Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 H 1.08997 * 109.47634 * 305.00304 * 3 2 1 5 5 O 1.42901 * 109.47066 * 65.00203 * 3 2 1 6 6 C 1.53005 * 109.47130 * 185.00138 * 3 2 1 7 7 N 1.46498 * 109.46873 * 180.02562 * 6 3 2 8 8 C 1.34783 * 119.99693 * 179.72285 * 7 6 3 9 9 O 1.21275 * 119.99703 * 0.27529 * 8 7 6 10 10 C 1.50698 * 119.99877 * 180.27361 * 8 7 6 11 11 C 1.53000 * 109.47271 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47300 * 305.01005 * 11 10 8 13 13 C 1.50705 * 109.46529 * 64.99855 * 11 10 8 14 14 H 1.07999 * 120.00167 * 29.59136 * 13 11 10 15 15 C 1.37875 * 119.99931 * 209.58166 * 13 11 10 16 16 N 1.31507 * 120.00096 * 4.94748 * 15 13 11 17 17 Si 1.86802 * 119.99924 * 184.94725 * 15 13 11 18 18 H 1.48493 * 109.47242 * 60.00202 * 17 15 13 19 19 H 1.48507 * 109.46873 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47127 * 299.99930 * 17 15 13 21 21 C 1.50698 * 109.47375 * 185.00021 * 11 10 8 22 22 C 1.38232 * 120.00009 * 296.77218 * 21 11 10 23 23 C 1.38232 * 120.00004 * 179.78929 * 22 21 11 24 24 C 1.38238 * 120.00094 * 0.44012 * 23 22 21 25 25 C 1.38242 * 119.99616 * 359.81327 * 24 23 22 26 26 C 1.38232 * 119.99763 * 117.04760 * 21 11 10 27 27 H 1.09000 * 109.47022 * 299.99710 * 1 2 3 28 28 H 1.09000 * 109.47132 * 59.99776 * 1 2 3 29 29 H 1.08994 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47022 * 240.00290 * 2 1 3 31 31 H 1.09000 * 109.47132 * 120.00224 * 2 1 3 32 32 H 0.96701 * 113.99683 * 59.99553 * 5 3 2 33 33 H 1.08994 * 109.46842 * 60.00063 * 6 3 2 34 34 H 1.08998 * 109.46543 * 299.99933 * 6 3 2 35 35 H 0.96999 * 120.00220 * 0.02562 * 7 6 3 36 36 H 1.08999 * 109.47348 * 300.00586 * 10 8 7 37 37 H 1.09000 * 109.47278 * 60.00449 * 10 8 7 38 38 H 0.97008 * 120.00562 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.00141 * 359.97438 * 22 21 11 40 40 H 1.08001 * 120.00720 * 180.27816 * 23 22 21 41 41 H 1.07993 * 120.00493 * 179.83767 * 24 23 22 42 42 H 1.07996 * 119.99965 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.00082 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6620 2.0814 1.2211 6 6 3.5649 1.4443 -0.1258 7 7 4.0532 2.8256 -0.1251 8 6 5.3746 3.0732 -0.2212 9 8 6.1588 2.1527 -0.3131 10 6 5.8774 4.4937 -0.2143 11 6 7.4028 4.4955 -0.3338 12 1 7.8299 3.8793 0.4574 13 6 7.8020 3.9376 -1.6757 14 1 7.1466 4.0550 -2.5260 15 6 9.0041 3.2775 -1.8178 16 7 9.7574 3.0491 -0.7643 17 14 9.5627 2.7075 -3.5068 18 1 9.6889 3.8807 -4.4084 19 1 10.8783 2.0286 -3.3900 20 1 8.5648 1.7597 -4.0644 21 6 7.9153 5.9066 -0.2038 22 6 7.5620 6.8594 -1.1409 23 6 8.0286 8.1549 -1.0192 24 6 8.8559 8.4955 0.0347 25 6 9.2135 7.5413 0.9689 26 6 8.7433 6.2468 0.8495 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0142 1.6541 2.0139 33 1 3.8532 0.9571 -1.0571 34 1 3.9994 0.9053 0.7161 35 1 3.4259 3.5617 -0.0512 36 1 5.4460 5.0360 -1.0557 37 1 5.5859 4.9779 0.7177 38 1 10.6030 2.5843 -0.8642 39 1 6.9190 6.5924 -1.9665 40 1 7.7490 8.9005 -1.7488 41 1 9.2226 9.5069 0.1283 42 1 9.8594 7.8074 1.7924 43 1 9.0226 5.5014 1.5794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344377795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = -105.258140 kcal Electronic energy + Delta-G solvation = -23027.757326 eV Core-core repulsion = 19650.037030 eV Total energy + Delta-G solvation = -3377.720296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72566 -39.77941 -38.80626 -35.86103 -35.03869 -33.70806 -33.37849 -31.49985 -30.71901 -29.25522 -27.31941 -24.89755 -23.79932 -23.10325 -22.48563 -21.57108 -20.75641 -18.54163 -18.04420 -17.54357 -17.17184 -17.05003 -16.54384 -16.12146 -15.93468 -15.68314 -15.37859 -15.15404 -14.58273 -14.42731 -14.17963 -13.95301 -13.67399 -13.61688 -13.23828 -13.15345 -12.98239 -12.86450 -12.80760 -12.51956 -12.45349 -11.84357 -11.83988 -11.74416 -11.67967 -11.28904 -11.03867 -10.98386 -10.55844 -10.34754 -9.91199 -9.53990 -9.19179 -8.02448 -6.05292 0.78153 0.84340 1.36685 1.39352 1.44144 1.99780 2.39183 2.46690 3.18930 3.36253 3.50026 3.70252 3.97941 4.10109 4.24106 4.26271 4.36500 4.37940 4.42229 4.56137 4.59750 4.65456 4.71613 4.78920 4.86233 4.92553 4.93928 5.00595 5.12702 5.24298 5.29239 5.38620 5.42003 5.52556 5.64084 5.68207 5.79235 5.84044 5.96687 6.18848 6.42724 6.47083 6.75672 6.83164 7.01962 7.56406 7.62783 9.07045 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.004229 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.441058 B = 6619.556543 C = 7960.458964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.108 0.892 5 O -0.566 6.566 6 C 0.088 3.912 7 N -0.724 5.724 8 C 0.508 3.492 9 O -0.558 6.558 10 C -0.116 4.116 11 C 0.081 3.919 12 H 0.023 0.977 13 C -0.484 4.484 14 H 0.046 0.954 15 C 0.021 3.979 16 N -0.918 5.918 17 Si 0.935 3.065 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.281 1.281 21 C -0.047 4.047 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.147 4.147 25 C -0.129 4.129 26 C -0.144 4.144 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.387 0.613 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.412 0.588 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.253 0.747 39 H 0.116 0.884 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 2.900 2.902 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.190 4.190 3 C 0.052 3.948 4 H 0.126 0.874 5 O -0.373 6.373 6 C -0.036 4.036 7 N -0.379 5.379 8 C 0.295 3.705 9 O -0.435 6.435 10 C -0.156 4.156 11 C 0.062 3.938 12 H 0.042 0.958 13 C -0.522 4.522 14 H 0.064 0.936 15 C -0.178 4.178 16 N -0.558 5.558 17 Si 0.762 3.238 18 H -0.191 1.191 19 H -0.215 1.215 20 H -0.207 1.207 21 C -0.047 4.047 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.165 4.165 25 C -0.147 4.147 26 C -0.163 4.163 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.248 0.752 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.134 0.866 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.150 0.850 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.471 2.532 2.473 15.871 hybrid contribution 0.966 -1.048 -0.458 1.497 sum -14.505 1.484 2.016 14.720 Atomic orbital electron populations 1.21664 0.94148 1.02046 1.02303 1.22142 0.97683 0.95544 1.03630 1.22089 0.89839 0.94570 0.88301 0.87391 1.86538 1.76742 1.57868 1.16155 1.22061 0.96021 0.83849 1.01703 1.45852 1.06862 1.08954 1.76280 1.21061 0.82014 0.92338 0.75038 1.90745 1.56527 1.47647 1.48535 1.21654 0.98314 0.92421 1.03210 1.17610 0.89883 0.89032 0.97250 0.95836 1.20943 1.02772 1.33875 0.94647 0.93614 1.25508 0.97627 0.95896 0.98760 1.70048 1.12793 1.42921 1.29988 0.85975 0.77161 0.78607 0.82058 1.19127 1.21476 1.20660 1.20573 0.95249 0.96103 0.92788 1.21051 1.01675 0.93247 0.98556 1.21381 0.98214 0.96123 0.98733 1.21271 0.99845 0.99976 0.95420 1.21289 1.00271 0.92902 1.00189 1.21112 0.99693 0.96525 0.98955 0.92304 0.92627 0.91943 0.90635 0.90786 0.76377 0.92508 0.92617 0.75202 0.88649 0.89219 0.93806 0.86584 0.84093 0.83821 0.85025 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.81 71.98 0.71 -1.19 16 2 C -0.15 -2.24 5.61 30.60 0.17 -2.07 16 3 C 0.11 1.99 3.05 30.60 0.09 2.08 16 4 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 5 O -0.57 -10.03 12.62 -148.98 -1.88 -11.91 16 6 C 0.09 2.28 5.34 86.38 0.46 2.74 16 7 N -0.72 -21.47 5.45 -463.06 -2.52 -24.00 16 8 C 0.51 20.93 7.58 87.66 0.66 21.59 16 9 O -0.56 -29.63 14.98 -3.01 -0.05 -29.67 16 10 C -0.12 -4.58 4.94 29.85 0.15 -4.44 16 11 C 0.08 4.08 1.69 -12.29 -0.02 4.06 16 12 H 0.02 1.39 6.95 -2.39 -0.02 1.38 16 13 C -0.48 -27.04 6.38 25.60 0.16 -26.87 16 14 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 15 C 0.02 1.21 5.45 84.66 0.46 1.67 16 16 N -0.92 -57.20 12.85 21.45 0.28 -56.93 16 17 Si 0.94 46.87 29.54 68.60 2.03 48.90 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 20 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 21 C -0.05 -2.10 4.77 -19.87 -0.09 -2.20 16 22 C -0.13 -5.01 8.86 22.27 0.20 -4.81 16 23 C -0.13 -4.15 10.05 22.27 0.22 -3.92 16 24 C -0.15 -4.61 10.05 22.27 0.22 -4.38 16 25 C -0.13 -4.56 10.05 22.27 0.22 -4.33 16 26 C -0.14 -6.29 9.67 22.27 0.22 -6.07 16 27 H 0.06 0.81 7.82 -2.39 -0.02 0.79 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.39 4.98 9.05 -74.06 -0.67 4.31 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.41 9.76 8.35 -92.71 -0.77 8.98 16 36 H 0.10 3.37 7.76 -2.39 -0.02 3.35 16 37 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 39 H 0.12 4.40 7.75 -2.91 -0.02 4.38 16 40 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 41 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.09 4.31 7.95 -2.91 -0.02 4.28 16 Total: -1.00 -75.13 361.12 1.25 -73.88 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.44 Total: 27.88 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.84 Total: -28.15 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -2.25 Total: -80.92 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.92 Total: -41.59 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -75.13 1.25 -73.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344377795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.380 kcal (2) G-P(sol) polarization free energy of solvation -75.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds