Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47779 * 2 1 4 4 H 1.08997 * 109.46591 * 54.99947 * 3 2 1 5 5 O 1.42898 * 109.46894 * 295.00546 * 3 2 1 6 6 C 1.52996 * 109.47338 * 174.99965 * 3 2 1 7 7 N 1.46495 * 109.47168 * 185.00006 * 6 3 2 8 8 C 1.34779 * 120.00324 * 180.02562 * 7 6 3 9 9 O 1.21278 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47044 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47493 * 305.98058 * 11 10 8 13 13 C 1.50699 * 109.46802 * 65.98063 * 11 10 8 14 14 H 1.07996 * 120.00319 * 26.91275 * 13 11 10 15 15 C 1.37882 * 120.00193 * 206.90875 * 13 11 10 16 16 N 1.31519 * 119.99874 * 353.28371 * 15 13 11 17 17 Si 1.86801 * 120.00294 * 173.55447 * 15 13 11 18 18 H 1.48497 * 109.47144 * 269.72519 * 17 15 13 19 19 H 1.48498 * 109.46829 * 29.72826 * 17 15 13 20 20 H 1.48507 * 109.46835 * 149.72714 * 17 15 13 21 21 C 1.50699 * 109.47289 * 185.97873 * 11 10 8 22 22 C 1.38237 * 119.99863 * 294.44402 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78435 * 22 21 11 24 24 C 1.38229 * 120.00057 * 0.44553 * 23 22 21 25 25 C 1.38236 * 119.99936 * 359.80698 * 24 23 22 26 26 C 1.38230 * 120.00146 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47291 * 59.99318 * 1 2 3 28 28 H 1.08993 * 109.47875 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46844 * 299.99819 * 1 2 3 30 30 H 1.09006 * 109.46844 * 240.00181 * 2 1 3 31 31 H 1.09000 * 109.47291 * 120.00682 * 2 1 3 32 32 H 0.96703 * 114.00274 * 299.99317 * 5 3 2 33 33 H 1.09006 * 109.46938 * 65.00477 * 6 3 2 34 34 H 1.08995 * 109.47200 * 305.00430 * 6 3 2 35 35 H 0.97006 * 119.99754 * 0.02562 * 7 6 3 36 36 H 1.09006 * 109.46831 * 60.00366 * 10 8 7 37 37 H 1.08995 * 109.47505 * 300.00197 * 10 8 7 38 38 H 0.97005 * 119.99795 * 354.69035 * 16 15 13 39 39 H 1.07999 * 119.99895 * 359.97438 * 22 21 11 40 40 H 1.08004 * 120.00271 * 180.27444 * 23 22 21 41 41 H 1.08007 * 120.00590 * 179.83396 * 24 23 22 42 42 H 1.08003 * 120.00202 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.00248 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 8 1.6620 2.0813 -1.2210 6 6 3.5649 1.4441 0.1257 7 7 4.0434 2.8235 0.2458 8 6 5.3626 3.0709 0.3684 9 8 6.1536 2.1516 0.3789 10 6 5.8549 4.4899 0.4914 11 6 7.3797 4.4916 0.6172 12 1 7.6772 3.8413 1.4398 13 6 7.9901 3.9897 -0.6660 14 1 7.4586 4.1067 -1.5988 15 6 9.2273 3.3813 -0.6491 16 7 9.9327 3.3561 0.4606 17 14 9.9049 2.5992 -2.2043 18 1 9.4877 1.1753 -2.2646 19 1 9.3780 3.3201 -3.3909 20 1 11.3877 2.6806 -2.1938 21 6 7.8599 5.8944 0.8869 22 6 7.7006 6.8761 -0.0732 23 6 8.1371 8.1638 0.1760 24 6 8.7412 8.4677 1.3816 25 6 8.9052 7.4848 2.3396 26 6 8.4647 6.1981 2.0923 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0142 1.6542 -2.0139 33 1 4.0030 0.9834 -0.7597 34 1 3.8571 0.8798 1.0112 35 1 3.4108 3.5588 0.2370 36 1 5.4171 4.9509 1.3768 37 1 5.5625 5.0540 -0.3942 38 1 9.6186 3.8313 1.2458 39 1 7.2324 6.6376 -1.0167 40 1 8.0087 8.9319 -0.5724 41 1 9.0847 9.4732 1.5753 42 1 9.3769 7.7223 3.2818 43 1 8.5932 5.4301 2.8406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344377791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -86.566312 kcal Electronic energy + Delta-G solvation = -23082.864958 eV Core-core repulsion = 19705.955201 eV Total energy + Delta-G solvation = -3376.909758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.34902 -38.48683 -37.76258 -34.41588 -33.72240 -32.98522 -31.32101 -30.10231 -29.41578 -28.06145 -25.11224 -23.52306 -22.59899 -21.71380 -21.64425 -20.18286 -19.40311 -17.10493 -16.67677 -16.30406 -16.25904 -15.76092 -15.16248 -14.80554 -14.32449 -14.22468 -14.02679 -13.67069 -13.60155 -13.01195 -12.90463 -12.55946 -12.37850 -12.29024 -12.28467 -11.96826 -11.81443 -11.43252 -11.24870 -11.00626 -10.88113 -10.69725 -10.42041 -10.23108 -10.09133 -10.04104 -9.67992 -9.02570 -8.64215 -8.57210 -8.26165 -8.12920 -7.62641 -6.21054 -3.89719 2.20059 2.25615 3.47251 3.51671 3.56133 3.59274 3.69453 4.23320 4.53405 4.61796 4.68919 4.73845 4.79339 5.17303 5.23430 5.43122 5.47266 5.60502 5.61178 5.64623 5.66279 5.69487 5.77248 5.89535 5.97865 6.01009 6.03482 6.11417 6.18603 6.32996 6.43676 6.70295 6.80149 6.86994 6.94127 7.22090 7.23985 7.39272 7.43423 7.74406 7.86913 8.05623 8.24857 8.53709 8.98067 9.03605 9.79107 11.18502 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.004218 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.276052 B = 6637.367448 C = 7868.380212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.096 3.904 4 H 0.103 0.897 5 O -0.559 6.559 6 C 0.090 3.910 7 N -0.745 5.745 8 C 0.512 3.488 9 O -0.502 6.502 10 C -0.116 4.116 11 C 0.072 3.928 12 H 0.049 0.951 13 C -0.566 4.566 14 H 0.045 0.955 15 C 0.031 3.969 16 N -0.908 5.908 17 Si 1.064 2.936 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.287 1.287 21 C -0.033 4.033 22 C -0.106 4.106 23 C -0.130 4.130 24 C -0.152 4.152 25 C -0.125 4.125 26 C -0.130 4.130 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.377 0.623 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.396 0.604 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.271 0.729 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 0.442 0.470 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.037 3.963 4 H 0.120 0.880 5 O -0.365 6.365 6 C -0.035 4.035 7 N -0.401 5.401 8 C 0.299 3.701 9 O -0.373 6.373 10 C -0.156 4.156 11 C 0.053 3.947 12 H 0.067 0.933 13 C -0.604 4.604 14 H 0.063 0.937 15 C -0.174 4.174 16 N -0.543 5.543 17 Si 0.893 3.107 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.033 4.033 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.905 -0.743 0.294 13.928 hybrid contribution -1.147 0.815 0.178 1.418 sum -15.052 0.072 0.473 15.059 Atomic orbital electron populations 1.21690 0.94943 1.01469 1.02378 1.22166 0.97141 0.96698 1.03276 1.22212 0.92672 0.93384 0.88058 0.87959 1.86558 1.76795 1.57448 1.15677 1.21920 0.93669 0.85329 1.02550 1.46077 1.08256 1.07602 1.78116 1.20885 0.80893 0.92602 0.75751 1.90746 1.54020 1.46220 1.46347 1.21653 1.00144 0.92319 1.01498 1.17867 0.88449 0.88548 0.99818 0.93283 1.21561 1.05246 1.41564 0.92004 0.93655 1.25577 0.93943 0.95248 1.02630 1.70700 1.40092 1.40898 1.02603 0.83635 0.75899 0.76479 0.74676 1.21528 1.21710 1.21346 1.20852 0.94188 0.96956 0.91334 1.20932 1.00432 0.92130 0.98963 1.21017 1.00212 0.96729 0.96861 1.20825 1.02764 0.98510 0.94958 1.20963 1.00781 0.93763 0.98791 1.21075 1.00474 0.95814 0.97496 0.92050 0.92807 0.92764 0.91279 0.90721 0.77580 0.91655 0.91261 0.77015 0.91679 0.90231 0.91753 0.86668 0.87437 0.87580 0.87454 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.73 16 2 C -0.15 -1.23 5.61 -26.73 -0.15 -1.38 16 3 C 0.10 0.92 3.00 -26.73 -0.08 0.83 16 4 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 5 O -0.56 -5.61 12.82 -35.23 -0.45 -6.06 16 6 C 0.09 1.16 5.31 -4.05 -0.02 1.14 16 7 N -0.74 -11.14 5.50 -60.30 -0.33 -11.47 16 8 C 0.51 10.31 7.58 -10.99 -0.08 10.22 16 9 O -0.50 -12.64 15.02 5.56 0.08 -12.56 16 10 C -0.12 -2.28 4.95 -27.89 -0.14 -2.42 16 11 C 0.07 1.75 1.23 -92.93 -0.11 1.64 16 12 H 0.05 1.34 6.59 -51.93 -0.34 1.00 16 13 C -0.57 -15.55 6.35 -34.44 -0.22 -15.76 16 14 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 15 C 0.03 0.91 5.45 -17.82 -0.10 0.82 16 16 N -0.91 -27.94 13.56 55.43 0.75 -27.19 16 17 Si 1.06 26.51 29.91 -169.99 -5.08 21.42 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C -0.03 -0.73 4.53 -104.62 -0.47 -1.20 16 22 C -0.11 -2.20 8.90 -39.58 -0.35 -2.56 16 23 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 24 C -0.15 -2.67 10.05 -39.59 -0.40 -3.07 16 25 C -0.12 -2.31 10.05 -39.59 -0.40 -2.71 16 26 C -0.13 -2.75 9.18 -39.59 -0.36 -3.11 16 27 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.38 2.87 9.05 45.56 0.41 3.28 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 4.97 8.47 -40.82 -0.35 4.62 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.47 7.97 -51.93 -0.41 1.06 16 38 H 0.27 8.22 6.24 -40.82 -0.25 7.96 16 39 H 0.12 2.33 7.85 -52.49 -0.41 1.92 16 40 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 41 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 42 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.11 2.29 7.95 -52.48 -0.42 1.87 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -34.19 359.24 -8.58 -42.76 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.04 Total: 8.75 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.92 Total: -21.06 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.42 Total: -38.66 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.37 Total: -18.62 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.08 Total: 21.42 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.19 -8.58 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344377791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.802 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds