Wall clock time and date at job start Tue Mar 31 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 N 1.46493 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.37096 * 119.99867 * 263.05732 * 4 3 2 6 6 H 1.08002 * 119.99640 * 192.40906 * 5 4 3 7 7 C 1.38945 * 120.00009 * 12.41280 * 5 4 3 8 8 N 1.31413 * 120.00269 * 17.01257 * 7 5 4 9 9 Si 1.86805 * 120.00084 * 197.01053 * 7 5 4 10 10 H 1.48500 * 109.47231 * 89.99709 * 9 7 5 11 11 H 1.48497 * 109.47169 * 210.00190 * 9 7 5 12 12 H 1.48503 * 109.46871 * 329.99936 * 9 7 5 13 13 C 1.34781 * 120.00342 * 83.06016 * 4 3 2 14 14 O 1.21291 * 120.00180 * 184.72256 * 13 4 3 15 15 C 1.50701 * 119.99652 * 4.72128 * 13 4 3 16 16 H 1.09002 * 109.47089 * 319.24105 * 15 13 4 17 17 C 1.52994 * 109.47334 * 79.24040 * 15 13 4 18 18 O 1.42900 * 109.46835 * 199.24261 * 15 13 4 19 19 C 1.35908 * 116.99987 * 156.79549 * 18 15 13 20 20 C 1.38739 * 120.05378 * 1.45949 * 19 18 15 21 21 C 1.38143 * 119.94142 * 179.97438 * 20 19 18 22 22 C 1.38268 * 120.05656 * 0.27347 * 21 20 19 23 23 C 1.50694 * 119.94238 * 179.72277 * 22 21 20 24 24 C 1.38274 * 120.10839 * 359.45132 * 22 21 20 25 25 C 1.38137 * 120.05511 * 0.55028 * 24 22 21 26 26 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47131 * 299.99848 * 1 2 3 28 28 H 1.08994 * 109.46881 * 60.00583 * 1 2 3 29 29 H 1.09001 * 109.47330 * 239.99712 * 2 1 3 30 30 H 1.09003 * 109.47455 * 119.99471 * 2 1 3 31 31 H 1.08999 * 109.46893 * 59.99328 * 3 2 1 32 32 H 1.09003 * 109.46554 * 300.00022 * 3 2 1 33 33 H 0.96995 * 119.99923 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47208 * 56.46676 * 17 15 13 35 35 H 1.09000 * 109.47334 * 176.46290 * 17 15 13 36 36 H 1.09002 * 109.47156 * 296.46714 * 17 15 13 37 37 H 1.07998 * 120.02476 * 359.95420 * 20 19 18 38 38 H 1.07994 * 119.96854 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46971 * 90.00393 * 23 22 21 40 40 H 1.09001 * 109.47258 * 209.99616 * 23 22 21 41 41 H 1.08999 * 109.47491 * 330.00257 * 23 22 21 42 42 H 1.07999 * 119.96709 * 180.25107 * 24 22 21 43 43 H 1.07999 * 120.02450 * 179.70696 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5863 1.1795 6 1 5.2510 1.7872 1.1664 7 6 3.5190 1.4735 2.3910 8 7 2.3325 0.9102 2.4351 9 14 4.3036 2.1224 3.9572 10 1 3.9118 3.5409 4.1562 11 1 3.8414 1.3141 5.1140 12 1 5.7815 2.0279 3.8463 13 6 4.1794 1.3014 -1.1577 14 8 5.3892 1.2154 -1.1485 15 6 3.4303 1.2504 -2.4644 16 1 2.5287 0.6499 -2.3431 17 6 3.0449 2.6694 -2.8870 18 8 4.2619 0.6638 -3.4675 19 6 3.6371 0.1001 -4.5348 20 6 2.2535 0.1381 -4.6296 21 6 1.6208 -0.4351 -5.7157 22 6 2.3650 -1.0512 -6.7049 23 6 1.6719 -1.6812 -7.8854 24 6 3.7444 -1.0854 -6.6154 25 6 4.3818 -0.5137 -5.5314 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.8641 0.8318 3.2808 34 1 3.9413 3.2867 -2.9475 35 1 2.5586 2.6387 -3.8621 36 1 2.3603 3.0939 -2.1528 37 1 1.6716 0.6151 -3.8549 38 1 0.5438 -0.4062 -5.7898 39 1 1.5641 -0.9428 -8.6799 40 1 2.2637 -2.5215 -8.2482 41 1 0.6865 -2.0348 -7.5820 42 1 4.3237 -1.5637 -7.3913 43 1 5.4589 -0.5448 -5.4596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345595882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:36 Heat of formation + Delta-G solvation = -42.009099 kcal Electronic energy + Delta-G solvation = -23928.317236 eV Core-core repulsion = 20553.339624 eV Total energy + Delta-G solvation = -3374.977612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22824 -38.74783 -37.22718 -35.29993 -32.68881 -32.05783 -31.53188 -31.06172 -30.38002 -26.38408 -25.99137 -24.90392 -23.55027 -22.57094 -21.13897 -20.68088 -19.11073 -17.99189 -16.95675 -16.21525 -15.62433 -15.27614 -15.13356 -14.59396 -14.27358 -13.98444 -13.87596 -13.74925 -13.50357 -13.39238 -13.17466 -12.85585 -12.34844 -12.16097 -12.09028 -11.90692 -11.66135 -11.45916 -11.40144 -11.32559 -10.98574 -10.91854 -10.64249 -10.54421 -10.36006 -10.31814 -10.12568 -9.72839 -8.93673 -8.90688 -8.39811 -7.82331 -7.77251 -6.34384 -3.87437 1.43857 1.54567 3.11563 3.22154 3.25259 3.37243 3.78878 3.86514 4.13178 4.77471 4.89909 4.90956 4.99545 5.04092 5.22278 5.29813 5.41512 5.44414 5.48377 5.53057 5.61835 5.78059 5.82538 5.87055 5.92388 5.95321 5.98298 6.13844 6.19764 6.28887 6.39913 6.43086 6.53133 6.57312 6.67017 6.76050 6.83622 6.91990 7.27435 7.45055 7.66139 7.71874 8.04249 8.46544 9.12099 9.34750 9.89266 10.62717 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.004164 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.505769 B = 6722.514231 C = 7403.577312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.119 3.881 4 N -0.436 5.436 5 C -0.300 4.300 6 H 0.104 0.896 7 C 0.028 3.972 8 N -0.872 5.872 9 Si 0.927 3.073 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.449 3.551 14 O -0.571 6.571 15 C 0.073 3.927 16 H 0.087 0.913 17 C -0.172 4.172 18 O -0.283 6.283 19 C 0.137 3.863 20 C -0.210 4.210 21 C -0.079 4.079 22 C -0.139 4.139 23 C -0.105 4.105 24 C -0.081 4.081 25 C -0.153 4.153 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.026 0.974 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.125 0.875 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 -1.685 -13.281 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C -0.004 4.004 4 N -0.155 5.155 5 C -0.427 4.427 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.513 5.513 9 Si 0.754 3.246 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.235 3.765 14 O -0.454 6.454 15 C 0.013 3.987 16 H 0.104 0.896 17 C -0.230 4.230 18 O -0.195 6.195 19 C 0.090 3.910 20 C -0.229 4.229 21 C -0.097 4.097 22 C -0.140 4.140 23 C -0.162 4.162 24 C -0.099 4.099 25 C -0.172 4.172 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.187 -1.742 -13.043 14.541 hybrid contribution -0.128 0.264 0.880 0.928 sum -6.315 -1.478 -12.162 13.784 Atomic orbital electron populations 1.21598 0.97094 1.00157 1.00628 1.21941 0.94162 0.98212 1.02093 1.21708 0.80518 0.97056 1.01153 1.43669 1.05417 1.61476 1.04987 1.19781 0.95403 1.45776 0.81774 0.87874 1.25235 0.96485 0.96525 0.99183 1.70044 1.14262 1.40296 1.26664 0.85902 0.79595 0.78659 0.80445 1.20405 1.20993 1.19448 1.19375 0.88013 0.85030 0.84076 1.90544 1.13931 1.54430 1.86497 1.22342 0.93827 0.94774 0.87752 0.89561 1.22311 1.02874 0.95895 1.01897 1.86239 1.34971 1.69497 1.28826 1.19211 0.91148 0.92550 0.88052 1.21353 0.93693 1.06738 1.01093 1.20780 0.99396 0.96443 0.93071 1.19752 0.93786 1.02567 0.97846 1.20668 1.00020 0.99899 0.95598 1.20779 0.93771 0.98443 0.96946 1.20440 1.00386 1.02313 0.94032 0.94007 0.92467 0.94529 0.95540 0.87937 0.87015 0.95160 0.92246 0.91078 0.91808 0.90274 0.85188 0.86094 0.91782 0.91934 0.91945 0.85740 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.13 -2.55 5.49 -26.73 -0.15 -2.70 16 3 C 0.12 2.55 4.22 -4.04 -0.02 2.53 16 4 N -0.44 -10.94 2.64 -114.81 -0.30 -11.24 16 5 C -0.30 -8.15 9.43 -14.94 -0.14 -8.29 16 6 H 0.10 2.98 7.32 -52.49 -0.38 2.60 16 7 C 0.03 0.70 5.06 -17.47 -0.09 0.61 16 8 N -0.87 -21.40 8.28 55.50 0.46 -20.94 16 9 Si 0.93 20.12 29.59 -169.99 -5.03 15.09 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.45 11.28 6.83 -10.98 -0.07 11.20 16 14 O -0.57 -16.68 16.25 -13.58 -0.22 -16.90 16 15 C 0.07 1.45 1.81 -27.89 -0.05 1.40 16 16 H 0.09 1.61 3.76 -51.93 -0.20 1.41 16 17 C -0.17 -2.87 8.94 37.15 0.33 -2.54 16 18 O -0.28 -5.85 9.41 -38.58 -0.36 -6.21 16 19 C 0.14 2.34 6.55 -39.22 -0.26 2.09 16 20 C -0.21 -3.12 8.21 -39.43 -0.32 -3.45 16 21 C -0.08 -0.99 9.69 -39.61 -0.38 -1.38 16 22 C -0.14 -1.65 5.88 -104.60 -0.62 -2.27 16 23 C -0.11 -0.90 10.01 36.00 0.36 -0.54 16 24 C -0.08 -1.01 9.69 -39.61 -0.38 -1.39 16 25 C -0.15 -2.30 9.99 -39.44 -0.39 -2.70 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.53 6.79 -51.93 -0.35 0.18 16 30 H 0.10 2.42 6.34 -51.93 -0.33 2.09 16 31 H 0.11 2.58 5.80 -51.93 -0.30 2.27 16 32 H 0.03 0.56 5.09 -51.93 -0.26 0.30 16 33 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.91 7.03 -51.93 -0.36 0.54 16 36 H 0.08 1.24 6.41 -51.93 -0.33 0.90 16 37 H 0.13 1.84 5.55 -52.49 -0.29 1.55 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 41 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -30.25 342.65 -8.28 -38.53 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.17 Total: 5.81 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.82 Total: -9.30 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.16 Total: -32.18 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.58 Total: -23.11 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.25 -8.28 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345595882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.480 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds