Wall clock time and date at job start Tue Mar 31 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00149 * 2 1 4 4 O 1.20827 * 119.99896 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00505 * 180.02562 * 3 2 1 6 6 N 1.46894 * 109.47652 * 187.26978 * 5 3 2 7 7 C 1.46897 * 111.00307 * 205.37211 * 6 5 3 8 8 C 1.50703 * 109.47376 * 169.99585 * 7 6 5 9 9 C 1.38634 * 119.75186 * 269.73461 * 8 7 6 10 10 C 1.37614 * 120.24929 * 179.72194 * 9 8 7 11 11 C 1.40720 * 119.74197 * 0.56388 * 10 9 8 12 12 C 1.41394 * 120.24287 * 179.68550 * 11 10 9 13 13 H 1.08005 * 119.99975 * 208.46303 * 12 11 10 14 14 C 1.39950 * 120.00194 * 28.45710 * 12 11 10 15 15 N 1.30827 * 119.99567 * 11.26653 * 14 12 11 16 16 Si 1.86802 * 120.00117 * 191.25986 * 14 12 11 17 17 H 1.48502 * 109.46809 * 90.00486 * 16 14 12 18 18 H 1.48502 * 109.47080 * 210.00207 * 16 14 12 19 19 H 1.48494 * 109.47239 * 330.00699 * 16 14 12 20 20 C 1.40713 * 119.51339 * 359.70567 * 11 10 9 21 21 C 1.37619 * 119.74233 * 0.02562 * 20 11 10 22 22 C 1.46899 * 111.00082 * 81.41637 * 6 5 3 23 23 C 1.52998 * 109.47532 * 296.27098 * 22 6 5 24 24 C 1.53000 * 109.47101 * 56.27009 * 22 6 5 25 25 H 1.09001 * 109.47493 * 60.00057 * 1 2 3 26 26 H 1.09004 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47520 * 299.99367 * 1 2 3 28 28 H 1.08999 * 109.47189 * 67.26581 * 5 3 2 29 29 H 1.09004 * 109.46725 * 307.26777 * 5 3 2 30 30 H 1.08996 * 109.47097 * 289.99901 * 7 6 5 31 31 H 1.09000 * 109.46926 * 50.00054 * 7 6 5 32 32 H 1.08000 * 119.87158 * 359.97438 * 9 8 7 33 33 H 1.08003 * 120.13125 * 180.27735 * 10 9 8 34 34 H 0.97006 * 119.99369 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.12864 * 179.97438 * 20 11 10 36 36 H 1.08001 * 119.87019 * 179.97438 * 21 20 11 37 37 H 1.09006 * 109.47203 * 176.26858 * 22 6 5 38 38 H 1.08999 * 109.47071 * 64.89119 * 23 22 6 39 39 H 1.09001 * 109.47643 * 184.88913 * 23 22 6 40 40 H 1.09007 * 109.46988 * 304.89000 * 23 22 6 41 41 H 1.09002 * 109.46946 * 60.00421 * 24 22 6 42 42 H 1.08998 * 109.47456 * 179.97438 * 24 22 6 43 43 H 1.08999 * 109.47268 * 300.00247 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9835 2.6724 0.1748 7 6 5.3169 2.8996 -0.3981 8 6 5.6080 4.3781 -0.4223 9 6 5.2607 5.1295 -1.5343 10 6 5.5166 6.4813 -1.5650 11 6 6.1440 7.0982 -0.4669 12 6 6.4179 8.4851 -0.4899 13 1 7.2528 8.8801 0.0701 14 6 5.6074 9.3462 -1.2384 15 7 4.4769 8.9136 -1.7347 16 14 6.1396 11.1131 -1.5285 17 1 6.9439 11.1895 -2.7745 18 1 4.9386 11.9765 -1.6609 19 1 6.9594 11.5779 -0.3810 20 6 6.4972 6.3245 0.6542 21 6 6.2266 4.9752 0.6652 22 6 3.9462 3.0591 1.5915 23 6 2.5053 2.9909 2.1012 24 6 4.8205 2.1022 2.4045 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 3.9495 0.8975 -0.9486 29 1 3.9620 0.6723 0.8170 30 1 6.0651 2.3919 0.2105 31 1 5.3475 2.5067 -1.4143 32 1 4.7838 4.6529 -2.3780 33 1 5.2411 7.0657 -2.4305 34 1 3.9149 9.5106 -2.2532 35 1 6.9795 6.7876 1.5023 36 1 6.4971 4.3794 1.5244 37 1 4.3225 4.0763 1.7005 38 1 2.1585 1.9580 2.0733 39 1 2.4644 3.3604 3.1258 40 1 1.8662 3.6060 1.4674 41 1 5.8471 2.1508 2.0414 42 1 4.7933 2.3893 3.4556 43 1 4.4443 1.0850 2.2955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342758959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:24 Heat of formation + Delta-G solvation = -53.290223 kcal Electronic energy + Delta-G solvation = -23641.687079 eV Core-core repulsion = 20266.220281 eV Total energy + Delta-G solvation = -3375.466798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54812 -38.61715 -37.08893 -36.02058 -33.70927 -31.91403 -30.58570 -29.27982 -28.59859 -27.18385 -26.84824 -25.31855 -23.24474 -21.46734 -20.89630 -20.05244 -18.93175 -17.47863 -17.24536 -16.95459 -16.42150 -15.52848 -15.27853 -14.89173 -14.32910 -14.00963 -13.85078 -13.54096 -13.22082 -13.05144 -12.92445 -12.49262 -12.45061 -12.13263 -11.89022 -11.80035 -11.54942 -11.41901 -11.32226 -11.12425 -10.98140 -10.74856 -10.63577 -10.50206 -10.36369 -10.24599 -10.03320 -9.56835 -9.30201 -9.15226 -7.96818 -7.39768 -7.20268 -6.65792 -4.32800 2.40968 2.59907 2.84873 3.09666 3.11288 3.13653 3.21669 3.97598 4.26117 4.73048 4.91476 5.03560 5.06031 5.10750 5.16381 5.28392 5.40371 5.44590 5.51042 5.69366 5.74085 5.77214 5.81187 5.99736 6.07521 6.16251 6.24564 6.37209 6.40728 6.46267 6.56171 6.76475 6.99128 7.12613 7.30298 7.32846 7.36931 7.45928 7.66480 7.89124 8.00930 8.10549 8.16807 8.35092 8.69939 8.94791 9.01944 10.27827 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.003669 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.242030 B = 7628.896276 C = 8098.175162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.371 6.371 3 C 0.453 3.547 4 O -0.474 6.474 5 C 0.053 3.947 6 N -0.511 5.511 7 C 0.120 3.880 8 C -0.203 4.203 9 C -0.080 4.080 10 C -0.160 4.160 11 C 0.113 3.887 12 C -0.465 4.465 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.798 5.798 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.223 4.223 21 C -0.087 4.087 22 C 0.073 3.927 23 C -0.139 4.139 24 C -0.189 4.189 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.279 0.721 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 -14.878 3.432 15.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.293 3.707 4 O -0.358 6.358 5 C -0.076 4.076 6 N -0.235 5.235 7 C -0.005 4.005 8 C -0.204 4.204 9 C -0.099 4.099 10 C -0.179 4.179 11 C 0.110 3.890 12 C -0.495 4.495 13 H 0.093 0.907 14 C -0.144 4.144 15 N -0.424 5.424 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.243 4.243 21 C -0.106 4.106 22 C -0.035 4.035 23 C -0.196 4.196 24 C -0.248 4.248 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.305 -14.182 3.037 15.129 hybrid contribution 0.351 0.373 0.330 0.609 sum -3.954 -13.809 3.366 14.753 Atomic orbital electron populations 1.23169 0.76882 1.03120 1.02470 1.86483 1.23026 1.34321 1.85032 1.23818 0.92314 0.81167 0.73372 1.90692 1.66679 1.35817 1.42612 1.21673 0.88142 0.93429 1.04374 1.61936 1.28461 1.16484 1.16636 1.20837 0.86359 0.95434 0.97890 1.18790 1.11096 0.92974 0.97580 1.20510 0.98634 0.94359 0.96374 1.21353 1.04517 0.92647 0.99432 1.17632 0.88798 0.92883 0.89681 1.19587 1.12194 0.91952 1.25738 0.90654 1.25890 0.93835 1.01030 0.93608 1.69812 1.08607 1.37463 1.26539 0.86293 0.78991 0.81580 0.79686 1.19407 1.20351 1.18753 1.20977 1.10909 0.93832 0.98587 1.20351 0.99515 0.94664 0.96022 1.21818 0.95470 1.00769 0.85470 1.22093 0.96573 1.00758 1.00213 1.22513 1.00965 1.00050 1.01277 0.92029 0.88556 0.92160 0.87374 0.90198 0.95010 0.91453 0.89502 0.86378 0.90997 0.89182 0.89787 0.87744 0.94682 0.93388 0.89912 0.92067 0.92023 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.54 10.56 -39.24 -0.41 -4.95 16 3 C 0.45 6.51 5.98 36.00 0.22 6.72 16 4 O -0.47 -8.36 12.83 -18.75 -0.24 -8.60 16 5 C 0.05 0.69 5.32 -4.98 -0.03 0.67 16 6 N -0.51 -8.36 4.08 -229.53 -0.94 -9.30 16 7 C 0.12 2.01 4.93 -4.98 -0.02 1.99 16 8 C -0.20 -4.27 4.92 -104.33 -0.51 -4.79 16 9 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 10 C -0.16 -4.19 8.66 -38.87 -0.34 -4.53 16 11 C 0.11 3.01 5.55 -106.82 -0.59 2.41 16 12 C -0.46 -12.45 9.06 -37.74 -0.34 -12.79 16 13 H 0.08 1.94 7.87 -52.48 -0.41 1.53 16 14 C 0.07 1.87 5.25 -17.34 -0.09 1.78 16 15 N -0.80 -21.16 10.85 55.55 0.60 -20.56 16 16 Si 0.91 19.03 29.57 -169.99 -5.03 14.01 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 20 C -0.22 -5.43 9.80 -38.87 -0.38 -5.81 16 21 C -0.09 -1.87 7.83 -39.66 -0.31 -2.18 16 22 C 0.07 1.16 2.68 -67.71 -0.18 0.97 16 23 C -0.14 -2.17 7.58 37.16 0.28 -1.89 16 24 C -0.19 -2.42 8.58 37.16 0.32 -2.10 16 25 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 28 H 0.11 1.21 7.63 -51.93 -0.40 0.81 16 29 H 0.08 0.90 5.31 -51.93 -0.28 0.62 16 30 H 0.03 0.48 6.23 -51.93 -0.32 0.16 16 31 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.12 3.23 6.22 -52.48 -0.33 2.90 16 34 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 35 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.08 1.59 7.83 -52.49 -0.41 1.18 16 37 H 0.10 1.97 5.62 -51.93 -0.29 1.68 16 38 H 0.03 0.51 5.79 -51.93 -0.30 0.20 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.53 6.64 -51.92 -0.34 1.18 16 41 H 0.06 0.79 6.41 -51.93 -0.33 0.45 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.60 5.94 -51.93 -0.31 0.29 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -29.42 339.92 -8.41 -37.84 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.22 Total: 6.81 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -1.30 Total: -20.37 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: -0.33 Total: -29.85 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.66 Total: -13.55 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.42 -8.41 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342758959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.453 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds