Wall clock time and date at job start Tue Mar 31 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46782 * 2 1 4 4 N 1.46903 * 109.47093 * 185.38088 * 3 2 1 5 5 C 1.46892 * 110.99893 * 300.35972 * 4 3 2 6 6 C 1.50706 * 109.46971 * 287.97551 * 5 4 3 7 7 O 1.20828 * 119.99831 * 3.24330 * 6 5 4 8 8 O 1.34229 * 119.99809 * 183.24099 * 6 5 4 9 9 C 1.45205 * 116.99649 * 179.97438 * 8 6 5 10 10 C 1.46901 * 110.99641 * 64.31238 * 4 3 2 11 11 C 1.50694 * 109.47853 * 66.04809 * 10 4 3 12 12 C 1.38640 * 119.74995 * 270.30122 * 11 10 4 13 13 C 1.37610 * 120.24843 * 180.30028 * 12 11 10 14 14 C 1.40718 * 119.74588 * 359.41855 * 13 12 11 15 15 C 1.41400 * 120.24441 * 180.30230 * 14 13 12 16 16 H 1.07994 * 120.00133 * 29.25770 * 15 14 13 17 17 C 1.39948 * 119.99481 * 209.25561 * 15 14 13 18 18 N 1.30819 * 120.00452 * 10.12514 * 17 15 14 19 19 Si 1.86804 * 119.99431 * 190.11861 * 17 15 14 20 20 H 1.48497 * 109.46792 * 60.00536 * 19 17 15 21 21 H 1.48501 * 109.46848 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47265 * 300.00058 * 19 17 15 23 23 C 1.40718 * 119.51149 * 0.27611 * 14 13 12 24 24 C 1.37620 * 119.74024 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47147 * 60.00772 * 1 2 3 26 26 H 1.08999 * 109.46668 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47214 * 300.00206 * 1 2 3 28 28 H 1.08993 * 109.47217 * 239.99796 * 2 1 3 29 29 H 1.09001 * 109.46903 * 119.99532 * 2 1 3 30 30 H 1.09000 * 109.47773 * 65.37923 * 3 2 1 31 31 H 1.09000 * 109.46934 * 305.37580 * 3 2 1 32 32 H 1.08996 * 109.47476 * 47.97327 * 5 4 3 33 33 H 1.08997 * 109.47320 * 167.97708 * 5 4 3 34 34 H 1.09008 * 109.46772 * 60.00463 * 9 8 6 35 35 H 1.09000 * 109.46878 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47326 * 300.00200 * 9 8 6 37 37 H 1.09001 * 109.47475 * 306.04237 * 10 4 3 38 38 H 1.09009 * 109.47013 * 186.04865 * 10 4 3 39 39 H 1.07997 * 119.87507 * 359.97438 * 12 11 10 40 40 H 1.08006 * 120.13036 * 179.69492 * 13 12 11 41 41 H 0.97003 * 120.00328 * 180.02562 * 18 17 15 42 42 H 1.07994 * 120.12899 * 180.02562 * 23 14 13 43 43 H 1.08003 * 119.87106 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5032 1.4447 -0.1299 5 6 4.1313 0.7156 0.9800 6 6 4.0121 1.5264 2.2448 7 8 3.4097 2.5738 2.2365 8 8 4.5751 1.0850 3.3805 9 6 4.4206 1.9178 4.5599 10 6 3.9175 0.8898 -1.4255 11 6 3.4580 1.8026 -2.5330 12 6 2.2093 1.6153 -3.1054 13 6 1.7819 2.4390 -4.1216 14 6 2.6127 3.4820 -4.5710 15 6 2.1815 4.3386 -5.6101 16 1 1.1282 4.5349 -5.7461 17 6 3.1196 4.9319 -6.4624 18 7 4.3692 4.5462 -6.4296 19 14 2.5874 6.2747 -7.6469 20 1 2.0259 7.4163 -6.8810 21 1 3.7605 6.7354 -8.4323 22 1 1.5530 5.7403 -8.5686 23 6 3.8755 3.6667 -3.9783 24 6 4.2848 2.8270 -2.9677 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7575 1.9279 0.9342 31 1 1.6001 1.9834 -0.8379 32 1 3.6305 -0.2431 1.1145 33 1 5.1842 0.5471 0.7544 34 1 3.3606 2.0357 4.7850 35 1 4.9219 1.4468 5.4054 36 1 4.8637 2.8962 4.3743 37 1 3.4711 -0.0957 -1.5582 38 1 5.0038 0.8033 -1.4531 39 1 1.5717 0.8167 -2.7560 40 1 0.8107 2.2882 -4.5695 41 1 5.0196 4.9578 -7.0200 42 1 4.5210 4.4643 -4.3152 43 1 5.2538 2.9666 -2.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342696694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:21 Heat of formation + Delta-G solvation = -81.588794 kcal Electronic energy + Delta-G solvation = -23264.551675 eV Core-core repulsion = 19887.857759 eV Total energy + Delta-G solvation = -3376.693916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.54210 -39.99382 -38.52196 -37.22873 -35.50709 -33.87415 -32.30599 -31.13802 -29.99287 -28.49459 -27.70400 -26.16350 -24.19777 -22.82404 -22.76693 -21.73488 -20.68499 -19.18634 -18.58621 -17.68042 -17.46772 -17.14267 -16.58212 -16.41036 -15.93695 -15.72488 -15.19532 -15.09904 -14.77044 -14.32558 -14.19737 -14.12935 -13.74827 -13.44159 -13.13464 -13.01371 -12.83398 -12.76556 -12.72600 -12.69367 -12.51814 -12.31204 -12.10301 -12.05441 -11.75252 -11.54391 -11.36587 -11.26152 -11.13407 -11.03116 -9.28811 -9.23067 -8.99174 -8.55052 -6.32591 0.96893 1.19771 1.25441 1.37485 1.48710 1.49971 1.74531 2.22618 2.75188 3.19354 3.79546 3.89954 4.00825 4.02700 4.20417 4.31669 4.33114 4.35493 4.36351 4.41318 4.43424 4.59612 4.64148 4.71215 4.72386 4.83643 4.94482 5.02867 5.10735 5.18857 5.20705 5.27201 5.36941 5.42382 5.49148 5.50822 5.76449 5.94537 6.09248 6.15201 6.17020 6.32840 6.44604 6.76255 6.85871 6.99016 7.08589 8.40954 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.003491 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.661864 B = 8018.473749 C = 8617.609016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.157 4.157 3 C 0.054 3.946 4 N -0.539 5.539 5 C 0.057 3.943 6 C 0.460 3.540 7 O -0.526 6.526 8 O -0.364 6.364 9 C 0.030 3.970 10 C 0.124 3.876 11 C -0.186 4.186 12 C -0.080 4.080 13 C -0.239 4.239 14 C 0.078 3.922 15 C -0.506 4.506 16 H 0.071 0.929 17 C 0.031 3.969 18 N -0.836 5.836 19 Si 0.982 3.018 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.185 4.185 24 C -0.090 4.090 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.134 0.866 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.285 0.715 42 H 0.096 0.904 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 -10.063 15.951 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C -0.074 4.074 4 N -0.263 5.263 5 C -0.071 4.071 6 C 0.303 3.697 7 O -0.414 6.414 8 O -0.281 6.281 9 C -0.063 4.063 10 C -0.002 4.002 11 C -0.187 4.187 12 C -0.098 4.098 13 C -0.259 4.259 14 C 0.076 3.924 15 C -0.537 4.537 16 H 0.089 0.911 17 C -0.182 4.182 18 N -0.463 5.463 19 Si 0.803 3.197 20 H -0.188 1.188 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.204 4.204 24 C -0.109 4.109 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.152 0.848 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.596 -9.213 15.908 18.393 hybrid contribution -0.517 0.446 -0.710 0.985 sum 0.078 -8.767 15.198 17.546 Atomic orbital electron populations 1.21647 0.94821 1.02243 1.01599 1.22143 0.97450 0.97574 1.02410 1.22237 0.86696 0.96413 1.02049 1.61763 1.08533 1.54745 1.01256 1.21760 1.04317 0.95064 0.85989 1.24152 0.74892 0.84846 0.85788 1.90665 1.40216 1.24839 1.85696 1.86479 1.70799 1.51653 1.19144 1.23485 1.02904 0.95230 0.84676 1.20776 1.00179 0.94425 0.84794 1.19283 0.95952 1.01574 1.01913 1.20654 0.95336 0.98253 0.95571 1.21210 1.01209 0.99523 1.03923 1.17957 0.92327 0.90928 0.91188 1.19790 0.94610 1.26245 1.13011 0.91103 1.26708 0.94306 0.98140 0.99026 1.69854 1.04002 1.37587 1.34881 0.85255 0.78826 0.77923 0.77668 1.18760 1.19193 1.18422 1.21293 0.98794 1.01775 0.98553 1.20771 0.98547 0.95416 0.96174 0.93468 0.91264 0.92831 0.91211 0.90831 0.91704 0.91946 0.87672 0.84753 0.92269 0.84815 0.92631 0.92517 0.89728 0.86660 0.88840 0.90476 0.88592 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.16 -3.51 5.15 30.60 0.16 -3.35 16 3 C 0.05 1.61 4.69 86.30 0.41 2.01 16 4 N -0.54 -15.96 4.35 -905.37 -3.94 -19.91 16 5 C 0.06 1.24 5.41 85.56 0.46 1.70 16 6 C 0.46 11.82 7.76 71.24 0.55 12.38 16 7 O -0.53 -17.75 14.42 21.96 0.32 -17.44 16 8 O -0.36 -7.61 10.57 -51.41 -0.54 -8.15 16 9 C 0.03 0.48 10.56 113.37 1.20 1.67 16 10 C 0.12 3.73 4.93 85.55 0.42 4.16 16 11 C -0.19 -7.60 4.92 -19.68 -0.10 -7.70 16 12 C -0.08 -3.38 7.85 22.22 0.17 -3.20 16 13 C -0.24 -11.91 9.80 22.73 0.22 -11.69 16 14 C 0.08 4.37 5.55 -21.29 -0.12 4.25 16 15 C -0.51 -28.49 9.06 23.46 0.21 -28.28 16 16 H 0.07 3.86 7.87 -2.91 -0.02 3.83 16 17 C 0.03 1.64 5.26 85.26 0.45 2.09 16 18 N -0.84 -45.53 10.84 21.83 0.24 -45.29 16 19 Si 0.98 40.04 29.57 68.60 2.03 42.06 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 23 C -0.18 -10.08 8.66 22.73 0.20 -9.88 16 24 C -0.09 -4.25 9.67 22.22 0.21 -4.03 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.56 5.83 -2.39 -0.01 1.55 16 29 H 0.07 1.37 6.44 -2.39 -0.02 1.36 16 30 H 0.06 2.10 6.32 -2.39 -0.02 2.08 16 31 H 0.06 2.25 5.83 -2.39 -0.01 2.23 16 32 H 0.11 1.75 5.85 -2.39 -0.01 1.73 16 33 H 0.13 2.32 7.81 -2.39 -0.02 2.30 16 34 H 0.06 0.96 8.13 -2.38 -0.02 0.94 16 35 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 37 H 0.06 1.48 5.99 -2.39 -0.01 1.46 16 38 H 0.08 2.30 7.80 -2.38 -0.02 2.28 16 39 H 0.12 4.14 7.52 -2.91 -0.02 4.11 16 40 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.28 14.11 8.30 -92.71 -0.77 13.34 16 42 H 0.10 5.56 6.24 -2.91 -0.02 5.55 16 43 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -67.18 346.98 4.26 -62.92 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 1.00 Total: 28.03 kcal Atomic # 6 Polarization: -47.39 SS G_CDS: 5.16 Total: -42.23 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -3.71 Total: -65.20 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.23 Total: -25.59 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Total: -67.18 4.26 -62.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342696694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.666 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds