Wall clock time and date at job start Tue Mar 31 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00149 * 2 1 4 4 O 1.20827 * 119.99896 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00505 * 180.02562 * 3 2 1 6 6 N 1.46894 * 109.47652 * 187.26978 * 5 3 2 7 7 C 1.46897 * 111.00307 * 205.37211 * 6 5 3 8 8 C 1.50703 * 109.47376 * 169.99585 * 7 6 5 9 9 C 1.38634 * 119.75186 * 269.73461 * 8 7 6 10 10 C 1.37614 * 120.24929 * 179.72194 * 9 8 7 11 11 C 1.40720 * 119.74197 * 0.56388 * 10 9 8 12 12 C 1.41394 * 120.24287 * 179.68550 * 11 10 9 13 13 H 1.08005 * 119.99975 * 208.46303 * 12 11 10 14 14 C 1.39950 * 120.00194 * 28.45710 * 12 11 10 15 15 N 1.30827 * 119.99567 * 11.26653 * 14 12 11 16 16 Si 1.86802 * 120.00117 * 191.25986 * 14 12 11 17 17 H 1.48502 * 109.46809 * 90.00486 * 16 14 12 18 18 H 1.48502 * 109.47080 * 210.00207 * 16 14 12 19 19 H 1.48494 * 109.47239 * 330.00699 * 16 14 12 20 20 C 1.40713 * 119.51339 * 359.70567 * 11 10 9 21 21 C 1.37619 * 119.74233 * 0.02562 * 20 11 10 22 22 C 1.46899 * 111.00082 * 81.41637 * 6 5 3 23 23 C 1.52998 * 109.47532 * 296.27098 * 22 6 5 24 24 C 1.53000 * 109.47101 * 56.27009 * 22 6 5 25 25 H 1.09001 * 109.47493 * 60.00057 * 1 2 3 26 26 H 1.09004 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47520 * 299.99367 * 1 2 3 28 28 H 1.08999 * 109.47189 * 67.26581 * 5 3 2 29 29 H 1.09004 * 109.46725 * 307.26777 * 5 3 2 30 30 H 1.08996 * 109.47097 * 289.99901 * 7 6 5 31 31 H 1.09000 * 109.46926 * 50.00054 * 7 6 5 32 32 H 1.08000 * 119.87158 * 359.97438 * 9 8 7 33 33 H 1.08003 * 120.13125 * 180.27735 * 10 9 8 34 34 H 0.97006 * 119.99369 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.12864 * 179.97438 * 20 11 10 36 36 H 1.08001 * 119.87019 * 179.97438 * 21 20 11 37 37 H 1.09006 * 109.47203 * 176.26858 * 22 6 5 38 38 H 1.08999 * 109.47071 * 64.89119 * 23 22 6 39 39 H 1.09001 * 109.47643 * 184.88913 * 23 22 6 40 40 H 1.09007 * 109.46988 * 304.89000 * 23 22 6 41 41 H 1.09002 * 109.46946 * 60.00421 * 24 22 6 42 42 H 1.08998 * 109.47456 * 179.97438 * 24 22 6 43 43 H 1.08999 * 109.47268 * 300.00247 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9835 2.6724 0.1748 7 6 5.3169 2.8996 -0.3981 8 6 5.6080 4.3781 -0.4223 9 6 5.2607 5.1295 -1.5343 10 6 5.5166 6.4813 -1.5650 11 6 6.1440 7.0982 -0.4669 12 6 6.4179 8.4851 -0.4899 13 1 7.2528 8.8801 0.0701 14 6 5.6074 9.3462 -1.2384 15 7 4.4769 8.9136 -1.7347 16 14 6.1396 11.1131 -1.5285 17 1 6.9439 11.1895 -2.7745 18 1 4.9386 11.9765 -1.6609 19 1 6.9594 11.5779 -0.3810 20 6 6.4972 6.3245 0.6542 21 6 6.2266 4.9752 0.6652 22 6 3.9462 3.0591 1.5915 23 6 2.5053 2.9909 2.1012 24 6 4.8205 2.1022 2.4045 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 3.9495 0.8975 -0.9486 29 1 3.9620 0.6723 0.8170 30 1 6.0651 2.3919 0.2105 31 1 5.3475 2.5067 -1.4143 32 1 4.7838 4.6529 -2.3780 33 1 5.2411 7.0657 -2.4305 34 1 3.9149 9.5106 -2.2532 35 1 6.9795 6.7876 1.5023 36 1 6.4971 4.3794 1.5244 37 1 4.3225 4.0763 1.7005 38 1 2.1585 1.9580 2.0733 39 1 2.4644 3.3604 3.1258 40 1 1.8662 3.6060 1.4674 41 1 5.8471 2.1508 2.0414 42 1 4.7933 2.3893 3.4556 43 1 4.4443 1.0850 2.2955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342758959.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:24 Heat of formation + Delta-G solvation = -69.818121 kcal Electronic energy + Delta-G solvation = -23642.403783 eV Core-core repulsion = 20266.220281 eV Total energy + Delta-G solvation = -3376.183502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64796 -40.01557 -38.65344 -37.17105 -35.54920 -33.25993 -32.08802 -31.14258 -29.90210 -28.33300 -28.00907 -26.74678 -24.78833 -22.88874 -22.52292 -21.66700 -20.18719 -19.17357 -18.54884 -18.05803 -17.46474 -17.13834 -16.60076 -16.13326 -15.89256 -15.65934 -15.20706 -15.01942 -14.40922 -14.26925 -14.17522 -14.07391 -13.71984 -13.55101 -13.37546 -13.07296 -12.95860 -12.83188 -12.73105 -12.53760 -12.39087 -12.21788 -12.08379 -11.92845 -11.69044 -11.53802 -11.38923 -11.18033 -11.15172 -11.02282 -9.28941 -9.23635 -8.99333 -8.55413 -6.32717 0.96466 1.19444 1.33405 1.37248 1.48553 1.51104 1.77914 2.22159 2.73989 3.17147 3.79592 3.88220 4.04904 4.10006 4.22798 4.28983 4.33945 4.35894 4.37090 4.44013 4.50731 4.60990 4.67475 4.69684 4.73911 4.77851 4.85063 4.94969 5.10135 5.17821 5.19757 5.28974 5.37189 5.46435 5.50786 5.57815 5.76214 5.96107 6.13295 6.16638 6.20283 6.34056 6.44337 6.76360 6.95700 6.98796 7.08752 8.40253 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024190 B = 0.003669 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.242030 B = 7628.896276 C = 8098.175162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.454 3.546 4 O -0.516 6.516 5 C 0.054 3.946 6 N -0.537 5.537 7 C 0.125 3.875 8 C -0.186 4.186 9 C -0.090 4.090 10 C -0.186 4.186 11 C 0.078 3.922 12 C -0.504 4.504 13 H 0.073 0.927 14 C 0.029 3.971 15 N -0.837 5.837 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.258 1.258 20 C -0.239 4.239 21 C -0.081 4.081 22 C 0.072 3.928 23 C -0.130 4.130 24 C -0.181 4.181 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.284 0.716 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 -17.525 4.277 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.284 6.284 3 C 0.296 3.704 4 O -0.403 6.403 5 C -0.074 4.074 6 N -0.262 5.262 7 C 0.000 4.000 8 C -0.187 4.187 9 C -0.109 4.109 10 C -0.205 4.205 11 C 0.076 3.924 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.183 4.183 15 N -0.464 5.464 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.182 1.182 20 C -0.258 4.258 21 C -0.099 4.099 22 C -0.036 4.036 23 C -0.187 4.187 24 C -0.239 4.239 25 H 0.073 0.927 26 H 0.151 0.849 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.830 -16.871 3.890 17.732 hybrid contribution 0.107 0.960 0.111 0.972 sum -3.723 -15.911 4.001 16.824 Atomic orbital electron populations 1.23447 0.75372 1.05381 1.02019 1.86474 1.24474 1.33018 1.84406 1.24143 0.92930 0.81089 0.72188 1.90705 1.67654 1.37237 1.44712 1.21795 0.87273 0.91643 1.06721 1.61668 1.28152 1.19280 1.17060 1.20785 0.87513 0.92053 0.99668 1.19292 1.08025 0.95578 0.95842 1.20754 0.98653 0.93613 0.97887 1.21288 1.06271 0.93901 0.99066 1.17959 0.90112 0.93613 0.90757 1.19831 1.13136 0.92777 1.27675 0.90894 1.26757 0.93396 1.05403 0.92788 1.69899 1.09728 1.39201 1.27559 0.85178 0.78720 0.75896 0.79708 1.18642 1.19518 1.18208 1.21203 1.11240 0.95230 0.98158 1.20667 0.98307 0.93826 0.97132 1.21727 0.95860 0.99905 0.86116 1.21965 0.96034 1.00737 0.99980 1.22416 1.00293 1.00086 1.01109 0.92687 0.84920 0.92522 0.84985 0.87422 0.92290 0.89854 0.88313 0.88674 0.90578 0.88741 0.86452 0.91227 0.93525 0.92306 0.93495 0.91649 0.91143 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -7.95 10.56 -51.35 -0.54 -8.50 16 3 C 0.45 12.05 5.98 71.23 0.43 12.48 16 4 O -0.52 -17.92 12.83 21.96 0.28 -17.64 16 5 C 0.05 1.21 5.32 85.56 0.46 1.67 16 6 N -0.54 -16.21 4.08 -880.09 -3.59 -19.80 16 7 C 0.13 3.78 4.93 85.56 0.42 4.20 16 8 C -0.19 -7.61 4.92 -19.67 -0.10 -7.71 16 9 C -0.09 -4.28 9.67 22.22 0.21 -4.07 16 10 C -0.19 -10.19 8.66 22.73 0.20 -9.99 16 11 C 0.08 4.34 5.55 -21.29 -0.12 4.22 16 12 C -0.50 -28.30 9.06 23.46 0.21 -28.09 16 13 H 0.07 3.94 7.87 -2.91 -0.02 3.92 16 14 C 0.03 1.56 5.25 85.26 0.45 2.01 16 15 N -0.84 -46.53 10.85 21.83 0.24 -46.30 16 16 Si 0.98 40.18 29.57 68.60 2.03 42.21 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 20 C -0.24 -11.83 9.80 22.73 0.22 -11.61 16 21 C -0.08 -3.40 7.83 22.22 0.17 -3.23 16 22 C 0.07 2.13 2.68 44.91 0.12 2.26 16 23 C -0.13 -3.90 7.58 71.98 0.55 -3.36 16 24 C -0.18 -3.86 8.58 71.98 0.62 -3.24 16 25 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 26 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 28 H 0.13 2.36 7.63 -2.39 -0.02 2.34 16 29 H 0.11 1.86 5.31 -2.39 -0.01 1.85 16 30 H 0.06 1.50 6.23 -2.39 -0.01 1.48 16 31 H 0.08 2.28 7.73 -2.39 -0.02 2.26 16 32 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.10 5.56 6.22 -2.91 -0.02 5.54 16 34 H 0.28 14.40 8.30 -92.70 -0.77 13.63 16 35 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.12 4.12 7.83 -2.91 -0.02 4.10 16 37 H 0.07 2.55 5.62 -2.38 -0.01 2.53 16 38 H 0.05 1.26 5.79 -2.39 -0.01 1.25 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.75 6.64 -2.38 -0.02 1.74 16 41 H 0.06 1.36 6.41 -2.39 -0.02 1.34 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.28 5.94 -2.39 -0.01 1.27 16 Total: -1.00 -68.05 339.92 4.46 -63.59 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 1.01 Total: 29.16 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 5.04 Total: -42.73 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -3.35 Total: -66.09 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.26 Total: -26.14 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -68.05 4.46 -63.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342758959.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.226 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds