Wall clock time and date at job start Tue Mar 31 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47779 * 2 1 4 4 H 1.08997 * 109.46591 * 54.99947 * 3 2 1 5 5 O 1.42898 * 109.46894 * 295.00546 * 3 2 1 6 6 C 1.52996 * 109.47338 * 174.99965 * 3 2 1 7 7 N 1.46495 * 109.47168 * 185.00006 * 6 3 2 8 8 C 1.34779 * 120.00324 * 180.02562 * 7 6 3 9 9 O 1.21278 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00201 * 179.97438 * 8 7 6 11 11 C 1.52996 * 109.47044 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47493 * 305.98058 * 11 10 8 13 13 C 1.50699 * 109.46802 * 65.98063 * 11 10 8 14 14 H 1.07996 * 120.00319 * 26.91275 * 13 11 10 15 15 C 1.37882 * 120.00193 * 206.90875 * 13 11 10 16 16 N 1.31519 * 119.99874 * 353.28371 * 15 13 11 17 17 Si 1.86801 * 120.00294 * 173.55447 * 15 13 11 18 18 H 1.48497 * 109.47144 * 269.72519 * 17 15 13 19 19 H 1.48498 * 109.46829 * 29.72826 * 17 15 13 20 20 H 1.48507 * 109.46835 * 149.72714 * 17 15 13 21 21 C 1.50699 * 109.47289 * 185.97873 * 11 10 8 22 22 C 1.38237 * 119.99863 * 294.44402 * 21 11 10 23 23 C 1.38237 * 119.99818 * 179.78435 * 22 21 11 24 24 C 1.38229 * 120.00057 * 0.44553 * 23 22 21 25 25 C 1.38236 * 119.99936 * 359.80698 * 24 23 22 26 26 C 1.38230 * 120.00146 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47291 * 59.99318 * 1 2 3 28 28 H 1.08993 * 109.47875 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46844 * 299.99819 * 1 2 3 30 30 H 1.09006 * 109.46844 * 240.00181 * 2 1 3 31 31 H 1.09000 * 109.47291 * 120.00682 * 2 1 3 32 32 H 0.96703 * 114.00274 * 299.99317 * 5 3 2 33 33 H 1.09006 * 109.46938 * 65.00477 * 6 3 2 34 34 H 1.08995 * 109.47200 * 305.00430 * 6 3 2 35 35 H 0.97006 * 119.99754 * 0.02562 * 7 6 3 36 36 H 1.09006 * 109.46831 * 60.00366 * 10 8 7 37 37 H 1.08995 * 109.47505 * 300.00197 * 10 8 7 38 38 H 0.97005 * 119.99795 * 354.69035 * 16 15 13 39 39 H 1.07999 * 119.99895 * 359.97438 * 22 21 11 40 40 H 1.08004 * 120.00271 * 180.27444 * 23 22 21 41 41 H 1.08007 * 120.00590 * 179.83396 * 24 23 22 42 42 H 1.08003 * 120.00202 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.00248 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 8 1.6620 2.0813 -1.2210 6 6 3.5649 1.4441 0.1257 7 7 4.0434 2.8235 0.2458 8 6 5.3626 3.0709 0.3684 9 8 6.1536 2.1516 0.3789 10 6 5.8549 4.4899 0.4914 11 6 7.3797 4.4916 0.6172 12 1 7.6772 3.8413 1.4398 13 6 7.9901 3.9897 -0.6660 14 1 7.4586 4.1067 -1.5988 15 6 9.2273 3.3813 -0.6491 16 7 9.9327 3.3561 0.4606 17 14 9.9049 2.5992 -2.2043 18 1 9.4877 1.1753 -2.2646 19 1 9.3780 3.3201 -3.3909 20 1 11.3877 2.6806 -2.1938 21 6 7.8599 5.8944 0.8869 22 6 7.7006 6.8761 -0.0732 23 6 8.1371 8.1638 0.1760 24 6 8.7412 8.4677 1.3816 25 6 8.9052 7.4848 2.3396 26 6 8.4647 6.1981 2.0923 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.0142 1.6542 -2.0139 33 1 4.0030 0.9834 -0.7597 34 1 3.8571 0.8798 1.0112 35 1 3.4108 3.5588 0.2370 36 1 5.4171 4.9509 1.3768 37 1 5.5625 5.0540 -0.3942 38 1 9.6186 3.8313 1.2458 39 1 7.2324 6.6376 -1.0167 40 1 8.0087 8.9319 -0.5724 41 1 9.0847 9.4732 1.5753 42 1 9.3769 7.7223 3.2818 43 1 8.5932 5.4301 2.8406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344377791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:07 Heat of formation + Delta-G solvation = -110.538283 kcal Electronic energy + Delta-G solvation = -23083.904461 eV Core-core repulsion = 19705.955201 eV Total energy + Delta-G solvation = -3377.949260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85924 -39.91399 -38.86187 -36.17324 -35.15806 -33.72700 -33.27100 -31.61611 -30.83028 -29.27070 -26.91436 -24.98381 -23.92834 -23.18136 -22.53624 -21.74902 -21.00614 -18.88160 -18.10050 -17.61368 -17.24061 -17.10708 -16.58910 -16.09689 -15.74836 -15.66551 -15.58949 -15.23379 -14.74851 -14.49024 -14.34371 -14.05743 -13.93508 -13.49997 -13.43922 -13.16471 -13.00049 -12.88151 -12.66562 -12.60900 -12.06236 -11.95653 -11.86054 -11.77995 -11.72480 -11.51981 -11.10420 -10.73249 -10.56940 -10.35994 -10.00206 -9.64806 -9.27657 -8.45075 -6.11846 0.67188 0.73148 1.47614 1.57768 1.72086 1.87202 2.30536 2.61686 3.10262 3.35646 3.45323 3.66776 3.94437 4.05968 4.12975 4.13818 4.28005 4.29527 4.34810 4.43639 4.48134 4.56731 4.61969 4.69416 4.82352 4.83985 4.86471 4.90253 5.09644 5.11206 5.22862 5.26811 5.40106 5.40464 5.42478 5.56483 5.74086 5.81601 5.94443 6.23585 6.30609 6.40108 6.68182 6.76016 6.78228 7.50327 7.63506 8.95264 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.004218 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.276052 B = 6637.367448 C = 7868.380212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.111 0.889 5 O -0.568 6.568 6 C 0.087 3.913 7 N -0.722 5.722 8 C 0.510 3.490 9 O -0.563 6.563 10 C -0.111 4.111 11 C 0.074 3.926 12 H 0.004 0.996 13 C -0.556 4.556 14 H 0.038 0.962 15 C -0.025 4.025 16 N -0.945 5.945 17 Si 1.100 2.900 18 H -0.289 1.289 19 H -0.267 1.267 20 H -0.287 1.287 21 C -0.056 4.056 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.153 4.153 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.387 0.613 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.412 0.588 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.261 0.739 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.072 2.509 -0.260 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.190 4.190 3 C 0.052 3.948 4 H 0.128 0.872 5 O -0.375 6.375 6 C -0.037 4.037 7 N -0.377 5.377 8 C 0.297 3.703 9 O -0.440 6.440 10 C -0.151 4.151 11 C 0.055 3.945 12 H 0.022 0.978 13 C -0.594 4.594 14 H 0.057 0.943 15 C -0.224 4.224 16 N -0.583 5.583 17 Si 0.925 3.075 18 H -0.216 1.216 19 H -0.192 1.192 20 H -0.213 1.213 21 C -0.057 4.057 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.162 4.162 25 C -0.143 4.143 26 C -0.172 4.172 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.236 0.764 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.556 1.355 -0.454 15.621 hybrid contribution -0.763 0.252 0.452 0.922 sum -16.318 1.608 -0.002 16.397 Atomic orbital electron populations 1.21665 0.94129 1.02084 1.02301 1.22142 0.97699 0.95453 1.03689 1.22106 0.89745 0.94666 0.88321 0.87171 1.86538 1.76765 1.57964 1.16214 1.22112 0.96203 0.83667 1.01708 1.45844 1.06770 1.09314 1.75774 1.20991 0.82075 0.92088 0.75116 1.90726 1.55956 1.47682 1.49608 1.21561 0.97431 0.92737 1.03387 1.17691 0.91122 0.89104 0.96607 0.97788 1.21809 1.04435 1.40209 0.92947 0.94325 1.26749 0.95101 0.96231 1.04295 1.70787 1.41170 1.43127 1.03199 0.83172 0.75503 0.75979 0.72891 1.21616 1.19179 1.21261 1.20629 0.95939 0.96281 0.92852 1.21012 1.01478 0.93139 0.98465 1.21411 0.98672 0.96228 0.97942 1.21315 1.00941 0.99994 0.93921 1.21305 0.99917 0.92662 1.00403 1.21134 1.01622 0.97126 0.97269 0.92410 0.91897 0.92532 0.90877 0.90438 0.76363 0.92770 0.92013 0.75163 0.89043 0.88670 0.92886 0.86881 0.83928 0.83495 0.84645 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.81 71.98 0.71 -1.14 16 2 C -0.15 -2.17 5.61 30.59 0.17 -2.00 16 3 C 0.11 1.94 3.00 30.59 0.09 2.03 16 4 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 5 O -0.57 -10.29 12.82 -148.98 -1.91 -12.20 16 6 C 0.09 2.22 5.31 86.38 0.46 2.68 16 7 N -0.72 -21.22 5.50 -463.08 -2.55 -23.76 16 8 C 0.51 20.94 7.58 87.66 0.66 21.60 16 9 O -0.56 -29.69 15.02 -3.02 -0.05 -29.74 16 10 C -0.11 -4.42 4.95 29.85 0.15 -4.27 16 11 C 0.07 3.72 1.23 -12.29 -0.02 3.70 16 12 H 0.00 0.23 6.59 -2.39 -0.02 0.21 16 13 C -0.56 -31.45 6.35 25.60 0.16 -31.29 16 14 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 15 C -0.03 -1.53 5.45 84.66 0.46 -1.07 16 16 N -0.94 -60.84 13.56 21.45 0.29 -60.55 16 17 Si 1.10 54.54 29.91 68.60 2.05 56.59 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 21 C -0.06 -2.56 4.53 -19.87 -0.09 -2.65 16 22 C -0.12 -4.95 8.90 22.27 0.20 -4.75 16 23 C -0.12 -4.13 10.05 22.27 0.22 -3.91 16 24 C -0.14 -4.49 10.05 22.27 0.22 -4.27 16 25 C -0.12 -4.38 10.05 22.27 0.22 -4.15 16 26 C -0.15 -6.57 9.18 22.27 0.20 -6.36 16 27 H 0.06 0.79 7.82 -2.39 -0.02 0.77 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.39 5.24 9.05 -74.06 -0.67 4.57 16 33 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 35 H 0.41 9.63 8.47 -92.70 -0.79 8.84 16 36 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 37 H 0.10 3.46 7.97 -2.39 -0.02 3.44 16 38 H 0.26 16.79 6.24 -92.70 -0.58 16.21 16 39 H 0.11 4.49 7.85 -2.91 -0.02 4.46 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 41 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 42 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 43 H 0.10 4.24 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -77.83 359.24 1.41 -76.42 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.26 Total: 29.09 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.83 Total: -35.85 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.26 Total: -84.31 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -1.96 Total: -41.94 kcal Atomic # 14 Polarization: 54.54 SS G_CDS: 2.05 Total: 56.59 kcal Total: -77.83 1.41 -76.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344377791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.116 kcal (2) G-P(sol) polarization free energy of solvation -77.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds