Wall clock time and date at job start Tue Mar 31 2020 06:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47060 * 2 1 4 4 N 1.46493 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.37096 * 119.99867 * 263.05732 * 4 3 2 6 6 H 1.08002 * 119.99640 * 192.40906 * 5 4 3 7 7 C 1.38945 * 120.00009 * 12.41280 * 5 4 3 8 8 N 1.31413 * 120.00269 * 17.01257 * 7 5 4 9 9 Si 1.86805 * 120.00084 * 197.01053 * 7 5 4 10 10 H 1.48500 * 109.47231 * 89.99709 * 9 7 5 11 11 H 1.48497 * 109.47169 * 210.00190 * 9 7 5 12 12 H 1.48503 * 109.46871 * 329.99936 * 9 7 5 13 13 C 1.34781 * 120.00342 * 83.06016 * 4 3 2 14 14 O 1.21291 * 120.00180 * 184.72256 * 13 4 3 15 15 C 1.50701 * 119.99652 * 4.72128 * 13 4 3 16 16 H 1.09002 * 109.47089 * 319.24105 * 15 13 4 17 17 C 1.52994 * 109.47334 * 79.24040 * 15 13 4 18 18 O 1.42900 * 109.46835 * 199.24261 * 15 13 4 19 19 C 1.35908 * 116.99987 * 156.79549 * 18 15 13 20 20 C 1.38739 * 120.05378 * 1.45949 * 19 18 15 21 21 C 1.38143 * 119.94142 * 179.97438 * 20 19 18 22 22 C 1.38268 * 120.05656 * 0.27347 * 21 20 19 23 23 C 1.50694 * 119.94238 * 179.72277 * 22 21 20 24 24 C 1.38274 * 120.10839 * 359.45132 * 22 21 20 25 25 C 1.38137 * 120.05511 * 0.55028 * 24 22 21 26 26 H 1.09006 * 109.46724 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47131 * 299.99848 * 1 2 3 28 28 H 1.08994 * 109.46881 * 60.00583 * 1 2 3 29 29 H 1.09001 * 109.47330 * 239.99712 * 2 1 3 30 30 H 1.09003 * 109.47455 * 119.99471 * 2 1 3 31 31 H 1.08999 * 109.46893 * 59.99328 * 3 2 1 32 32 H 1.09003 * 109.46554 * 300.00022 * 3 2 1 33 33 H 0.96995 * 119.99923 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.47208 * 56.46676 * 17 15 13 35 35 H 1.09000 * 109.47334 * 176.46290 * 17 15 13 36 36 H 1.09002 * 109.47156 * 296.46714 * 17 15 13 37 37 H 1.07998 * 120.02476 * 359.95420 * 20 19 18 38 38 H 1.07994 * 119.96854 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46971 * 90.00393 * 23 22 21 40 40 H 1.09001 * 109.47258 * 209.99616 * 23 22 21 41 41 H 1.08999 * 109.47491 * 330.00257 * 23 22 21 42 42 H 1.07999 * 119.96709 * 180.25107 * 24 22 21 43 43 H 1.07999 * 120.02450 * 179.70696 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5863 1.1795 6 1 5.2510 1.7872 1.1664 7 6 3.5190 1.4735 2.3910 8 7 2.3325 0.9102 2.4351 9 14 4.3036 2.1224 3.9572 10 1 3.9118 3.5409 4.1562 11 1 3.8414 1.3141 5.1140 12 1 5.7815 2.0279 3.8463 13 6 4.1794 1.3014 -1.1577 14 8 5.3892 1.2154 -1.1485 15 6 3.4303 1.2504 -2.4644 16 1 2.5287 0.6499 -2.3431 17 6 3.0449 2.6694 -2.8870 18 8 4.2619 0.6638 -3.4675 19 6 3.6371 0.1001 -4.5348 20 6 2.2535 0.1381 -4.6296 21 6 1.6208 -0.4351 -5.7157 22 6 2.3650 -1.0512 -6.7049 23 6 1.6719 -1.6812 -7.8854 24 6 3.7444 -1.0854 -6.6154 25 6 4.3818 -0.5137 -5.5314 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.8641 0.8318 3.2808 34 1 3.9413 3.2867 -2.9475 35 1 2.5586 2.6387 -3.8621 36 1 2.3603 3.0939 -2.1528 37 1 1.6716 0.6151 -3.8549 38 1 0.5438 -0.4062 -5.7898 39 1 1.5641 -0.9428 -8.6799 40 1 2.2637 -2.5215 -8.2482 41 1 0.6865 -2.0348 -7.5820 42 1 4.3237 -1.5637 -7.3913 43 1 5.4589 -0.5448 -5.4596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345595882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:35 Heat of formation + Delta-G solvation = -57.767544 kcal Electronic energy + Delta-G solvation = -23929.000573 eV Core-core repulsion = 20553.339624 eV Total energy + Delta-G solvation = -3375.660949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61713 -40.33170 -38.56217 -37.22181 -34.41033 -33.43255 -33.06821 -32.30463 -31.63087 -27.77886 -27.34473 -26.58000 -25.00311 -23.76368 -22.43463 -22.15233 -20.74288 -19.40501 -18.86730 -17.88669 -17.18788 -16.64896 -16.31237 -16.22906 -15.74670 -15.56671 -15.36000 -15.21664 -14.76357 -14.47791 -14.38374 -14.14918 -13.77617 -13.62603 -13.43561 -13.30087 -13.08424 -12.85698 -12.77029 -12.55456 -12.45430 -12.36472 -12.21533 -12.12190 -12.01231 -11.78035 -11.62758 -11.38743 -10.81151 -10.34738 -9.94053 -9.70713 -8.96470 -8.30097 -5.92634 0.40119 0.47342 1.34369 1.42318 1.52397 1.78121 2.03203 2.35835 2.80816 3.01895 3.11478 3.64605 3.77391 3.92911 3.98215 4.00184 4.12509 4.28532 4.37041 4.47597 4.49207 4.51084 4.60638 4.64328 4.74617 4.83551 4.86817 4.94911 5.04312 5.07742 5.13334 5.21260 5.22196 5.37041 5.40690 5.43131 5.45074 5.60034 5.70446 5.87940 5.91854 6.03913 6.42643 6.55997 7.13411 7.39760 7.95189 8.63739 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.004164 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.505769 B = 6722.514231 C = 7403.577312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.120 4.120 3 C 0.120 3.880 4 N -0.440 5.440 5 C -0.349 4.349 6 H 0.069 0.931 7 C 0.007 3.993 8 N -0.867 5.867 9 Si 0.987 3.013 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.283 1.283 13 C 0.427 3.573 14 O -0.631 6.631 15 C 0.087 3.913 16 H 0.101 0.899 17 C -0.163 4.163 18 O -0.320 6.320 19 C 0.097 3.903 20 C -0.215 4.215 21 C -0.080 4.080 22 C -0.132 4.132 23 C -0.104 4.104 24 C -0.080 4.080 25 C -0.171 4.171 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.275 0.725 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.153 0.847 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 -2.088 -14.822 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.002 4.002 4 N -0.158 5.158 5 C -0.476 4.476 6 H 0.087 0.913 7 C -0.196 4.196 8 N -0.505 5.505 9 Si 0.811 3.189 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.209 1.209 13 C 0.216 3.784 14 O -0.519 6.519 15 C 0.028 3.972 16 H 0.118 0.882 17 C -0.221 4.221 18 O -0.233 6.233 19 C 0.052 3.948 20 C -0.233 4.233 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.098 4.098 25 C -0.189 4.189 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.171 0.829 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.475 -2.155 -14.591 17.531 hybrid contribution 0.833 0.285 1.310 1.578 sum -8.642 -1.870 -13.281 15.955 Atomic orbital electron populations 1.21514 0.93606 1.01556 1.01808 1.21802 0.97098 0.96755 1.00156 1.21830 0.78384 0.98108 1.01912 1.43906 1.06888 1.60415 1.04586 1.19638 0.94709 1.49474 0.83778 0.91315 1.25884 0.97037 0.95686 1.01024 1.70134 1.14232 1.38363 1.27740 0.85033 0.77931 0.78775 0.77137 1.19033 1.19569 1.20886 1.20359 0.87836 0.84259 0.85940 1.90480 1.16566 1.57160 1.87658 1.22108 0.92830 0.96902 0.85385 0.88195 1.22273 1.02595 0.93470 1.03739 1.86171 1.36358 1.70773 1.30034 1.19550 0.92581 0.94722 0.87954 1.21477 0.92611 1.07108 1.02136 1.21171 1.01003 0.95448 0.92176 1.20245 0.93610 1.00943 0.98431 1.20748 1.00461 1.00468 0.94383 1.21129 0.94615 0.97606 0.96463 1.20648 1.00394 1.03021 0.94862 0.92546 0.92863 0.91726 0.95762 0.91618 0.88544 0.91881 0.91454 0.92656 0.88812 0.89082 0.84682 0.83070 0.90335 0.90718 0.90641 0.82921 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.12 -4.79 5.49 30.60 0.17 -4.62 16 3 C 0.12 5.12 4.22 86.38 0.36 5.48 16 4 N -0.44 -22.99 2.64 -635.54 -1.68 -24.67 16 5 C -0.35 -19.93 9.43 84.04 0.79 -19.14 16 6 H 0.07 4.31 7.32 -2.91 -0.02 4.29 16 7 C 0.01 0.34 5.06 84.93 0.43 0.77 16 8 N -0.87 -42.48 8.28 21.66 0.18 -42.30 16 9 Si 0.99 41.69 29.59 68.60 2.03 43.71 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.43 22.69 6.83 87.66 0.60 23.29 16 14 O -0.63 -39.77 16.25 15.23 0.25 -39.52 16 15 C 0.09 3.56 1.81 29.85 0.05 3.62 16 16 H 0.10 3.70 3.76 -2.39 -0.01 3.69 16 17 C -0.16 -5.38 8.94 71.98 0.64 -4.74 16 18 O -0.32 -13.80 9.41 -74.22 -0.70 -14.50 16 19 C 0.10 3.35 6.55 22.51 0.15 3.50 16 20 C -0.21 -6.03 8.21 22.37 0.18 -5.85 16 21 C -0.08 -1.76 9.69 22.25 0.22 -1.55 16 22 C -0.13 -2.69 5.88 -19.85 -0.12 -2.81 16 23 C -0.10 -1.32 10.01 71.23 0.71 -0.61 16 24 C -0.08 -1.83 9.69 22.25 0.22 -1.62 16 25 C -0.17 -5.17 9.99 22.36 0.22 -4.95 16 26 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.02 0.96 6.79 -2.39 -0.02 0.94 16 30 H 0.07 3.13 6.34 -2.39 -0.02 3.11 16 31 H 0.10 4.42 5.80 -2.39 -0.01 4.40 16 32 H 0.06 2.25 5.09 -2.39 -0.01 2.24 16 33 H 0.28 12.58 8.31 -92.71 -0.77 11.81 16 34 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.09 2.51 7.03 -2.39 -0.02 2.49 16 36 H 0.09 2.72 6.41 -2.39 -0.02 2.70 16 37 H 0.14 3.53 5.55 -2.91 -0.02 3.51 16 38 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.80 8.09 -2.39 -0.02 0.79 16 41 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 42 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -71.17 342.65 6.43 -64.74 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 1.01 Total: 24.88 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 5.35 Total: -12.34 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -1.50 Total: -66.97 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.45 Total: -54.02 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -71.17 6.43 -64.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345595882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.969 kcal (2) G-P(sol) polarization free energy of solvation -71.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds