Wall clock time and date at job start Tue Mar 31 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47127 * 2 1 4 4 N 1.46506 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.37094 * 119.99759 * 271.20362 * 4 3 2 6 6 H 1.08004 * 120.00086 * 183.97925 * 5 4 3 7 7 C 1.38955 * 120.00537 * 3.97875 * 5 4 3 8 8 N 1.31412 * 119.99816 * 31.53645 * 7 5 4 9 9 Si 1.86799 * 120.00123 * 211.54131 * 7 5 4 10 10 H 1.48498 * 109.47301 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47336 * 119.99912 * 9 7 5 12 12 H 1.48501 * 109.46964 * 239.99898 * 9 7 5 13 13 C 1.34776 * 119.99961 * 91.19653 * 4 3 2 14 14 O 1.21290 * 119.99650 * 185.61656 * 13 4 3 15 15 C 1.50695 * 120.00067 * 5.62038 * 13 4 3 16 16 H 1.09000 * 109.47319 * 322.73960 * 15 13 4 17 17 O 1.42899 * 109.47314 * 202.73626 * 15 13 4 18 18 C 1.42901 * 113.99929 * 149.99889 * 17 15 13 19 19 C 1.53005 * 109.46916 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47154 * 82.73617 * 15 13 4 21 21 C 1.38234 * 120.00136 * 72.52752 * 20 15 13 22 22 C 1.38236 * 120.00539 * 179.80960 * 21 20 15 23 23 C 1.38235 * 119.99596 * 0.39907 * 22 21 20 24 24 C 1.38236 * 120.00245 * 359.85568 * 23 22 21 25 25 C 1.38233 * 120.00060 * 252.80287 * 20 15 13 26 26 H 1.08999 * 109.47583 * 300.00037 * 1 2 3 27 27 H 1.09010 * 109.46667 * 60.00238 * 1 2 3 28 28 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47583 * 239.99963 * 2 1 3 30 30 H 1.09000 * 109.46653 * 119.99861 * 2 1 3 31 31 H 1.08995 * 109.47285 * 59.99864 * 3 2 1 32 32 H 1.09000 * 109.47240 * 299.99501 * 3 2 1 33 33 H 0.96999 * 120.00146 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47230 * 299.99947 * 18 17 15 35 35 H 1.09000 * 109.47200 * 60.00366 * 18 17 15 36 36 H 1.09001 * 109.46795 * 299.99807 * 19 18 17 37 37 H 1.09000 * 109.47220 * 59.99971 * 19 18 17 38 38 H 1.08994 * 109.46774 * 180.02562 * 19 18 17 39 39 H 1.08005 * 119.99702 * 0.02562 * 21 20 15 40 40 H 1.07993 * 120.00443 * 180.23283 * 22 21 20 41 41 H 1.08004 * 120.00180 * 179.83660 * 23 22 21 42 42 H 1.07999 * 120.00596 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00216 * 359.97438 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.4177 1.1879 6 1 5.2680 1.4826 1.1909 7 6 3.4972 1.3092 2.3876 8 7 2.3666 0.6410 2.4354 9 14 4.1730 2.1131 3.9324 10 1 5.4508 2.7998 3.6147 11 1 3.1923 3.1035 4.4446 12 1 4.4135 1.0745 4.9662 13 6 4.1794 1.4667 -1.1660 14 8 5.3879 1.3640 -1.1701 15 6 3.4319 1.6215 -2.4654 16 1 2.4921 1.0719 -2.4116 17 8 4.2252 1.1049 -3.5358 18 6 3.4621 0.5738 -4.6210 19 6 4.4094 0.0516 -5.7031 20 6 3.1469 3.0809 -2.7102 21 6 4.1724 3.9340 -3.0727 22 6 3.9104 5.2719 -3.3012 23 6 2.6243 5.7584 -3.1591 24 6 1.5997 4.9064 -2.7914 25 6 1.8611 3.5676 -2.5667 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.8829 0.5655 3.2727 34 1 2.8375 -0.2434 -4.2602 35 1 2.8299 1.3575 -5.0384 36 1 5.0343 0.8686 -6.0639 37 1 5.0413 -0.7321 -5.2854 38 1 3.8273 -0.3531 -6.5310 39 1 5.1778 3.5545 -3.1809 40 1 4.7109 5.9377 -3.5881 41 1 2.4200 6.8042 -3.3350 42 1 0.5950 5.2865 -2.6800 43 1 1.0606 2.9019 -2.2796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299214398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:54 Heat of formation + Delta-G solvation = -42.874160 kcal Electronic energy + Delta-G solvation = -24556.202723 eV Core-core repulsion = 21181.187599 eV Total energy + Delta-G solvation = -3375.015124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79146 -38.08372 -37.11200 -35.23554 -32.56646 -31.95889 -31.32171 -30.66494 -30.32505 -26.86433 -25.60102 -24.10030 -22.79231 -22.15581 -21.42222 -20.68376 -19.10484 -17.07780 -16.92840 -16.29658 -15.89192 -15.57519 -14.79761 -14.64315 -14.29938 -14.09907 -13.81106 -13.65988 -13.29758 -13.13305 -12.91239 -12.45816 -12.38420 -12.22289 -11.91258 -11.72709 -11.63000 -11.37608 -11.05956 -11.02043 -10.94658 -10.73102 -10.62967 -10.36375 -10.32110 -10.09264 -9.59994 -9.41348 -8.84422 -8.76793 -8.62148 -8.02414 -7.77992 -6.36476 -3.73766 1.56309 1.68878 3.12873 3.27337 3.35174 3.68219 3.87522 4.06453 4.25196 4.90813 5.04829 5.06491 5.17416 5.20522 5.25299 5.34386 5.40981 5.53538 5.62006 5.69252 5.76916 5.86825 5.88549 5.95224 5.99331 6.07076 6.16159 6.24311 6.24884 6.32528 6.33923 6.60048 6.69624 6.75971 6.77975 6.85254 6.88491 7.23231 7.25888 7.47069 7.50011 7.86578 8.09824 8.53320 9.19340 9.42132 9.99137 10.59206 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.006171 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.013943 B = 4536.132056 C = 4973.022836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C 0.124 3.876 4 N -0.435 5.435 5 C -0.309 4.309 6 H 0.106 0.894 7 C 0.037 3.963 8 N -0.853 5.853 9 Si 0.909 3.091 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.449 3.551 14 O -0.571 6.571 15 C 0.122 3.878 16 H 0.077 0.923 17 O -0.351 6.351 18 C 0.053 3.947 19 C -0.147 4.147 20 C -0.096 4.096 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.111 4.111 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 4.147 -10.631 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.000 4.000 4 N -0.154 5.154 5 C -0.436 4.436 6 H 0.124 0.876 7 C -0.167 4.167 8 N -0.492 5.492 9 Si 0.735 3.265 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.236 3.764 14 O -0.454 6.454 15 C 0.060 3.940 16 H 0.095 0.905 17 O -0.269 6.269 18 C -0.024 4.024 19 C -0.205 4.205 20 C -0.097 4.097 21 C -0.100 4.100 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.129 4.129 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.477 4.039 -10.472 12.489 hybrid contribution -0.343 0.337 0.842 0.969 sum -5.819 4.376 -9.630 12.073 Atomic orbital electron populations 1.21601 0.97436 1.00095 1.00267 1.22171 0.93826 0.98221 1.03324 1.21567 0.80839 0.97116 1.00458 1.43730 1.05151 1.62005 1.04483 1.19708 0.93614 1.48824 0.81474 0.87621 1.25125 0.96340 0.96229 0.98990 1.70117 1.17605 1.34229 1.27250 0.86159 0.79453 0.79633 0.81272 1.19200 1.20596 1.20940 1.19298 0.87967 0.85509 0.83587 1.90520 1.13969 1.54875 1.86045 1.20790 0.94626 0.90195 0.88343 0.90519 1.88046 1.32177 1.78848 1.27788 1.22530 0.94598 0.96879 0.88437 1.21698 0.99941 1.01785 0.97029 1.20201 0.93696 0.95926 0.99901 1.21069 0.99533 0.92813 0.96582 1.21126 0.96731 0.95480 1.01076 1.21092 0.93243 0.99300 1.00450 1.21023 0.99043 0.93502 1.00769 1.21094 0.96003 0.95976 0.99791 0.92762 0.94827 0.93972 0.95626 0.86037 0.89404 0.94241 0.92301 0.93562 0.93708 0.91961 0.91739 0.91487 0.85356 0.86275 0.86483 0.86245 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.83 5.61 -26.73 -0.15 -2.98 16 3 C 0.12 2.71 4.28 -4.04 -0.02 2.69 16 4 N -0.43 -11.12 2.62 -114.81 -0.30 -11.42 16 5 C -0.31 -8.56 9.40 -14.93 -0.14 -8.71 16 6 H 0.11 3.14 7.36 -52.48 -0.39 2.76 16 7 C 0.04 0.94 4.78 -17.47 -0.08 0.86 16 8 N -0.85 -21.16 8.38 55.50 0.47 -20.70 16 9 Si 0.91 20.28 29.65 -169.99 -5.04 15.24 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.45 11.44 6.74 -10.99 -0.07 11.37 16 14 O -0.57 -16.70 16.25 -13.25 -0.22 -16.92 16 15 C 0.12 2.48 1.98 -29.04 -0.06 2.43 16 16 H 0.08 1.44 5.73 -51.93 -0.30 1.15 16 17 O -0.35 -6.99 9.23 -54.03 -0.50 -7.49 16 18 C 0.05 0.79 6.46 37.16 0.24 1.03 16 19 C -0.15 -1.83 10.28 37.16 0.38 -1.45 16 20 C -0.10 -1.77 4.80 -104.63 -0.50 -2.27 16 21 C -0.08 -1.47 9.29 -39.58 -0.37 -1.84 16 22 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 23 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 24 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 25 C -0.11 -1.75 8.61 -39.58 -0.34 -2.10 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.52 7.74 -51.93 -0.40 0.12 16 30 H 0.12 2.91 5.69 -51.93 -0.30 2.62 16 31 H 0.09 2.06 6.28 -51.93 -0.33 1.74 16 32 H 0.04 0.76 3.38 -51.93 -0.18 0.58 16 33 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 34 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.13 2.47 7.99 -52.48 -0.42 2.05 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.77 6.53 -52.49 -0.34 1.42 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -30.70 348.00 -8.71 -39.41 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.43 Total: 5.97 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.94 Total: -9.35 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.16 Total: -32.12 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.71 Total: -24.40 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.04 Total: 15.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.70 -8.71 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299214398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.462 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds