Wall clock time and date at job start Tue Mar 31 2020 06:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47351 * 2 1 4 4 N 1.46506 * 109.46969 * 180.02562 * 3 2 1 5 5 C 1.37102 * 119.99880 * 269.99990 * 4 3 2 6 6 H 1.08003 * 119.99563 * 140.69695 * 5 4 3 7 7 C 1.38945 * 120.00196 * 320.70014 * 5 4 3 8 8 N 1.31408 * 120.00008 * 159.03681 * 7 5 4 9 9 Si 1.86801 * 120.00000 * 339.03530 * 7 5 4 10 10 H 1.48496 * 109.47372 * 95.81606 * 9 7 5 11 11 H 1.48503 * 109.47208 * 215.82007 * 9 7 5 12 12 H 1.48506 * 109.47009 * 335.81637 * 9 7 5 13 13 C 1.34774 * 119.99879 * 90.00305 * 4 3 2 14 14 O 1.21292 * 119.99908 * 5.01100 * 13 4 3 15 15 C 1.50697 * 119.99630 * 185.01308 * 13 4 3 16 16 C 1.53008 * 109.46955 * 185.43097 * 15 13 4 17 17 C 1.50698 * 109.47285 * 179.22871 * 16 15 13 18 18 C 1.38289 * 119.97197 * 270.02203 * 17 16 15 19 19 C 1.38235 * 120.11317 * 180.02562 * 18 17 16 20 20 C 1.38169 * 120.05652 * 359.68091 * 19 18 17 21 21 C 1.38708 * 119.94311 * 0.56951 * 20 19 18 22 22 O 1.35899 * 120.05898 * 179.72137 * 21 20 19 23 23 C 1.42899 * 116.99749 * 359.72906 * 22 21 20 24 24 C 1.38125 * 119.97427 * 89.99539 * 17 16 15 25 25 H 1.09008 * 109.46767 * 300.00221 * 1 2 3 26 26 H 1.08998 * 109.47042 * 59.99740 * 1 2 3 27 27 H 1.08993 * 109.47441 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47248 * 239.99891 * 2 1 3 29 29 H 1.09003 * 109.47299 * 120.00680 * 2 1 3 30 30 H 1.09001 * 109.47200 * 60.00502 * 3 2 1 31 31 H 1.08998 * 109.47260 * 300.00126 * 3 2 1 32 32 H 0.97002 * 120.00034 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47609 * 65.43385 * 15 13 4 34 34 H 1.09004 * 109.47248 * 305.42774 * 15 13 4 35 35 H 1.08994 * 109.47118 * 59.22353 * 16 15 13 36 36 H 1.09001 * 109.46622 * 299.22668 * 16 15 13 37 37 H 1.08002 * 119.94313 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.97556 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.02775 * 180.29368 * 20 19 18 40 40 H 1.09005 * 109.47347 * 179.97438 * 23 22 21 41 41 H 1.09000 * 109.47216 * 299.99683 * 23 22 21 42 42 H 1.09001 * 109.47208 * 60.00098 * 23 22 21 43 43 H 1.07995 * 120.02802 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.4421 1.1864 6 1 5.0879 0.8496 1.2917 7 6 3.7325 2.2041 2.2540 8 7 4.1089 1.9127 3.4788 9 14 2.5811 3.6429 1.9481 10 1 1.1762 3.2024 2.1412 11 1 2.8923 4.7375 2.9022 12 1 2.7596 4.1328 0.5576 13 6 4.1784 1.4426 -1.1681 14 8 3.5750 1.5346 -2.2162 15 6 5.6811 1.3284 -1.1712 16 6 6.2018 1.4888 -2.6010 17 6 7.7058 1.3936 -2.6015 18 6 8.4703 2.5347 -2.4411 19 6 9.8501 2.4508 -2.4417 20 6 10.4688 1.2250 -2.5961 21 6 9.7043 0.0797 -2.7624 22 8 10.3104 -1.1264 -2.9202 23 6 11.7393 -1.1405 -2.9106 24 6 8.3195 0.1666 -2.7618 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7891 2.4449 4.2241 33 1 5.9721 0.3511 -0.7861 34 1 6.1061 2.1089 -0.5400 35 1 5.8991 2.4605 -2.9910 36 1 5.7875 0.7001 -3.2290 37 1 7.9886 3.4931 -2.3151 38 1 10.4451 3.3434 -2.3166 39 1 11.5468 1.1594 -2.5917 40 1 12.0936 -2.1625 -3.0451 41 1 12.1143 -0.5159 -3.7214 42 1 12.1001 -0.7538 -1.9574 43 1 7.7220 -0.7243 -2.8870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299153363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:20 Heat of formation + Delta-G solvation = -73.157850 kcal Electronic energy + Delta-G solvation = -22983.931788 eV Core-core repulsion = 19607.603465 eV Total energy + Delta-G solvation = -3376.328323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15215 -40.68910 -38.64199 -37.20886 -34.92371 -34.42093 -33.47778 -31.57697 -30.42521 -28.16298 -27.65296 -26.87350 -24.89144 -23.44031 -22.71586 -21.73154 -20.81915 -18.77572 -18.66825 -17.92466 -17.29891 -17.11423 -16.91213 -16.60951 -16.26804 -15.83136 -15.70713 -15.14312 -14.84493 -14.61053 -14.43735 -14.23028 -14.04336 -13.65400 -13.62271 -13.30186 -13.16010 -12.82152 -12.75905 -12.59510 -12.49338 -12.37308 -12.14834 -11.95094 -11.91324 -11.84446 -11.63824 -11.53182 -11.05873 -10.49005 -9.74315 -9.70125 -9.12628 -8.52176 -6.14658 0.36843 0.51602 1.17719 1.30267 1.41723 1.88259 2.17354 2.38626 2.59953 2.83405 2.98855 3.80391 3.90587 3.96839 4.11270 4.14883 4.20727 4.30628 4.35011 4.38159 4.41577 4.42123 4.49558 4.55557 4.57772 4.65796 4.71326 4.75293 4.84582 4.93303 5.01916 5.09458 5.13859 5.22539 5.23969 5.32293 5.36253 5.50981 5.52030 5.73297 5.85634 6.06620 6.26571 6.49497 6.94803 7.40994 7.78317 8.62077 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.003742 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.585596 B = 7480.314948 C = 7974.286334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.095 3.905 4 N -0.477 5.477 5 C -0.342 4.342 6 H 0.083 0.917 7 C 0.035 3.965 8 N -0.894 5.894 9 Si 0.923 3.077 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.476 3.524 14 O -0.616 6.616 15 C -0.103 4.103 16 C -0.054 4.054 17 C -0.045 4.045 18 C -0.164 4.164 19 C -0.078 4.078 20 C -0.214 4.214 21 C 0.115 3.885 22 O -0.339 6.339 23 C 0.018 3.982 24 C -0.168 4.168 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.280 0.720 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.390 -1.320 -9.511 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.028 4.028 4 N -0.198 5.198 5 C -0.469 4.469 6 H 0.101 0.899 7 C -0.170 4.170 8 N -0.531 5.531 9 Si 0.749 3.251 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.267 3.733 14 O -0.503 6.503 15 C -0.143 4.143 16 C -0.092 4.092 17 C -0.045 4.045 18 C -0.182 4.182 19 C -0.095 4.095 20 C -0.232 4.232 21 C 0.070 3.930 22 O -0.254 6.254 23 C -0.076 4.076 24 C -0.187 4.187 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.135 0.865 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.003 -1.436 -9.811 14.085 hybrid contribution -0.322 0.641 0.499 0.874 sum 9.681 -0.795 -9.313 13.456 Atomic orbital electron populations 1.21680 0.93274 1.02889 1.02062 1.21695 0.97477 0.95799 1.01349 1.21765 0.81990 0.98366 1.00635 1.43900 1.04710 1.65672 1.05531 1.18916 1.11530 1.28251 0.88215 0.89906 1.25799 0.98235 0.98576 0.94361 1.69818 1.45425 1.38795 0.99075 0.86190 0.79986 0.80504 0.78462 1.18386 1.20891 1.19583 1.21048 0.91025 0.78323 0.82908 1.90507 1.71435 1.56004 1.32366 1.21281 0.91061 1.03930 0.98035 1.20245 0.90078 1.03382 0.95446 1.19703 0.95158 0.92895 0.96731 1.21227 0.94552 0.98419 1.04015 1.21251 0.94172 0.98011 0.96095 1.21498 1.01096 0.92134 1.08514 1.19125 0.92203 0.85164 0.96469 1.86044 1.23805 1.27822 1.87694 1.23343 0.76426 1.05440 1.02366 1.20404 0.92237 0.98244 1.07789 0.92630 0.92013 0.90690 0.92864 0.92648 0.92353 0.91465 0.91024 0.89869 0.89332 0.90720 0.91085 0.85048 0.82939 0.82944 0.86477 0.91396 0.91808 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.91 71.98 0.71 -3.52 16 2 C -0.12 -4.82 6.26 30.59 0.19 -4.63 16 3 C 0.09 4.22 4.24 86.38 0.37 4.59 16 4 N -0.48 -23.24 2.14 -635.53 -1.36 -24.60 16 5 C -0.34 -17.93 8.93 84.04 0.75 -17.18 16 6 H 0.08 4.61 7.44 -2.91 -0.02 4.59 16 7 C 0.03 1.84 5.32 84.93 0.45 2.29 16 8 N -0.89 -49.38 13.96 21.66 0.30 -49.08 16 9 Si 0.92 41.98 25.01 68.60 1.72 43.69 16 10 H -0.26 -11.00 6.71 99.48 0.67 -10.33 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.48 22.26 7.62 87.66 0.67 22.92 16 14 O -0.62 -30.55 15.54 -3.07 -0.05 -30.60 16 15 C -0.10 -4.10 4.33 29.85 0.13 -3.97 16 16 C -0.05 -1.83 4.64 29.85 0.14 -1.70 16 17 C -0.04 -1.36 5.13 -19.88 -0.10 -1.46 16 18 C -0.16 -4.39 9.70 22.28 0.22 -4.18 16 19 C -0.08 -1.72 10.04 22.25 0.22 -1.50 16 20 C -0.21 -4.72 9.04 22.37 0.20 -4.52 16 21 C 0.12 3.09 6.69 22.51 0.15 3.24 16 22 O -0.34 -8.37 10.50 -92.41 -0.97 -9.34 16 23 C 0.02 0.26 9.81 113.37 1.11 1.37 16 24 C -0.17 -5.06 9.64 22.37 0.22 -4.84 16 25 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.62 3.41 -2.39 -0.01 2.62 16 31 H 0.07 2.97 7.36 -2.39 -0.02 2.96 16 32 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 33 H 0.08 3.28 8.04 -2.39 -0.02 3.26 16 34 H 0.09 3.57 7.86 -2.38 -0.02 3.55 16 35 H 0.07 2.55 8.08 -2.39 -0.02 2.53 16 36 H 0.07 2.47 8.00 -2.39 -0.02 2.45 16 37 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 40 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.07 0.77 7.67 -2.39 -0.02 0.75 16 42 H 0.06 0.80 7.65 -2.39 -0.02 0.78 16 43 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -63.73 352.54 6.01 -57.72 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.95 Total: 25.27 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: 5.43 Total: -13.07 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.06 Total: -73.68 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.02 Total: -39.94 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.72 Total: 43.69 kcal Total: -63.73 6.01 -57.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299153363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.434 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds