462 -13.89225 -13.56921 -13.16885 -12.96373 -12.90710 -12.70478 -12.29047 -12.05841 -11.94790 -11.70046 -11.46298 -11.42934 -11.30287 -10.97184 -10.87567 -10.81958 -10.69511 -10.42787 -10.32859 -10.04389 -9.76205 -9.17090 -8.75943 -8.48180 -8.10701 -7.75472 -6.48516 -4.08991 1.42539 1.55560 3.05223 3.21409 3.23754 3.30501 3.75264 3.84970 4.12991 4.42662 4.79257 4.88429 4.98237 4.99818 5.02339 5.22067 5.31268 5.45565 5.48932 5.59227 5.61849 5.65064 5.78660 5.82669 5.88171 6.04148 6.09294 6.19613 6.30968 6.36196 6.37829 6.44454 6.45309 6.48003 6.56145 6.72991 6.77308 6.83028 6.91636 6.93741 7.40555 7.42705 8.09371 8.25594 8.95851 9.36479 9.71111 10.62243 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.003742 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.585596 B = 7480.314948 C = 7974.286334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.467 5.467 5 C -0.345 4.345 6 H 0.104 0.896 7 C 0.069 3.931 8 N -0.860 5.860 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.482 3.518 14 O -0.601 6.601 15 C -0.112 4.112 16 C -0.067 4.067 17 C -0.030 4.030 18 C -0.151 4.151 19 C -0.080 4.080 20 C -0.219 4.219 21 C 0.124 3.876 22 O -0.319 6.319 23 C 0.029 3.971 24 C -0.148 4.148 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.275 0.725 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.650 -1.861 -8.985 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.021 4.021 4 N -0.187 5.187 5 C -0.472 4.472 6 H 0.121 0.879 7 C -0.138 4.138 8 N -0.495 5.495 9 Si 0.702 3.298 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.186 1.186 13 C 0.272 3.728 14 O -0.487 6.487 15 C -0.152 4.152 16 C -0.104 4.104 17 C -0.031 4.031 18 C -0.170 4.170 19 C -0.099 4.099 20 C -0.238 4.238 21 C 0.079 3.921 22 O -0.233 6.233 23 C -0.066 4.066 24 C -0.166 4.166 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.265 -1.967 -9.285 13.264 hybrid contribution -0.208 0.882 0.383 0.984 sum 9.058 -1.084 -8.902 12.746 Atomic orbital electron populations 1.21709 0.96404 1.01051 1.01361 1.21764 0.94758 0.97992 1.02423 1.21617 0.82861 0.96582 1.01006 1.43755 1.03854 1.65268 1.05809 1.19059 1.11887 1.28616 0.87591 0.87863 1.25323 0.96790 0.97002 0.94694 1.69763 1.43764 1.37652 0.98342 0.86963 0.80585 0.82996 0.79260 1.20125 1.21513 1.18550 1.20458 0.89623 0.79307 0.83457 1.90530 1.70679 1.55456 1.32000 1.21330 0.93524 1.04192 0.96159 1.20424 0.88564 1.03882 0.97567 1.19867 0.96302 0.92024 0.94868 1.21033 0.93528 0.98628 1.03779 1.20885 0.94685 0.96733 0.97553 1.21135 0.99590 0.92883 1.10147 1.18998 0.92385 0.84103 0.96584 1.86068 1.21279 1.28107 1.87840 1.23008 0.78798 1.03551 1.01274 1.20345 0.91177 0.98491 1.06636 0.93016 0.93047 0.93026 0.92213 0.91216 0.91944 0.91375 0.91523 0.89837 0.88948 0.90420 0.90436 0.85733 0.86021 0.85939 0.88483 0.92879 0.92730 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.56 6.26 -26.73 -0.17 -2.73 16 3 C 0.10 2.29 4.24 -4.04 -0.02 2.28 16 4 N -0.47 -11.23 2.14 -114.81 -0.25 -11.48 16 5 C -0.34 -8.88 8.93 -14.93 -0.13 -9.01 16 6 H 0.10 2.78 7.44 -52.48 -0.39 2.39 16 7 C 0.07 1.82 5.32 -17.47 -0.09 1.73 16 8 N -0.86 -23.59 13.96 55.50 0.77 -22.82 16 9 Si 0.87 20.56 25.01 -169.99 -4.25 16.30 16 10 H -0.27 -6.21 6.71 56.52 0.38 -5.83 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.48 11.09 7.62 -10.99 -0.08 11.00 16 14 O -0.60 -14.77 15.54 5.55 0.09 -14.69 16 15 C -0.11 -2.17 4.33 -27.88 -0.12 -2.29 16 16 C -0.07 -1.11 4.64 -27.88 -0.13 -1.24 16 17 C -0.03 -0.46 5.13 -104.65 -0.54 -1.00 16 18 C -0.15 -2.10 9.70 -39.56 -0.38 -2.49 16 19 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 20 C -0.22 -2.68 9.04 -39.43 -0.36 -3.04 16 21 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 22 O -0.32 -4.12 10.50 -19.42 -0.20 -4.32 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C -0.15 -2.20 9.64 -39.43 -0.38 -2.58 16 25 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.06 1.43 3.41 -51.93 -0.18 1.26 16 31 H 0.07 1.52 7.36 -51.93 -0.38 1.14 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 34 H 0.09 1.81 7.86 -51.93 -0.41 1.40 16 35 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 42 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 43 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -29.81 352.54 -6.93 -36.74 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.70 Total: 5.00 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.70 Total: -10.06 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.53 Total: -34.30 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.12 Total: -19.01 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.25 Total: 16.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.81 -6.93 -36.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299153363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.578 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds