Wall clock time and date at job start Tue Mar 31 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46782 * 2 1 4 4 N 1.46903 * 109.47093 * 185.38088 * 3 2 1 5 5 C 1.46892 * 110.99893 * 300.35972 * 4 3 2 6 6 C 1.50706 * 109.46971 * 287.97551 * 5 4 3 7 7 O 1.20828 * 119.99831 * 3.24330 * 6 5 4 8 8 O 1.34229 * 119.99809 * 183.24099 * 6 5 4 9 9 C 1.45205 * 116.99649 * 179.97438 * 8 6 5 10 10 C 1.46901 * 110.99641 * 64.31238 * 4 3 2 11 11 C 1.50694 * 109.47853 * 66.04809 * 10 4 3 12 12 C 1.38640 * 119.74995 * 270.30122 * 11 10 4 13 13 C 1.37610 * 120.24843 * 180.30028 * 12 11 10 14 14 C 1.40718 * 119.74588 * 359.41855 * 13 12 11 15 15 C 1.41400 * 120.24441 * 180.30230 * 14 13 12 16 16 H 1.07994 * 120.00133 * 29.25770 * 15 14 13 17 17 C 1.39948 * 119.99481 * 209.25561 * 15 14 13 18 18 N 1.30819 * 120.00452 * 10.12514 * 17 15 14 19 19 Si 1.86804 * 119.99431 * 190.11861 * 17 15 14 20 20 H 1.48497 * 109.46792 * 60.00536 * 19 17 15 21 21 H 1.48501 * 109.46848 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47265 * 300.00058 * 19 17 15 23 23 C 1.40718 * 119.51149 * 0.27611 * 14 13 12 24 24 C 1.37620 * 119.74024 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47147 * 60.00772 * 1 2 3 26 26 H 1.08999 * 109.46668 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47214 * 300.00206 * 1 2 3 28 28 H 1.08993 * 109.47217 * 239.99796 * 2 1 3 29 29 H 1.09001 * 109.46903 * 119.99532 * 2 1 3 30 30 H 1.09000 * 109.47773 * 65.37923 * 3 2 1 31 31 H 1.09000 * 109.46934 * 305.37580 * 3 2 1 32 32 H 1.08996 * 109.47476 * 47.97327 * 5 4 3 33 33 H 1.08997 * 109.47320 * 167.97708 * 5 4 3 34 34 H 1.09008 * 109.46772 * 60.00463 * 9 8 6 35 35 H 1.09000 * 109.46878 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47326 * 300.00200 * 9 8 6 37 37 H 1.09001 * 109.47475 * 306.04237 * 10 4 3 38 38 H 1.09009 * 109.47013 * 186.04865 * 10 4 3 39 39 H 1.07997 * 119.87507 * 359.97438 * 12 11 10 40 40 H 1.08006 * 120.13036 * 179.69492 * 13 12 11 41 41 H 0.97003 * 120.00328 * 180.02562 * 18 17 15 42 42 H 1.07994 * 120.12899 * 180.02562 * 23 14 13 43 43 H 1.08003 * 119.87106 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4447 -0.1299 5 6 4.1313 0.7156 0.9800 6 6 4.0121 1.5264 2.2448 7 8 3.4097 2.5738 2.2365 8 8 4.5751 1.0850 3.3805 9 6 4.4206 1.9178 4.5599 10 6 3.9175 0.8898 -1.4255 11 6 3.4580 1.8026 -2.5330 12 6 2.2093 1.6153 -3.1054 13 6 1.7819 2.4390 -4.1216 14 6 2.6127 3.4820 -4.5710 15 6 2.1815 4.3386 -5.6101 16 1 1.1282 4.5349 -5.7461 17 6 3.1196 4.9319 -6.4624 18 7 4.3692 4.5462 -6.4296 19 14 2.5874 6.2747 -7.6469 20 1 2.0259 7.4163 -6.8810 21 1 3.7605 6.7354 -8.4323 22 1 1.5530 5.7403 -8.5686 23 6 3.8755 3.6667 -3.9783 24 6 4.2848 2.8270 -2.9677 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7575 1.9279 0.9342 31 1 1.6001 1.9834 -0.8379 32 1 3.6305 -0.2431 1.1145 33 1 5.1842 0.5471 0.7544 34 1 3.3606 2.0357 4.7850 35 1 4.9219 1.4468 5.4054 36 1 4.8637 2.8962 4.3743 37 1 3.4711 -0.0957 -1.5582 38 1 5.0038 0.8033 -1.4531 39 1 1.5717 0.8167 -2.7560 40 1 0.8107 2.2882 -4.5695 41 1 5.0196 4.9578 -7.0200 42 1 4.5210 4.4643 -4.3152 43 1 5.2538 2.9666 -2.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342696694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:21 Heat of formation + Delta-G solvation = -65.331972 kcal Electronic energy + Delta-G solvation = -23263.846726 eV Core-core repulsion = 19887.857759 eV Total energy + Delta-G solvation = -3375.988968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48322 -38.55945 -37.00974 -36.09810 -33.68748 -32.76773 -30.67528 -29.30512 -28.78969 -27.09004 -26.70808 -24.61620 -22.93018 -21.59191 -20.94787 -20.32060 -19.30645 -17.53939 -17.26165 -16.67407 -16.45113 -15.44876 -15.31634 -15.22680 -14.47429 -14.25018 -13.84394 -13.53101 -13.44976 -13.28199 -13.09369 -12.49435 -12.21800 -11.95693 -11.90000 -11.76610 -11.68272 -11.45828 -11.35113 -11.21904 -11.04115 -10.94509 -10.83341 -10.52736 -10.44419 -10.24953 -10.11316 -9.56839 -9.30558 -9.16066 -7.97021 -7.39842 -7.20013 -6.66100 -4.33212 2.29934 2.54526 2.84167 3.09089 3.11238 3.12616 3.21899 3.97700 4.28071 4.73193 4.85071 4.98019 5.00617 5.04633 5.06699 5.24631 5.28432 5.38615 5.39947 5.63257 5.67194 5.75024 5.90325 5.96659 5.97733 6.15581 6.22333 6.33478 6.36622 6.38657 6.46908 6.59799 6.98722 7.11976 7.24212 7.31814 7.34313 7.43873 7.66599 7.86425 7.90315 8.10541 8.16414 8.35050 8.69627 8.94713 9.01734 10.27923 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.003491 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.661864 B = 8018.473749 C = 8617.609016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.048 3.952 4 N -0.516 5.516 5 C 0.056 3.944 6 C 0.458 3.542 7 O -0.484 6.484 8 O -0.368 6.368 9 C 0.037 3.963 10 C 0.118 3.882 11 C -0.201 4.201 12 C -0.085 4.085 13 C -0.223 4.223 14 C 0.113 3.887 15 C -0.465 4.465 16 H 0.075 0.925 17 C 0.074 3.926 18 N -0.803 5.803 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.159 4.159 24 C -0.081 4.081 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.279 0.721 42 H 0.118 0.882 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 -8.029 14.414 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.079 4.079 4 N -0.240 5.240 5 C -0.074 4.074 6 C 0.299 3.701 7 O -0.369 6.369 8 O -0.285 6.285 9 C -0.057 4.057 10 C -0.008 4.008 11 C -0.203 4.203 12 C -0.104 4.104 13 C -0.243 4.243 14 C 0.110 3.890 15 C -0.495 4.495 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.429 5.429 19 Si 0.735 3.265 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.178 4.178 24 C -0.100 4.100 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.136 0.864 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.298 -7.149 14.343 16.029 hybrid contribution -0.455 -0.075 -0.470 0.659 sum -0.158 -7.224 13.873 15.642 Atomic orbital electron populations 1.21645 0.95385 1.01181 1.02107 1.22229 0.96981 0.99792 1.01491 1.22400 0.86618 0.94802 1.04130 1.62016 1.08233 1.53140 1.00565 1.21646 1.02974 0.94899 0.87833 1.23872 0.75840 0.85493 0.84906 1.90667 1.38223 1.22975 1.84998 1.86489 1.71548 1.51485 1.19009 1.23195 1.02434 0.95246 0.84801 1.20847 0.99042 0.94874 0.85996 1.18780 0.97022 1.02637 1.01850 1.20358 0.94799 0.98372 0.96887 1.20993 1.01119 0.99300 1.02840 1.17632 0.91398 0.89650 0.90278 1.19548 0.94338 1.24109 1.11521 0.90702 1.25871 0.94482 0.96293 0.97621 1.69780 1.02994 1.36369 1.33797 0.86343 0.78924 0.81236 0.80011 1.18944 1.20407 1.19131 1.21356 0.98681 1.00950 0.96840 1.20515 0.97450 0.95226 0.96822 0.92157 0.93162 0.92991 0.91320 0.92824 0.90502 0.88761 0.90463 0.87123 0.92129 0.88402 0.91936 0.94862 0.91427 0.89716 0.89176 0.91000 0.86370 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 37.16 0.37 -1.34 16 2 C -0.17 -2.12 5.15 -26.73 -0.14 -2.26 16 3 C 0.05 0.76 4.69 -3.82 -0.02 0.74 16 4 N -0.52 -8.28 4.35 -237.52 -1.03 -9.31 16 5 C 0.06 0.70 5.41 -4.98 -0.03 0.68 16 6 C 0.46 6.39 7.76 36.01 0.28 6.67 16 7 O -0.48 -8.35 14.42 -18.75 -0.27 -8.62 16 8 O -0.37 -4.34 10.57 -39.25 -0.41 -4.76 16 9 C 0.04 0.33 10.56 101.05 1.07 1.40 16 10 C 0.12 1.96 4.93 -4.98 -0.02 1.94 16 11 C -0.20 -4.24 4.92 -104.33 -0.51 -4.75 16 12 C -0.09 -1.84 7.85 -39.66 -0.31 -2.15 16 13 C -0.22 -5.42 9.80 -38.87 -0.38 -5.80 16 14 C 0.11 3.02 5.55 -106.82 -0.59 2.43 16 15 C -0.46 -12.48 9.06 -37.74 -0.34 -12.82 16 16 H 0.07 1.93 7.87 -52.49 -0.41 1.52 16 17 C 0.07 1.88 5.26 -17.34 -0.09 1.78 16 18 N -0.80 -21.04 10.84 55.55 0.60 -20.44 16 19 Si 0.91 19.04 29.57 -169.99 -5.03 14.01 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.16 -4.16 8.66 -38.87 -0.34 -4.49 16 24 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.91 5.83 -51.93 -0.30 0.61 16 29 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 30 H 0.08 1.27 6.32 -51.93 -0.33 0.94 16 31 H 0.09 1.72 5.83 -51.93 -0.30 1.42 16 32 H 0.08 0.83 5.85 -51.93 -0.30 0.53 16 33 H 0.11 1.20 7.81 -51.93 -0.41 0.79 16 34 H 0.06 0.54 8.13 -51.92 -0.42 0.12 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.03 0.51 5.99 -51.93 -0.31 0.20 16 38 H 0.07 1.05 7.80 -51.92 -0.41 0.65 16 39 H 0.08 1.61 7.52 -52.49 -0.39 1.22 16 40 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 41 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 42 H 0.12 3.23 6.24 -52.49 -0.33 2.90 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -29.39 346.98 -8.70 -38.09 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.34 Total: 6.07 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -1.44 Total: -20.27 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: -0.43 Total: -29.75 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.69 Total: -13.38 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.39 -8.70 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342696694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.242 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds