Wall clock time and date at job start Tue Mar 31 2020 06:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47127 * 2 1 4 4 N 1.46506 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.37094 * 119.99759 * 271.20362 * 4 3 2 6 6 H 1.08004 * 120.00086 * 183.97925 * 5 4 3 7 7 C 1.38955 * 120.00537 * 3.97875 * 5 4 3 8 8 N 1.31412 * 119.99816 * 31.53645 * 7 5 4 9 9 Si 1.86799 * 120.00123 * 211.54131 * 7 5 4 10 10 H 1.48498 * 109.47301 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47336 * 119.99912 * 9 7 5 12 12 H 1.48501 * 109.46964 * 239.99898 * 9 7 5 13 13 C 1.34776 * 119.99961 * 91.19653 * 4 3 2 14 14 O 1.21290 * 119.99650 * 185.61656 * 13 4 3 15 15 C 1.50695 * 120.00067 * 5.62038 * 13 4 3 16 16 H 1.09000 * 109.47319 * 322.73960 * 15 13 4 17 17 O 1.42899 * 109.47314 * 202.73626 * 15 13 4 18 18 C 1.42901 * 113.99929 * 149.99889 * 17 15 13 19 19 C 1.53005 * 109.46916 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47154 * 82.73617 * 15 13 4 21 21 C 1.38234 * 120.00136 * 72.52752 * 20 15 13 22 22 C 1.38236 * 120.00539 * 179.80960 * 21 20 15 23 23 C 1.38235 * 119.99596 * 0.39907 * 22 21 20 24 24 C 1.38236 * 120.00245 * 359.85568 * 23 22 21 25 25 C 1.38233 * 120.00060 * 252.80287 * 20 15 13 26 26 H 1.08999 * 109.47583 * 300.00037 * 1 2 3 27 27 H 1.09010 * 109.46667 * 60.00238 * 1 2 3 28 28 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47583 * 239.99963 * 2 1 3 30 30 H 1.09000 * 109.46653 * 119.99861 * 2 1 3 31 31 H 1.08995 * 109.47285 * 59.99864 * 3 2 1 32 32 H 1.09000 * 109.47240 * 299.99501 * 3 2 1 33 33 H 0.96999 * 120.00146 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47230 * 299.99947 * 18 17 15 35 35 H 1.09000 * 109.47200 * 60.00366 * 18 17 15 36 36 H 1.09001 * 109.46795 * 299.99807 * 19 18 17 37 37 H 1.09000 * 109.47220 * 59.99971 * 19 18 17 38 38 H 1.08994 * 109.46774 * 180.02562 * 19 18 17 39 39 H 1.08005 * 119.99702 * 0.02562 * 21 20 15 40 40 H 1.07993 * 120.00443 * 180.23283 * 22 21 20 41 41 H 1.08004 * 120.00180 * 179.83660 * 23 22 21 42 42 H 1.07999 * 120.00596 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.00216 * 359.97438 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1899 1.4177 1.1879 6 1 5.2680 1.4826 1.1909 7 6 3.4972 1.3092 2.3876 8 7 2.3666 0.6410 2.4354 9 14 4.1730 2.1131 3.9324 10 1 5.4508 2.7998 3.6147 11 1 3.1923 3.1035 4.4446 12 1 4.4135 1.0745 4.9662 13 6 4.1794 1.4667 -1.1660 14 8 5.3879 1.3640 -1.1701 15 6 3.4319 1.6215 -2.4654 16 1 2.4921 1.0719 -2.4116 17 8 4.2252 1.1049 -3.5358 18 6 3.4621 0.5738 -4.6210 19 6 4.4094 0.0516 -5.7031 20 6 3.1469 3.0809 -2.7102 21 6 4.1724 3.9340 -3.0727 22 6 3.9104 5.2719 -3.3012 23 6 2.6243 5.7584 -3.1591 24 6 1.5997 4.9064 -2.7914 25 6 1.8611 3.5676 -2.5667 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.8829 0.5655 3.2727 34 1 2.8375 -0.2434 -4.2602 35 1 2.8299 1.3575 -5.0384 36 1 5.0343 0.8686 -6.0639 37 1 5.0413 -0.7321 -5.2854 38 1 3.8273 -0.3531 -6.5310 39 1 5.1778 3.5545 -3.1809 40 1 4.7109 5.9377 -3.5881 41 1 2.4200 6.8042 -3.3350 42 1 0.5950 5.2865 -2.6800 43 1 1.0606 2.9019 -2.2796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299214398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:53 Heat of formation + Delta-G solvation = -59.342654 kcal Electronic energy + Delta-G solvation = -24556.916850 eV Core-core repulsion = 21181.187599 eV Total energy + Delta-G solvation = -3375.729251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33729 -39.61689 -38.56277 -37.17011 -34.29421 -33.42945 -33.06747 -31.86206 -31.50862 -28.51883 -27.23621 -25.89630 -23.96914 -23.32667 -22.79912 -22.29983 -20.85622 -18.89165 -18.47899 -17.84484 -17.47106 -16.79878 -16.67634 -15.99228 -15.80603 -15.50260 -15.45160 -15.31002 -14.98344 -14.35081 -14.26488 -13.92863 -13.78918 -13.57647 -13.34821 -13.21966 -13.09312 -12.81005 -12.67817 -12.59275 -12.24302 -12.15601 -12.11189 -12.07616 -11.95962 -11.76671 -11.31645 -10.84480 -10.78228 -10.31237 -9.83197 -9.72585 -9.59413 -8.34166 -5.81833 0.35375 0.49799 1.31150 1.41699 1.54232 1.91440 2.18665 2.52038 2.81434 2.97865 3.37044 3.65652 3.87407 3.99821 4.11166 4.14613 4.19151 4.24637 4.36108 4.38364 4.44380 4.52625 4.59446 4.64978 4.71784 4.81276 4.85788 4.99236 5.02391 5.04643 5.14596 5.19636 5.23203 5.34993 5.45256 5.53511 5.58305 5.59684 5.64978 5.95316 6.04454 6.10023 6.23928 6.57705 7.18396 7.44840 8.03572 8.58360 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.006171 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.013943 B = 4536.132056 C = 4973.022836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 C 0.127 3.873 4 N -0.440 5.440 5 C -0.360 4.360 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.847 5.847 9 Si 0.970 3.030 10 H -0.284 1.284 11 H -0.262 1.262 12 H -0.274 1.274 13 C 0.430 3.570 14 O -0.630 6.630 15 C 0.138 3.862 16 H 0.090 0.910 17 O -0.383 6.383 18 C 0.043 3.957 19 C -0.143 4.143 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.118 4.118 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.021 0.979 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.276 0.724 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 5.751 -11.144 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.171 4.171 3 C 0.005 3.995 4 N -0.158 5.158 5 C -0.487 4.487 6 H 0.085 0.915 7 C -0.187 4.187 8 N -0.484 5.484 9 Si 0.793 3.207 10 H -0.209 1.209 11 H -0.186 1.186 12 H -0.199 1.199 13 C 0.219 3.781 14 O -0.517 6.517 15 C 0.077 3.923 16 H 0.107 0.893 17 O -0.302 6.302 18 C -0.033 4.033 19 C -0.200 4.200 20 C -0.120 4.120 21 C -0.129 4.129 22 C -0.146 4.146 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.158 0.842 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.933 5.624 -10.983 15.233 hybrid contribution 0.693 -0.174 1.013 1.240 sum -8.239 5.450 -9.970 14.035 Atomic orbital electron populations 1.21511 0.93848 1.01555 1.01487 1.22028 0.96883 0.96766 1.01435 1.21675 0.78722 0.98143 1.00976 1.43944 1.06629 1.61149 1.04083 1.19482 0.92543 1.53093 0.83610 0.91549 1.25735 0.96795 0.95424 1.00706 1.70203 1.17438 1.32351 1.28390 0.85281 0.78505 0.78926 0.77948 1.20899 1.18628 1.19907 1.20300 0.87806 0.84595 0.85375 1.90453 1.16582 1.57460 1.87254 1.20487 0.93606 0.92248 0.85955 0.89279 1.88015 1.34028 1.79360 1.28796 1.22853 0.95235 0.97521 0.87654 1.21733 0.99840 1.01263 0.97187 1.20120 0.95196 0.94562 1.02123 1.21010 0.98299 0.94653 0.98950 1.21400 0.98565 0.94241 1.00369 1.21561 0.92100 1.01175 0.98356 1.21486 1.00924 0.92412 0.98775 1.21301 0.95012 0.97480 0.99823 0.93049 0.92033 0.92459 0.95982 0.89475 0.90974 0.91358 0.91320 0.92746 0.92100 0.92307 0.92984 0.87932 0.88536 0.84186 0.82600 0.82496 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.91 71.98 0.71 -3.16 16 2 C -0.13 -5.43 5.61 30.59 0.17 -5.25 16 3 C 0.13 5.58 4.28 86.38 0.37 5.95 16 4 N -0.44 -23.56 2.62 -635.54 -1.67 -25.23 16 5 C -0.36 -21.09 9.40 84.04 0.79 -20.30 16 6 H 0.07 4.31 7.36 -2.91 -0.02 4.29 16 7 C 0.02 0.97 4.78 84.93 0.41 1.37 16 8 N -0.85 -41.94 8.38 21.66 0.18 -41.76 16 9 Si 0.97 42.03 29.65 68.60 2.03 44.07 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 C 0.43 23.29 6.74 87.66 0.59 23.88 16 14 O -0.63 -40.10 16.25 14.91 0.24 -39.86 16 15 C 0.14 5.82 1.98 29.10 0.06 5.88 16 16 H 0.09 3.37 5.73 -2.39 -0.01 3.35 16 17 O -0.38 -16.01 9.23 -131.01 -1.21 -17.22 16 18 C 0.04 1.29 6.46 71.98 0.46 1.75 16 19 C -0.14 -3.50 10.28 71.98 0.74 -2.76 16 20 C -0.12 -4.39 4.80 -19.87 -0.10 -4.49 16 21 C -0.11 -4.11 9.29 22.27 0.21 -3.90 16 22 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 23 C -0.11 -2.65 10.05 22.27 0.22 -2.43 16 24 C -0.12 -2.80 10.05 22.27 0.22 -2.57 16 25 C -0.12 -3.48 8.61 22.27 0.19 -3.29 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.02 0.89 7.74 -2.39 -0.02 0.87 16 30 H 0.09 4.22 5.69 -2.39 -0.01 4.20 16 31 H 0.07 3.36 6.28 -2.39 -0.02 3.35 16 32 H 0.07 2.56 3.38 -2.39 -0.01 2.55 16 33 H 0.28 12.62 8.31 -92.71 -0.77 11.85 16 34 H 0.05 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 4.08 7.99 -2.91 -0.02 4.06 16 40 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 41 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.14 3.51 6.53 -2.91 -0.02 3.50 16 Total: -1.00 -73.01 348.00 5.85 -67.16 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.99 Total: 25.60 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.28 Total: -12.75 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -1.49 Total: -67.00 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -0.97 Total: -57.07 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.07 kcal Total: -73.01 5.85 -67.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299214398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.813 kcal (2) G-P(sol) polarization free energy of solvation -73.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds