Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 H 1.08997 * 109.47634 * 305.00304 * 3 2 1 5 5 O 1.42901 * 109.47066 * 65.00203 * 3 2 1 6 6 C 1.53005 * 109.47130 * 185.00138 * 3 2 1 7 7 N 1.46498 * 109.46873 * 180.02562 * 6 3 2 8 8 C 1.34783 * 119.99693 * 179.72285 * 7 6 3 9 9 O 1.21275 * 119.99703 * 0.27529 * 8 7 6 10 10 C 1.50698 * 119.99877 * 180.27361 * 8 7 6 11 11 C 1.53000 * 109.47271 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47300 * 305.01005 * 11 10 8 13 13 C 1.50705 * 109.46529 * 64.99855 * 11 10 8 14 14 H 1.07999 * 120.00167 * 29.59136 * 13 11 10 15 15 C 1.37875 * 119.99931 * 209.58166 * 13 11 10 16 16 N 1.31507 * 120.00096 * 4.94748 * 15 13 11 17 17 Si 1.86802 * 119.99924 * 184.94725 * 15 13 11 18 18 H 1.48493 * 109.47242 * 60.00202 * 17 15 13 19 19 H 1.48507 * 109.46873 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47127 * 299.99930 * 17 15 13 21 21 C 1.50698 * 109.47375 * 185.00021 * 11 10 8 22 22 C 1.38232 * 120.00009 * 296.77218 * 21 11 10 23 23 C 1.38232 * 120.00004 * 179.78929 * 22 21 11 24 24 C 1.38238 * 120.00094 * 0.44012 * 23 22 21 25 25 C 1.38242 * 119.99616 * 359.81327 * 24 23 22 26 26 C 1.38232 * 119.99763 * 117.04760 * 21 11 10 27 27 H 1.09000 * 109.47022 * 299.99710 * 1 2 3 28 28 H 1.09000 * 109.47132 * 59.99776 * 1 2 3 29 29 H 1.08994 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47022 * 240.00290 * 2 1 3 31 31 H 1.09000 * 109.47132 * 120.00224 * 2 1 3 32 32 H 0.96701 * 113.99683 * 59.99553 * 5 3 2 33 33 H 1.08994 * 109.46842 * 60.00063 * 6 3 2 34 34 H 1.08998 * 109.46543 * 299.99933 * 6 3 2 35 35 H 0.96999 * 120.00220 * 0.02562 * 7 6 3 36 36 H 1.08999 * 109.47348 * 300.00586 * 10 8 7 37 37 H 1.09000 * 109.47278 * 60.00449 * 10 8 7 38 38 H 0.97008 * 120.00562 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.00141 * 359.97438 * 22 21 11 40 40 H 1.08001 * 120.00720 * 180.27816 * 23 22 21 41 41 H 1.07993 * 120.00493 * 179.83767 * 24 23 22 42 42 H 1.07996 * 119.99965 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.00082 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6620 2.0814 1.2211 6 6 3.5649 1.4443 -0.1258 7 7 4.0532 2.8256 -0.1251 8 6 5.3746 3.0732 -0.2212 9 8 6.1588 2.1527 -0.3131 10 6 5.8774 4.4937 -0.2143 11 6 7.4028 4.4955 -0.3338 12 1 7.8299 3.8793 0.4574 13 6 7.8020 3.9376 -1.6757 14 1 7.1466 4.0550 -2.5260 15 6 9.0041 3.2775 -1.8178 16 7 9.7574 3.0491 -0.7643 17 14 9.5627 2.7075 -3.5068 18 1 9.6889 3.8807 -4.4084 19 1 10.8783 2.0286 -3.3900 20 1 8.5648 1.7597 -4.0644 21 6 7.9153 5.9066 -0.2038 22 6 7.5620 6.8594 -1.1409 23 6 8.0286 8.1549 -1.0192 24 6 8.8559 8.4955 0.0347 25 6 9.2135 7.5413 0.9689 26 6 8.7433 6.2468 0.8495 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0142 1.6541 2.0139 33 1 3.8532 0.9571 -1.0571 34 1 3.9994 0.9053 0.7161 35 1 3.4259 3.5617 -0.0512 36 1 5.4460 5.0360 -1.0557 37 1 5.5859 4.9779 0.7177 38 1 10.6030 2.5843 -0.8642 39 1 6.9190 6.5924 -1.9665 40 1 7.7490 8.9005 -1.7488 41 1 9.2226 9.5069 0.1283 42 1 9.8594 7.8074 1.7924 43 1 9.0226 5.5014 1.5794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344377795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = -82.416586 kcal Electronic energy + Delta-G solvation = -23026.766842 eV Core-core repulsion = 19650.037030 eV Total energy + Delta-G solvation = -3376.729812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.23946 -38.36161 -37.68049 -34.16016 -33.56839 -32.95664 -31.42101 -29.98751 -29.31927 -28.00675 -25.49425 -23.56727 -22.43121 -21.66020 -21.57492 -20.03809 -19.14351 -16.90057 -16.47795 -16.33621 -16.11816 -15.66352 -15.06391 -14.52750 -14.46488 -14.25893 -13.98268 -13.82422 -13.55432 -12.89921 -12.69057 -12.45329 -12.31201 -12.21395 -12.18267 -11.89771 -11.59017 -11.50180 -11.21763 -10.95753 -10.83810 -10.65887 -10.56926 -10.24959 -10.17387 -9.98803 -9.40293 -9.08718 -8.78922 -8.51295 -8.28828 -8.02291 -7.59373 -5.89442 -3.88592 2.31114 2.36784 3.40540 3.43735 3.46326 3.61102 3.66036 4.29178 4.54110 4.57681 4.76442 4.78705 4.83552 5.21520 5.27769 5.43734 5.50022 5.67877 5.68868 5.69644 5.73199 5.75421 5.86432 5.98739 6.01005 6.06843 6.15040 6.24913 6.32592 6.43603 6.57033 6.83418 6.93998 6.96664 7.06986 7.33214 7.45912 7.47951 7.56511 7.91220 7.97338 8.08479 8.18082 8.42473 9.10099 9.15778 9.72035 11.20684 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.004229 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.441058 B = 6619.556543 C = 7960.458964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.096 3.904 4 H 0.103 0.897 5 O -0.559 6.559 6 C 0.090 3.910 7 N -0.746 5.746 8 C 0.510 3.490 9 O -0.496 6.496 10 C -0.121 4.121 11 C 0.079 3.921 12 H 0.072 0.928 13 C -0.490 4.490 14 H 0.049 0.951 15 C 0.077 3.923 16 N -0.881 5.881 17 Si 0.885 3.115 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C -0.022 4.022 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.155 4.155 25 C -0.129 4.129 26 C -0.119 4.119 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.376 0.624 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.259 0.741 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.288 0.663 3.539 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.037 3.963 4 H 0.121 0.879 5 O -0.365 6.365 6 C -0.034 4.034 7 N -0.402 5.402 8 C 0.297 3.703 9 O -0.368 6.368 10 C -0.161 4.161 11 C 0.060 3.940 12 H 0.090 0.910 13 C -0.528 4.528 14 H 0.067 0.933 15 C -0.126 4.126 16 N -0.518 5.518 17 Si 0.713 3.287 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.023 4.023 22 C -0.133 4.133 23 C -0.151 4.151 24 C -0.174 4.174 25 C -0.147 4.147 26 C -0.137 4.137 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.230 0.770 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.789 0.266 3.108 14.137 hybrid contribution 0.552 -0.431 -0.730 1.012 sum -13.237 -0.165 2.377 13.450 Atomic orbital electron populations 1.21690 0.94987 1.01428 1.02371 1.22166 0.97101 0.96767 1.03246 1.22226 0.92812 0.93331 0.87981 0.87927 1.86558 1.76800 1.57411 1.15683 1.21883 0.93440 0.85477 1.02639 1.46096 1.08317 1.07281 1.78551 1.20928 0.80861 0.92779 0.75760 1.90765 1.54623 1.46150 1.45220 1.21757 1.01107 0.92087 1.01185 1.17829 0.87244 0.88459 1.00486 0.90958 1.20638 1.03524 1.35054 0.93585 0.93254 1.24807 0.96932 0.94914 0.95979 1.69891 1.12483 1.41087 1.28377 0.86784 0.77838 0.78805 0.85285 1.20415 1.21409 1.20434 1.20763 0.93798 0.96644 0.91086 1.20955 1.00970 0.92378 0.98949 1.20979 0.99347 0.96602 0.98126 1.20797 1.01285 0.98538 0.96748 1.20986 1.00579 0.94049 0.99065 1.21100 0.98575 0.95249 0.98823 0.92077 0.92746 0.92854 0.90700 0.91346 0.77704 0.91194 0.91905 0.77033 0.90595 0.91660 0.93138 0.86864 0.87668 0.87811 0.87644 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.81 37.16 0.36 -0.75 16 2 C -0.15 -1.26 5.61 -26.73 -0.15 -1.41 16 3 C 0.10 0.93 3.05 -26.73 -0.08 0.84 16 4 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 5 O -0.56 -5.49 12.62 -35.23 -0.44 -5.94 16 6 C 0.09 1.18 5.34 -4.04 -0.02 1.16 16 7 N -0.75 -11.24 5.45 -60.30 -0.33 -11.57 16 8 C 0.51 10.29 7.58 -10.98 -0.08 10.21 16 9 O -0.50 -12.57 14.98 5.56 0.08 -12.48 16 10 C -0.12 -2.38 4.94 -27.88 -0.14 -2.52 16 11 C 0.08 1.90 1.69 -92.92 -0.16 1.75 16 12 H 0.07 2.01 6.95 -51.93 -0.36 1.65 16 13 C -0.49 -13.31 6.38 -34.44 -0.22 -13.53 16 14 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 15 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 16 N -0.88 -26.16 12.85 55.43 0.71 -25.45 16 17 Si 0.88 22.32 29.54 -169.99 -5.02 17.30 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 C -0.02 -0.50 4.77 -104.63 -0.50 -1.00 16 22 C -0.11 -2.34 8.86 -39.59 -0.35 -2.69 16 23 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 24 C -0.16 -2.74 10.05 -39.58 -0.40 -3.14 16 25 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 26 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16 27 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 2.73 9.05 45.56 0.41 3.15 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.40 5.03 8.35 -40.82 -0.34 4.69 16 36 H 0.08 1.38 7.76 -51.93 -0.40 0.98 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.11 2.23 7.75 -52.49 -0.41 1.82 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.11 2.46 7.95 -52.49 -0.42 2.04 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -33.03 361.12 -8.69 -41.72 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.12 Total: 8.49 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.01 Total: -17.51 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.38 Total: -37.02 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.36 Total: -18.42 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.03 -8.69 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344377795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.698 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds